FvH4_7g07801

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010718
Physical Location & Seq
Forward (+)
7704675 .. 7708187
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07801.t1

Sequence Viewer

Length: 1131 bp
ATGGAGTTTAAAGGGGCATTGAGTTCTGAAAGAGGCAATTTTTCTGATTTGGGAAGTCCACTAGAGAATTTTGGTACACCTATATCCCAAAAGTCCCCTGTTCATGGTGGAATTTGTGCAAGTCTGAGGACTCCTTCTTCAGATCTATCCATGATGAGCAATTATTCTCCAGATGTTAAACATTTGGCAGAATCACCGGGAATTGGAGATTCATCTGCACTAAATCCTTCCCCTACAACTATTTCGTTCCCAACTACAGAACCTTCTCCTGCCCCCAGCTATCCGCTTCTCTACAACTCAACCCCATCAAGACGAGCCCGTCGTTCACCAGGACATCAGTTACTAAGACAGATTTCTGACAGTCGAATATTGGGTTTGAAATCTCCAAACAACAACTCAATATCTGAAGGAAGACAATCTTTTGTGCTCTCTACTTGCAGCAATGACTTGGCAACTGGATCCCAAGCTGGGTCATCTGATGGTTGGTCTATGCGCACCTTCTCTGAGCTTGTGGCTTCTTCTCAAAGGGAAAGATGGTCTTTTGACAGTGAGCACTTTGGTTCTATCCATGGAAAGCTAAGTGGCTGTAGCAGCAGGTTCTCATGTTCGCCTTCCATAGATATGCAGTCTTGTGGAGTCTGCTCAAAGCTCCTAACTGAGAGAACTTCATGGAGCATACAGAAAATTGTTGCCAGCAGTGAAATCTCTGTGGCGGCTGTGTTGGTTTGTGGACATGTTTACCATGCTGAGTGCTTGGAGACTATGACACTGGAGACTGATAGGTACGACCCGGTTTGCCCAATTTGTATGGTTGGAGAGAAGCAAGTCTGGAAGATGTCACGAAAAGTGATGAGGTCCGAATCAGAGATAAAGGCAAGAAACCACAAGATATCCAAAAATAGAGTTGTTGATAGCTTCCTGGAGGGTGAATATGATGTTTTTGATCATCAGAACACTGATAGAAAAGGAAAAGTTTTAGCCAAGTTAGAACCCAGTTCTAGTACAAGGAATTCCTTTACAAAGCCTTTCTTGAAACGGCACTTTTCTCTTGGATCCAAGTGGAGTAGGTCAATTTCTGAAAATGATTCCGCTAGGAAGAAGGGGTTTTGGGCCAGGTATCGTAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

377

Amino Acids

41.5

Weight (kDa)

9.11

Isoelectric Point (pI)

