Rh5CG337400

Ring finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010718
Physical Location & Seq
Reverse (-)
38554950 .. 38559199
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG337400.1

Sequence Viewer

Length: 993 bp
ATGATGAGCAATTATTCTCCAGATGTTAAAAATTTGGCAGAATCACCGGGAATTGAAGATTCATCCGCTCTAAATCCTTCATTATCCATCCCTACAACTATTTCAATACCAACTGCAGAACCTTCTCCTGCCCCCAGCTATCCACTTTTCTCCAACTCAACCCCATCAAGGCGGGCCCGTCGTTCACCAGGACATCAGTTACTGAGACAGATTTCTGACAGTCGAATATTGGGTTTGAAATCTCCAAATAACAACTCAATATCTGAAGGAAGACAATCTTTTGTACTCTCTAGTTGCAGCAATGACTTGGCAACTGGATCCCAAGCTGGGTCATCTGATGGGTGGTCTATGCACACCTTCTCTGAGCTTGTGGCTTCTTCTCAAAGGGAAAGGTGGTCTTTTGACAGTGAGCACTTTGGTTCTATCCATGGGAAGCAAAGTGGTTGTAGCAGCAGGTTCTCATGTTCTCCTTCCGTAGATATGCAGTCTTGTGGGGTCTGCTCAAAGCTCCTAACTGAAAGAACTTCATGGAGCATCCAGAAAATTATTGCCAGCAGTGAGATCTCTGTGGCGGCTGTGTTGGTTTGTGGACATGTTTACCATGCTGAGTGCTTGGAGACTATGACATTGGAGACTGATAGGTACGACCCGGTTTGCCCAATTTGTATGGTAGGAGAGAAGCAAGTTTGGAAGATGTCAAGAAAAGCGATGAGGTCAGAATCAGATTTAAAAGCAAGAAACCACAAGATATCCAAAAATAGAGTTGTGGATAGCTACTTTGATGGTGAATATGATGTTTTTGATCATCAAAAGAACACTGATAGAAAAGGAAAAGTAGCAGCCAAGTTAGAACCCAGTTCCAGTACAAGGAACTCCTTTACTAAGCCTTTCTTGAAACGGCACTTTTCACTTGGATCCAAGTGGAGTAGATCACTTTCGGAAAATGATTCAGCTAGGAAGAAGGGGTTTTGGGCCAGGTATCGAAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4

Protein Analysis

330

Amino Acids

36.63

Weight (kDa)

