AT1G20010

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
6937719 .. 6940832
3114 bp
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UTR
Exon/CDS
Intron
AT1G20010.1

Sequence Viewer

Length: 1350 bp
ATGAGAGAGATCCTTCACATTCAAGGTGGTCAATGCGGTAACCAGATTGGTTCCAAGTTCTGGGAAGTCATCTGCGACGAGCACGGCATCGATTCCACCGGACGTTACAGTGGAGACACTGCAGATCTCCAGCTTGAACGTATCAATGTCTATTACAATGAAGCTTCAGGTGGAAGATACGTTCCTCGTGCTGTTCTTATGGATCTTGAGCCTGGTACTATGGATAGTATCAGATCCGGACCGTTTGGTCAGATCTTCCGTCCTGATAACTTTGTCTTTGGTCAGTCTGGTGCTGGTAATAATTGGGCTAAAGGTCATTACACTGAAGGTGCTGAACTTATTGATGCTGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAACTGCGATTGCCTTCAAGGGTTTCAGGTGTGCCATTCGTTGGGAGGAGGCACAGGTTCAGGAATGGGAACACTATTGATATCGAAGATCCGAGAGGAGTATCCAGACAGAATGATGCTCACTTTCTCTGTTTTCCCATCTCCTAAAGTCTCTGACACAGTCGTTGAGCCTTACAATGCAACTCTCTCTGTCCATCAGCTTGTAGAGAACGCTGATGAATGCATGGTCCTCGACAATGAAGCTCTCTACGATATCTGCTTCCGTACCCTCAAACTCAGCACTCCTAGCTTTGGAGACTTGAACCATTTGATCTCCGCAACAATGAGCGGTGTGACTTGCTCCTTAAGGTTCCCCGGACAACTAAACTCTGACCTCAGGAAACTCGCGGTGAACCTAATCCCATTCCCTCGTCTCCATTTCTTCATGGTGGGTTTTGCGCCCCTCACTTCCCGTGGCTCGCAACAATACATCTCACTCACCGTTCCTGAGCTGACTCAACAAATGTGGGACTCCAAAAACATGATGTGTGCAGCTGATCCACGTCACGGACGTTACCTCACAGCCTCTGCTATTTTCAGAGGACAGATGAGCACAAAAGAAGTCGACGAGCAAATCCTAAACATACAGAACAAGAACTCGTCTTACTTCGTTGAGTGGATCCCAAACAACGTGAAATCCAGCGTTTGTGATATCCCACCAAAGGGGCTCAAAATGGCGGCGACGTTTGTGGGTAACTCGACGTCGATTCAAGAAATGTTCAGGAGAGTGAGTGAGCAGTTCACGGCTATGTTTAGGCGTAAAGCGTTTCTGCATTGGTACACAGGAGAAGGAATGGACGAAATGGAGTTTACGGAAGCTGAGAGCAATATGAATGATTTGGTCGCTGAATACCAACAGTACCAAGATGCTACTGCTGATGAGGAAGGTGAGTATGATGTTGAAGAAGAAGAGGAGGGAGATTATGAGACTTGA

Protein Analysis

449

Amino Acids

50.34

Weight (kDa)