62.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 318
Acc16I TGCGCA 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 585
AciI CCGC 3 cut(s) 284, 713, 1089
AclWI GGATC 4 cut(s) 453, 466, 1047, 1060
AcsI RAATTY 3 cut(s) 67, 111, 1009
AcuI CTGAAG 2 cut(s) 123, 426
AfaI GTAC 3 cut(s) 76, 785, 1003
AfiI CCNNNNNNNGG 3 cut(s) 104, 203, 468
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 2 cut(s) 379, 1033
AjnI CCWGG 3 cut(s) 328, 918, 1112
AluBI AGCT 6 cut(s) 279, 467, 508, 577, 649, 915
AluI AGCT 6 cut(s) 279, 467, 508, 577, 649, 915
Alw21I GWGCWC 2 cut(s) 429, 555
Alw26I GTCTC 2 cut(s) 752, 767
AlwI GGATC 4 cut(s) 453, 466, 1047, 1060
AoxI GGCC 1 cut(s) 1110
ApeKI GCWGC 2 cut(s) 438, 591
ApoI RAATTY 3 cut(s) 67, 111, 1009
AspLEI GCGC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 855, 1110
AsuC2I CCSGG 2 cut(s) 198, 791
AsuHPI GGTGA 3 cut(s) 186, 318, 938
AvaII GGWCC 1 cut(s) 855
BamHI GGATCC 2 cut(s) 458, 1052
BanII GRGCYC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 418
Bbv12I GWGCWC 2 cut(s) 429, 555
BbvI GCAGC 2 cut(s) 450, 603
BccI CCATC 3 cut(s) 313, 473, 528
BceAI ACGGC 1 cut(s) 1052
BciT130I CCWGG 3 cut(s) 330, 920, 1114
BclI TGATCA 1 cut(s) 943
BcnI CCSGG 2 cut(s) 198, 791
BcoDI GTCTC 2 cut(s) 752, 767
BfaI CTAG 3 cut(s) 62, 999, 1092
BfmI CTRYAG 2 cut(s) 255, 586
BfuAI ACCTGC 1 cut(s) 585
BglII AGATCT 1 cut(s) 142
BisI GCNGC 3 cut(s) 439, 592, 714
BlsI GCNGC 3 cut(s) 440, 593, 715
Bme1390I CCNGG 5 cut(s) 198, 330, 791, 920, 1114
Bme18I GGWCC 1 cut(s) 855
BmgT120I GGNCC 2 cut(s) 855, 1110
BmiI GGNNCC 2 cut(s) 460, 1054
BmrFI CCNGG 5 cut(s) 198, 330, 791, 920, 1114
BmrI ACTGGG 1 cut(s) 987
BmuI ACTGGG 1 cut(s) 987
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 3 cut(s) 153, 791, 941
BpuMI CCSGG 2 cut(s) 198, 791
BsaJI CCNNGG 1 cut(s) 568
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 203, 468
Bse1I ACTGG 3 cut(s) 460, 774, 993
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 3 cut(s) 330, 920, 1114
BseDI CCNNGG 1 cut(s) 568
BseLI CCNNNNNNNGG 3 cut(s) 104, 203, 468
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 4 cut(s) 116, 495, 648, 738
BseNI ACTGG 3 cut(s) 460, 774, 993
BseXI GCAGC 2 cut(s) 450, 603
BseYI CCCAGC 2 cut(s) 275, 467
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 1 cut(s) 1112
BsiHKAI GWGCWC 2 cut(s) 429, 555
BsiSI CCGG 2 cut(s) 197, 791
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 104, 203, 468
BsmAI GTCTC 2 cut(s) 752, 767
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 1112
Bsp1286I GDGCHC 3 cut(s) 319, 429, 555
Bsp143I GATC 4 cut(s) 142, 458, 943, 1052
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 3 cut(s) 284, 713, 1089
BspANI GGCC 1 cut(s) 1112
BspCNI CTCAG 4 cut(s) 117, 496, 649, 739
BspLI GGNNCC 2 cut(s) 460, 1054
BspMI ACCTGC 1 cut(s) 585
BspPI GGATC 4 cut(s) 453, 466, 1047, 1060