9.17

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19680 AT1G75400
fragaria_vesca FvH4_7g07801 FvH4_7g07801 FvH4_7g07801
malus_domestica MD03G1146100.v1.1
pyrus_communis pycom03g10050
rosa_chinensis RchiOBHm_Chr5g0045191
rosa_laevigata RLG00000034342
rosa_multiflora Rmu_co8061458.1_g000001 Rmu_sc0001773.1_g000013
rosa_roxburghii Rroxscaffold_1G00035840
rosa_rugosa Rorug05G0221500.1 Rorug05G0221600
rosa_samantha Rh5AG302900 Rh5BG311400 Rh5CG337400 Rh5DG321600
rosa_wichuraiana Rw5G028110 Rw5G028470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 444
AccBSI CCGCTC 1 cut(s) 68
AciI CCGC 3 cut(s) 66, 172, 572
AclWI GGATC 4 cut(s) 312, 325, 909, 922
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 3 cut(s) 285, 644, 865
AfiI CCNNNNNNNGG 3 cut(s) 168, 327, 867
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 56, 105, 238, 895
AjnI CCWGG 2 cut(s) 187, 974
AluBI AGCT 6 cut(s) 138, 326, 367, 508, 774, 953
AluI AGCT 6 cut(s) 138, 326, 367, 508, 774, 953
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 3 cut(s) 199, 611, 626
AlwI GGATC 4 cut(s) 312, 325, 909, 922
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 2 cut(s) 174, 972
ApaI GGGCCC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 297, 450, 839
ApoI RAATTY 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 174, 175, 972
AsuC2I CCSGG 2 cut(s) 48, 650
AsuHPI GGTGA 3 cut(s) 36, 177, 797
BaeGI GKGCMC 1 cut(s) 178
BamHI GGATCC 2 cut(s) 317, 914
BanII GRGCYC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 309, 462, 851
BccI CCATC 4 cut(s) 95, 172, 332, 776
BceAI ACGGC 1 cut(s) 914
BciT130I CCWGG 2 cut(s) 189, 976
BclI TGATCA 1 cut(s) 802
BcnI CCSGG 2 cut(s) 48, 650
BcoDI GTCTC 3 cut(s) 199, 611, 626
BfaI CTAG 2 cut(s) 291, 954
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 1 cut(s) 444
BglII AGATCT 1 cut(s) 561
BisI GCNGC 4 cut(s) 298, 451, 573, 840
BlsI GCNGC 4 cut(s) 299, 452, 574, 841
Bme1390I CCNGG 4 cut(s) 48, 189, 650, 976
BmgT120I GGNCC 3 cut(s) 174, 175, 972
BmiI GGNNCC 3 cut(s) 176, 319, 916
BmrFI CCNGG 4 cut(s) 48, 189, 650, 976
BmrI ACTGGG 1 cut(s) 849
BmsI GCATC 1 cut(s) 543
BmuI ACTGGG 1 cut(s) 849
BpiI GAAGAC 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 48, 650
BsaJI CCNNGG 1 cut(s) 427
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 327, 867
Bse1I ACTGG 3 cut(s) 319, 855, 861
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 189, 976
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 3 cut(s) 62, 87, 534
BseLI CCNNNNNNNGG 3 cut(s) 168, 327, 867
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 194, 354, 597
BseNI ACTGG 3 cut(s) 319, 855, 861
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 3 cut(s) 309, 462, 851
BseYI CCCAGC 2 cut(s) 134, 326
BshFI GGCC 2 cut(s) 176, 974
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 2 cut(s) 47, 650
BslI CCNNNNNNNGG 3 cut(s) 168, 327, 867
BsmAI GTCTC 3 cut(s) 199, 611, 626
BsnI GGCC 2 cut(s) 176, 974
Bsp120I GGGCCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 178, 414
Bsp143I GATC 5 cut(s) 317, 561, 802, 914, 929
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 3 cut(s) 66, 172, 572
BspANI GGCC 2 cut(s) 176, 974
BspCNI CTCAG 3 cut(s) 195, 355, 598
BspLI GGNNCC 3 cut(s) 176, 319, 916
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 4 cut(s) 312, 325, 909, 922
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 307
BsrI ACTGG 3 cut(s) 319, 855, 861
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 5 cut(s) 317, 561, 802, 914, 929
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 2 cut(s) 189, 976
Bst4CI ACNGT 2 cut(s) 221, 407
BstC8I GCNNGC 2 cut(s) 174, 553
BstDEI CTNAG 4 cut(s) 203, 363, 606, 882
BstDSI CCRYGG 1 cut(s) 427
BstF5I GGATG 3 cut(s) 62, 87, 534
BstKTI GATC 5 cut(s) 320, 564, 805, 917, 932
BstMAI GTCTC 3 cut(s) 199, 611, 626
BstMBI GATC 5 cut(s) 317, 561, 802, 914, 929
BstNI CCWGG 2 cut(s) 189, 976
BstNSI RCATGY 1 cut(s) 596
BstSCI CCNGG 4 cut(s) 46, 187, 648, 974
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 309, 462, 851
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 3 cut(s) 317, 561, 914
BstYI RGATCY 3 cut(s) 317, 561, 914
BsuRI GGCC 2 cut(s) 176, 974