4.66

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 212 3.8e-65 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 262 - 383 8.9e-40 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011653)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 246
AatII GACGTC 1 cut(s) 1121
AccB7I CCANNNNNTGG 2 cut(s) 60, 418
AccBSI CCGCTC 1 cut(s) 705
AccI GTMKAC 1 cut(s) 981
AccII CGCG 1 cut(s) 764
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 5 cut(s) 36, 693, 705, 764, 1094
AclWI GGATC 7 cut(s) 4, 210, 228, 460, 908, 1030, 1043
AcuI CTGAAG 2 cut(s) 150, 345
AcyI GRCGYC 1 cut(s) 1118
AfaI GTAC 4 cut(s) 217, 643, 1196, 1277
AfiI CCNNNNNNNGG 6 cut(s) 60, 418, 668, 923, 1078, 1079
AflII CTTAAG 1 cut(s) 721
AgsI TTSAA 6 cut(s) 23, 137, 395, 679, 1127, 1319
AjiI CACGTC 1 cut(s) 920
AjnI CCWGG 1 cut(s) 211
AloI GAACNNNNNNTCC 2 cut(s) 165, 197
AluBI AGCT 9 cut(s) 133, 164, 374, 577, 620, 666, 868, 911, 1235
AluI AGCT 9 cut(s) 133, 164, 374, 577, 620, 666, 868, 911, 1235
Alw21I GWGCWC 2 cut(s) 84, 971
Alw26I GTCTC 5 cut(s) 108, 532, 666, 794, 1337
AlwI GGATC 7 cut(s) 4, 210, 228, 460, 908, 1030, 1043
AlwNI CAGNNNCTG 1 cut(s) 944
Aor13HI TCCGGA 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 908
AspLEI GCGC 1 cut(s) 817
AspS9I GGNCC 2 cut(s) 239, 604
AsuC2I CCSGG 1 cut(s) 732
AsuHPI GGTGA 3 cut(s) 778, 847, 1316
AvaII GGWCC 2 cut(s) 239, 604
AxyI CCTNAGG 1 cut(s) 752
BamHI GGATCC 1 cut(s) 1035
BanII GRGCYC 1 cut(s) 1086
BauI CACGAG 1 cut(s) 186
Bbv12I GWGCWC 2 cut(s) 84, 971
BbvI GCAGC 1 cut(s) 920
BccI CCATC 2 cut(s) 523, 579
BceAI ACGGC 2 cut(s) 100, 1176
BcgI CGANNNNNNTGC 2 cut(s) 589, 623
BciT130I CCWGG 1 cut(s) 213
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 1 cut(s) 732
BcoDI GTCTC 5 cut(s) 108, 532, 666, 794, 1337
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 1 cut(s) 120
BfrI CTTAAG 1 cut(s) 721
BfuI GTATCC 1 cut(s) 489
BglII AGATCT 2 cut(s) 124, 252
BisI GCNGC 2 cut(s) 909, 1095
BlsI GCNGC 2 cut(s) 910, 1096
Bme1390I CCNGG 2 cut(s) 213, 732
Bme18I GGWCC 2 cut(s) 239, 604
BmgBI CACGTC 1 cut(s) 920
BmgT120I GGNCC 2 cut(s) 239, 604
BmiI GGNNCC 3 cut(s) 52, 728, 1037
BmrFI CCNGG 2 cut(s) 213, 732
BmsI GCATC 4 cut(s) 96, 334, 483, 1273
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 864
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 732
Bsa29I ATCGAT 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 1118
BsaJI CCNNGG 2 cut(s) 730, 829
BsaWI WCCGGW 2 cut(s) 98, 236
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 418, 668, 923, 1078, 1079
Bse21I CCTNAGG 1 cut(s) 752
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 730, 829
BseLI CCNNNNNNNGG 6 cut(s) 60, 418, 668, 923, 1078, 1079
BseMII CTCAG 5 cut(s) 366, 667, 766, 855, 1227
BseRI GAGGAG 3 cut(s) 438, 488, 1343
BseXI GCAGC 1 cut(s) 920
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 764
BshVI ATCGAT 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 84, 971
BsiSI CCGG 3 cut(s) 99, 237, 732
BslFI GGGAC 1 cut(s) 899
BslI CCNNNNNNNGG 6 cut(s) 60, 418, 668, 923, 1078, 1079
BsmAI GTCTC 5 cut(s) 108, 532, 666, 794, 1337
BsmBI CGTCTC 1 cut(s) 794
BsmFI GGGAC 1 cut(s) 899
BsmI GAATGC 1 cut(s) 602
Bsp1286I GDGCHC 3 cut(s) 84, 971, 1086
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
BspACI CCGC 5 cut(s) 36, 693, 705, 764, 1094
BspCNI CTCAG 5 cut(s) 367, 666, 765, 856, 1228
BspDI ATCGAT 1 cut(s) 90
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 1 cut(s) 764
BspLI GGNNCC 3 cut(s) 52, 728, 1037