BsrDI GCAATG 1 cut(s) 448
BsrI ACTGG 3 cut(s) 460, 774, 993
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 4 cut(s) 142, 458, 943, 1052
BssT1I CCWWGG 1 cut(s) 568
Bst2UI CCWGG 3 cut(s) 330, 920, 1114
Bst4CI ACNGT 2 cut(s) 362, 548
BstC8I GCNNGC 1 cut(s) 694
BstDEI CTNAG 6 cut(s) 125, 344, 504, 578, 657, 747
BstDSI CCRYGG 1 cut(s) 568
BstHHI GCGC 1 cut(s) 495
BstKTI GATC 4 cut(s) 145, 461, 946, 1055
BstMAI GTCTC 2 cut(s) 752, 767
BstMBI GATC 4 cut(s) 142, 458, 943, 1052
BstMWI GCNNNNNNNGC 1 cut(s) 591
BstNI CCWGG 3 cut(s) 330, 920, 1114
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 5 cut(s) 196, 328, 789, 918, 1112
BstSFI CTRYAG 2 cut(s) 255, 586
BstV1I GCAGC 2 cut(s) 450, 603
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 3 cut(s) 142, 458, 1052
BstYI RGATCY 3 cut(s) 142, 458, 1052
BsuRI GGCC 1 cut(s) 1112
BtgI CCRYGG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 4 cut(s) 553, 703, 767, 954
BveI ACCTGC 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 694
CfoI GCGC 1 cut(s) 495
Cfr13I GGNCC 2 cut(s) 855, 1110
Csp6I GTAC 3 cut(s) 75, 784, 1002
CviAII CATG 7 cut(s) 104, 151, 569, 603, 669, 734, 743
CviQI GTAC 3 cut(s) 75, 784, 1002
DdeI CTNAG 6 cut(s) 125, 344, 504, 578, 657, 747
DpnI GATC 4 cut(s) 144, 460, 945, 1054
DpnII GATC 4 cut(s) 142, 458, 943, 1052
DraI TTTAAA 1 cut(s) 10
DrdI GACNNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 319
Eco32I GATATC 1 cut(s) 891
Eco47I GGWCC 1 cut(s) 855
Eco57I CTGAAG 2 cut(s) 123, 426
EcoRI GAATTC 1 cut(s) 1009
EcoRII CCWGG 3 cut(s) 328, 918, 1112
EcoRV GATATC 1 cut(s) 891
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 7 cut(s) 107, 154, 572, 606, 672, 737, 746
FalI AAGNNNNNCTT 6 cut(s) 403, 435, 523, 555, 1013, 1045
FaqI GGGAC 1 cut(s) 79
FatI CATG 7 cut(s) 103, 150, 568, 602, 668, 733, 742
FbaI TGATCA 1 cut(s) 943
Fnu4HI GCNGC 3 cut(s) 439, 592, 714
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 439, 592, 714
FspAI RTGCGCAY 1 cut(s) 494
FspBI CTAG 3 cut(s) 62, 999, 1092
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 1 cut(s) 494
GluI GCNGC 3 cut(s) 439, 592, 714
GsaI CCCAGC 2 cut(s) 279, 471
GsuI CTGGAG 3 cut(s) 153, 791, 941
HaeIII GGCC 1 cut(s) 1112
HapII CCGG 2 cut(s) 197, 791
HhaI GCGC 1 cut(s) 495
Hin1II CATG 7 cut(s) 107, 154, 572, 606, 672, 737, 746
Hin6I GCGC 1 cut(s) 493
HinP1I GCGC 1 cut(s) 493
HinfI GANTC 6 cut(s) 130, 191, 209, 636, 860, 1085
HpaII CCGG 2 cut(s) 197, 791
HphI GGTGA 3 cut(s) 186, 318, 938
Hpy166II GTNNAC 5 cut(s) 59, 77, 326, 731, 739
Hpy188III TCNNGA 5 cut(s) 170, 309, 829, 840, 1030
Hpy8I GTNNAC 5 cut(s) 59, 77, 326, 731, 739
Hpy99I CGWCG 1 cut(s) 324
HpyAV CCTTC 7 cut(s) 144, 237, 273, 401, 508, 621, 1093
HpyCH4III ACNGT 2 cut(s) 362, 548
HpyCH4V TGCA 4 cut(s) 119, 218, 438, 625
HpyF10VI GCNNNNNNNGC 1 cut(s) 591
HpyF3I CTNAG 6 cut(s) 125, 344, 504, 578, 657, 747