BtgI CCRYGG 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 3 cut(s) 62, 87, 534
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 3 cut(s) 412, 562, 816
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 174, 553
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 174, 175, 972
Csp6I GTAC 3 cut(s) 284, 643, 864
CviAII CATG 5 cut(s) 428, 462, 528, 593, 602
CviQI GTAC 3 cut(s) 284, 643, 864
DdeI CTNAG 4 cut(s) 203, 363, 606, 882
DpnI GATC 5 cut(s) 319, 563, 804, 916, 931
DpnII GATC 5 cut(s) 317, 561, 802, 914, 929
DraI TTTAAA 1 cut(s) 729
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 750
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 2 cut(s) 187, 974
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 5 cut(s) 431, 465, 531, 596, 605
FalI AAGNNNNNCTT 6 cut(s) 262, 294, 382, 414, 875, 907
FatI CATG 5 cut(s) 427, 461, 527, 592, 601
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 4 cut(s) 298, 451, 573, 840
FokI GGATG 3 cut(s) 49, 74, 521
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 4 cut(s) 298, 451, 573, 840
FspBI CTAG 2 cut(s) 291, 954
GluI GCNGC 4 cut(s) 298, 451, 573, 840
GsaI CCCAGC 2 cut(s) 138, 330
HaeIII GGCC 2 cut(s) 176, 974
HapII CCGG 2 cut(s) 47, 650
Hin1II CATG 5 cut(s) 431, 465, 531, 596, 605
HinfI GANTC 4 cut(s) 41, 59, 719, 947
HpaII CCGG 2 cut(s) 47, 650
HphI GGTGA 3 cut(s) 36, 177, 797
Hpy166II GTNNAC 3 cut(s) 185, 590, 598
Hpy188I TCNGA 7 cut(s) 217, 265, 337, 364, 718, 724, 940
Hpy188III TCNNGA 4 cut(s) 20, 538, 699, 892
Hpy8I GTNNAC 3 cut(s) 185, 590, 598
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 6 cut(s) 87, 132, 260, 367, 480, 955
HpyCH4III ACNGT 2 cut(s) 221, 407
HpyCH4V TGCA 4 cut(s) 116, 297, 352, 484
HpyF3I CTNAG 4 cut(s) 203, 363, 606, 882
Hsp92II CATG 5 cut(s) 431, 465, 531, 596, 605
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 5 cut(s) 317, 561, 802, 914, 929
LmnI GCTCC 2 cut(s) 513, 531
Lsp1109I GCAGC 3 cut(s) 309, 462, 851
LweI GCATC 1 cut(s) 543
MaeI CTAG 2 cut(s) 291, 954
MaeIII GTNAC 1 cut(s) 198
MalI GATC 5 cut(s) 319, 563, 804, 916, 931
MbiI CCGCTC 1 cut(s) 68
MboI GATC 5 cut(s) 317, 561, 802, 914, 929
MboII GAAGA 5 cut(s) 68, 282, 369, 703, 970
MflI RGATCY 3 cut(s) 317, 561, 914
MhlI GDGCHC 2 cut(s) 178, 414
MluCI AATT 5 cut(s) 10, 31, 51, 543, 660
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 1 cut(s) 705
MseI TTAA 2 cut(s) 27, 728
MspI CCGG 2 cut(s) 47, 650
MspR9I CCNGG 4 cut(s) 48, 189, 650, 976
MvaI CCWGG 2 cut(s) 189, 976
NciI CCSGG 2 cut(s) 48, 650
NcoI CCATGG 1 cut(s) 427
NdeII GATC 5 cut(s) 317, 561, 802, 914, 929
NlaIII CATG 5 cut(s) 431, 465, 531, 596, 605
NlaIV GGNNCC 3 cut(s) 176, 319, 916
NspI RCATGY 1 cut(s) 596
PciI ACATGT 1 cut(s) 592
PfeI GAWTC 4 cut(s) 41, 59, 719, 947
PkrI GCNGC 4 cut(s) 299, 452, 574, 841
PscI ACATGT 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 187, 974
PspFI CCCAGC 2 cut(s) 134, 326
PspGI CCWGG 2 cut(s) 187, 974
PspN4I GGNNCC 3 cut(s) 176, 319, 916
PspOMI GGGCCC 1 cut(s) 174
PspPI GGNCC 3 cut(s) 174, 175, 972
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 3 cut(s) 317, 561, 914
RsaI GTAC 3 cut(s) 285, 644, 865
RsaNI GTAC 3 cut(s) 284, 643, 864
SaqAI TTAA 2 cut(s) 27, 728
SatI GCNGC 4 cut(s) 298, 451, 573, 840
Sau3AI GATC 5 cut(s) 317, 561, 802, 914, 929
Sau96I GGNCC 3 cut(s) 174, 175, 972
ScrFI CCNGG 4 cut(s) 48, 189, 650, 976
SduI GDGCHC 2 cut(s) 178, 414
SfaNI GCATC 1 cut(s) 543
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 10, 31, 51, 543, 660
SsiI CCGC 3 cut(s) 66, 172, 572
SspI AATATT 1 cut(s) 228
SspMI CTAG 2 cut(s) 291, 954
StyD4I CCNGG 4 cut(s) 46, 187, 648, 974
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 221, 407
TaqI TCGA 2 cut(s) 223, 982
TasI AATT 5 cut(s) 10, 31, 51, 543, 660
TatI WGTACW 2 cut(s) 283, 863
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 4 cut(s) 41, 59, 719, 947
Tru1I TTAA 2 cut(s) 27, 728
Tru9I TTAA 2 cut(s) 27, 728
TscAI CASTG 3 cut(s) 412, 562, 823
TseI GCWGC 3 cut(s) 297, 450, 839
TspDTI ATGAA 3 cut(s) 51, 69, 516
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 3 cut(s) 412, 562, 823
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 596
XspI CTAG 2 cut(s) 291, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.