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 7 cut(s) 4, 210, 228, 460, 908, 1030, 1043
BspTI CTTAAG 1 cut(s) 721
BsrBI CCGCTC 1 cut(s) 705
BssECI CCNNGG 2 cut(s) 730, 829
BssMI GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
BssNI GRCGYC 1 cut(s) 1118
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 5 cut(s) 110, 243, 538, 859, 1275
Bst6I CTCTTC 1 cut(s) 1320
BstACI GRCGYC 1 cut(s) 1118
BstAFI CTTAAG 1 cut(s) 721
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 5 cut(s) 375, 653, 752, 864, 1236
BstDSI CCRYGG 1 cut(s) 829
BstEII GGTNACC 1 cut(s) 38
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 9 cut(s) 12, 127, 205, 236, 255, 468, 690, 916, 1038
BstMAI GTCTC 5 cut(s) 108, 532, 666, 794, 1337
BstMBI GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
BstMWI GCNNNNNNNGC 1 cut(s) 663
BstNI CCWGG 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 211, 730
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 1 cut(s) 920
BstX2I RGATCY 7 cut(s) 9, 124, 202, 233, 252, 465, 1035
BstYI RGATCY 7 cut(s) 9, 124, 202, 233, 252, 465, 1035
Bsu15I ATCGAT 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 752
BsuI GTATCC 1 cut(s) 489
BsuTUI ATCGAT 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 829
BtrI CACGTC 1 cut(s) 920
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 3 cut(s) 115, 117, 321
Cac8I GCNNGC 1 cut(s) 836
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 817
Cfr13I GGNCC 2 cut(s) 239, 604
ClaI ATCGAT 1 cut(s) 90
CpoI CGGWCCG 1 cut(s) 239
Csp6I GTAC 4 cut(s) 216, 642, 1195, 1276
CspCI CAANNNNNGTGG 2 cut(s) 863, 898
CspI CGGWCCG 1 cut(s) 239
CviAII CATG 3 cut(s) 601, 802, 898
CviQI GTAC 4 cut(s) 216, 642, 1195, 1276
DdeI CTNAG 5 cut(s) 375, 653, 752, 864, 1236
DpnI GATC 9 cut(s) 11, 126, 204, 235, 254, 467, 689, 915, 1037
DpnII GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
DrdI GACNNNNNNGTC 1 cut(s) 246
DseDI GACNNNNNNGTC 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 1320
EarI CTCTTC 1 cut(s) 1320
Eco24I GRGCYC 1 cut(s) 1086
Eco32I GATATC 3 cut(s) 459, 631, 1069
Eco47I GGWCC 2 cut(s) 239, 604
Eco57I CTGAAG 2 cut(s) 150, 345
Eco81I CCTNAGG 1 cut(s) 752
Eco91I GGTNACC 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 3 cut(s) 459, 631, 1069
EcoT22I ATGCAT 1 cut(s) 602
EcoT38I GRGCYC 1 cut(s) 1086
Esp3I CGTCTC 1 cut(s) 794
FaeI CATG 3 cut(s) 604, 805, 901
FaqI GGGAC 1 cut(s) 899
FatI CATG 3 cut(s) 600, 801, 897
FblI GTMKAC 1 cut(s) 981
Fnu4HI GCNGC 2 cut(s) 909, 1095
FriOI GRGCYC 1 cut(s) 1086
Fsp4HI GCNGC 2 cut(s) 909, 1095
FspBI CTAG 1 cut(s) 663
GlaI GCGC 1 cut(s) 816
GluI GCNGC 2 cut(s) 909, 1095
GsuI CTGGAG 1 cut(s) 113
HapII CCGG 3 cut(s) 99, 237, 732
HhaI GCGC 1 cut(s) 817
Hin1I GRCGYC 1 cut(s) 1118
Hin1II CATG 3 cut(s) 604, 805, 901
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HincII GTYRAC 1 cut(s) 982
HindII GTYRAC 1 cut(s) 982
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 4 cut(s) 92, 871, 887, 1123
HpaII CCGG 3 cut(s) 99, 237, 732
HphI GGTGA 3 cut(s) 778, 847, 1316
Hpy166II GTNNAC 5 cut(s) 769, 982, 1158, 1197, 1227
Hpy188I TCNGA 6 cut(s) 233, 252, 470, 532, 748, 956
Hpy8I GTNNAC 5 cut(s) 769, 982, 1158, 1197, 1227
Hpy99I CGWCG 5 cut(s) 80, 986, 1102, 1120, 1123
HpyAV CCTTC 5 cut(s) 23, 320, 401, 1199, 1295
HpyCH4III ACNGT 5 cut(s) 110, 243, 538, 859, 1275
HpyCH4IV ACGT 8 cut(s) 103, 139, 180, 919, 928, 1047, 1100, 1118
HpyCH4V TGCA 5 cut(s) 122, 557, 600, 908, 1189
HpyF10VI GCNNNNNNNGC 1 cut(s) 663
HpyF3I CTNAG 5 cut(s) 375, 653, 752, 864, 1236