Hsp92II CATG 7 cut(s) 107, 154, 572, 606, 672, 737, 746
HspAI GCGC 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 943
Kzo9I GATC 4 cut(s) 142, 458, 943, 1052
LmnI GCTCC 2 cut(s) 654, 672
Lsp1109I GCAGC 2 cut(s) 450, 603
MaeI CTAG 3 cut(s) 62, 999, 1092
MaeIII GTNAC 2 cut(s) 339, 837
MalI GATC 4 cut(s) 144, 460, 945, 1054
MboI GATC 4 cut(s) 142, 458, 943, 1052
MboII GAAGA 5 cut(s) 129, 423, 510, 844, 1108
MflI RGATCY 3 cut(s) 142, 458, 1052
MhlI GDGCHC 3 cut(s) 319, 429, 555
MluCI AATT 9 cut(s) 37, 67, 111, 160, 201, 684, 801, 1009, 1071
MlyI GAGTC 2 cut(s) 124, 645
MmeI TCCRAC 1 cut(s) 793
MnlI CCTC 4 cut(s) 26, 120, 846, 916
MseI TTAA 2 cut(s) 9, 177
MslI CAYNNNNRTG 1 cut(s) 620
MspI CCGG 2 cut(s) 197, 791
MspR9I CCNGG 5 cut(s) 198, 330, 791, 920, 1114
MvaI CCWGG 3 cut(s) 330, 920, 1114
MwoI GCNNNNNNNGC 1 cut(s) 591
NciI CCSGG 2 cut(s) 198, 791
NcoI CCATGG 1 cut(s) 568
NdeII GATC 4 cut(s) 142, 458, 943, 1052
NlaIII CATG 7 cut(s) 107, 154, 572, 606, 672, 737, 746
NlaIV GGNNCC 2 cut(s) 460, 1054
NmuCI GTSAC 1 cut(s) 837
NsbI TGCGCA 1 cut(s) 494
NspI RCATGY 1 cut(s) 737
PciI ACATGT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PfeI GAWTC 4 cut(s) 191, 209, 860, 1085
PfoI TCCNGGA 1 cut(s) 918
PkrI GCNGC 3 cut(s) 440, 593, 715
PleI GAGTC 2 cut(s) 124, 644
PpsI GAGTC 2 cut(s) 124, 644
PscI ACATGT 1 cut(s) 733
Psp6I CCWGG 3 cut(s) 328, 918, 1112
PspFI CCCAGC 2 cut(s) 275, 467
PspGI CCWGG 3 cut(s) 328, 918, 1112
PspN4I GGNNCC 2 cut(s) 460, 1054
PspPI GGNCC 2 cut(s) 855, 1110
PsuI RGATCY 3 cut(s) 142, 458, 1052
RsaI GTAC 3 cut(s) 76, 785, 1003
RsaNI GTAC 3 cut(s) 75, 784, 1002
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 2 cut(s) 9, 177
SatI GCNGC 3 cut(s) 439, 592, 714
Sau3AI GATC 4 cut(s) 142, 458, 943, 1052
Sau96I GGNCC 2 cut(s) 855, 1110
SchI GAGTC 2 cut(s) 124, 645
ScrFI CCNGG 5 cut(s) 198, 330, 791, 920, 1114
SduI GDGCHC 3 cut(s) 319, 429, 555
SfcI CTRYAG 2 cut(s) 255, 586
SinI GGWCC 1 cut(s) 855
SmiMI CAYNNNNRTG 1 cut(s) 620
Sse9I AATT 9 cut(s) 37, 67, 111, 160, 201, 684, 801, 1009, 1071
SsiI CCGC 3 cut(s) 284, 713, 1089
SspI AATATT 1 cut(s) 369
SspMI CTAG 3 cut(s) 62, 999, 1092
StyD4I CCNGG 5 cut(s) 196, 328, 789, 918, 1112
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 2 cut(s) 362, 548
TaqI TCGA 1 cut(s) 364
TasI AATT 9 cut(s) 37, 67, 111, 160, 201, 684, 801, 1009, 1071
TatI WGTACW 1 cut(s) 1001
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 4 cut(s) 191, 209, 860, 1085
Tru1I TTAA 2 cut(s) 9, 177
Tru9I TTAA 2 cut(s) 9, 177
TscAI CASTG 4 cut(s) 553, 703, 774, 961
TseFI GTSAC 1 cut(s) 837
TseI GCWGC 2 cut(s) 438, 591
Tsp45I GTSAC 1 cut(s) 837
TspDTI ATGAA 3 cut(s) 92, 201, 657
TspRI CASTG 4 cut(s) 553, 703, 774, 961
VpaK11BI GGWCC 1 cut(s) 855
XapI RAATTY 3 cut(s) 67, 111, 1009
XceI RCATGY 1 cut(s) 737
XspI CTAG 3 cut(s) 62, 999, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.