HpySE526I ACGT 8 cut(s) 103, 139, 180, 919, 928, 1047, 1100, 1118
Hsp92I GRCGYC 1 cut(s) 1118
Hsp92II CATG 3 cut(s) 604, 805, 901
HspAI GCGC 1 cut(s) 815
Kpn2I TCCGGA 1 cut(s) 236
Kzo9I GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
LmnI GCTCC 1 cut(s) 722
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 4 cut(s) 96, 334, 483, 1273
MaeI CTAG 1 cut(s) 663
MaeII ACGT 8 cut(s) 103, 139, 180, 919, 928, 1047, 1100, 1118
MaeIII GTNAC 6 cut(s) 38, 104, 709, 920, 929, 1109
MalI GATC 9 cut(s) 11, 126, 204, 235, 254, 467, 689, 915, 1037
MbiI CCGCTC 1 cut(s) 705
MboI GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
MboII GAAGA 7 cut(s) 186, 247, 475, 790, 1331, 1334, 1337
MflI RGATCY 7 cut(s) 9, 124, 202, 233, 252, 465, 1035
MhlI GDGCHC 3 cut(s) 84, 971, 1086
MluCI AATT 1 cut(s) 301
MlyI GAGTC 2 cut(s) 865, 881
Mph1103I ATGCAT 1 cut(s) 602
MroI TCCGGA 1 cut(s) 236
MseI TTAA 1 cut(s) 722
MslI CAYNNNNRTG 1 cut(s) 1163
MspA1I CMGCKG 1 cut(s) 911
MspCI CTTAAG 1 cut(s) 721
MspI CCGG 3 cut(s) 99, 237, 732
MspR9I CCNGG 2 cut(s) 213, 732
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 764
MwoI GCNNNNNNNGC 1 cut(s) 663
NciI CCSGG 1 cut(s) 732
NdeII GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
NlaIII CATG 3 cut(s) 604, 805, 901
NlaIV GGNNCC 3 cut(s) 52, 728, 1037
NmuCI GTSAC 2 cut(s) 709, 920
NsiI ATGCAT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 925
PctI GAATGC 1 cut(s) 602
PfeI GAWTC 2 cut(s) 92, 1123
PflFI GACNNNGTC 1 cut(s) 536
PflMI CCANNNNNTGG 2 cut(s) 60, 418
PkrI GCNGC 2 cut(s) 910, 1096
PleI GAGTC 2 cut(s) 865, 881
PpsI GAGTC 2 cut(s) 865, 881
Psp6I CCWGG 1 cut(s) 211
PspEI GGTNACC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 52, 728, 1037
PspPI GGNCC 2 cut(s) 239, 604
PsrI GAACNNNNNNTAC 2 cut(s) 1004, 1036
PstI CTGCAG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 7 cut(s) 9, 124, 202, 233, 252, 465, 1035
PsyI GACNNNGTC 1 cut(s) 536
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 4 cut(s) 217, 643, 1196, 1277
RsaNI GTAC 4 cut(s) 216, 642, 1195, 1276
RseI CAYNNNNRTG 1 cut(s) 1163
Rsr2I CGGWCCG 1 cut(s) 239
RsrII CGGWCCG 1 cut(s) 239
SalI GTCGAC 1 cut(s) 980
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 2 cut(s) 909, 1095
Sau3AI GATC 9 cut(s) 9, 124, 202, 233, 252, 465, 687, 913, 1035
Sau96I GGNCC 2 cut(s) 239, 604
SchI GAGTC 2 cut(s) 865, 881
ScrFI CCNGG 2 cut(s) 213, 732
SduI GDGCHC 3 cut(s) 84, 971, 1086
SfaNI GCATC 4 cut(s) 96, 334, 483, 1273
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 239, 604
SmiMI CAYNNNNRTG 1 cut(s) 1163
SmlI CTYRAG 2 cut(s) 206, 721
SmoI CTYRAG 2 cut(s) 206, 721
Sse9I AATT 1 cut(s) 301
SsiI CCGC 5 cut(s) 36, 693, 705, 764, 1094
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 2 cut(s) 211, 730
TaaI ACNGT 5 cut(s) 110, 243, 538, 859, 1275
TaiI ACGT 8 cut(s) 106, 142, 183, 922, 931, 1050, 1103, 1121
TaqI TCGA 6 cut(s) 90, 461, 609, 981, 1115, 1121
TasI AATT 1 cut(s) 301
TauI GCSGC 1 cut(s) 1097
TfiI GAWTC 2 cut(s) 92, 1123
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 3 cut(s) 115, 124, 328
TseFI GTSAC 2 cut(s) 709, 920
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 2 cut(s) 709, 920
TspDTI ATGAA 5 cut(s) 174, 609, 630, 790, 1262
TspGWI ACGGA 4 cut(s) 248, 629, 939, 1244
TspRI CASTG 3 cut(s) 115, 124, 328
Tth111I GACNNNGTC 1 cut(s) 536
Van91I CCANNNNNTGG 2 cut(s) 60, 418
Vha464I CTTAAG 1 cut(s) 721
VpaK11BI GGWCC 2 cut(s) 239, 604
XmiI GTMKAC 1 cut(s) 981
XspI CTAG 1 cut(s) 663
ZraI GACGTC 1 cut(s) 1119
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.