Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011653

Physical Location & Seq

Genomic Coordinates Reverse (-)

28451138 .. 28453820

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAGAGAAATCCTCCACGTCCAAGGCGGCCAATGCGGTAACCAAATCGGTTCCAAATTCTGGGAAGTTATCTGCGACGAACACGGCGTTGATCCCACCGGACGTTACAACGGTGATTCCGCCGATCTTCAGCTCGAACGTATCAATGTTTATTACAATGAAGCTTCTGGTGGTCGTTACGTTCCTCGTGCTGTTCTCATGGATCTCGAGCCTGGTACTATGGATAGTATCAGATCTGGTCCCTACGGTCAGATTTTCCGTCCTGATAACTTCGTCTTTGGTCAATCCGGTGCCGGAAATAATTGGGCGAAAGGTCATTATACTGAAGGTGCTGAACTTATTGATGCTGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTGATTGCCTTCAAGGGTTTCAAGTATGTCACTCTCTTGGAGGAGGCACGGGTTCAGGAATGGGAACTCTCTTGATATCAAAGATCCGTGAGGAATACCCAGACAGAATGATGCTCACATTCTCTGTTTTCCCATCTCCAAAGGTCTCAGACACAGTCGTTGAGCCGTACAATGCAACTCTCTCAGTCCACCAACTTGTAGAGAATGCTGATGAATGCATGGTCCTCGACAACGAAGCTCTTTACGATATCTGTTTCCGCACTCTCAAACTCAGCACTCCTAGCTTTGGAGACTTGAACCACTTGATCTCCGCAACTATGAGTGGTGTGACTTGCTCTTTAAGATTCCCTGGACAACTCAACTCTGACCTTAGGAAACTCGCCGTGAACCTTATCCCATTCCCTCGTCTACATTTCTTCATGGTTGGTTTCGCCCCTCTCACTTCCCGTGGCTCTCAACAGTACATCTCTCTCACAGTCCCGGAGCTGACACAGCAAATGTGGGACGCTAAGAACATGATGTGTGCAGCTGATCCACGCCACGGACGTTACCTCACAGCTTCAGCCATGTTCCGAGGAAAAATGAGCACAAAGGAAGTGGACGAACAGATCCTAAATGTCCAGAACAAGAACTCATCCTACTTTGTTGAATGGATCCCAAACAATGTGAAGTCCAGCGTCTGCGACATTCCACCAACTGGAATCAAAATGGCTTCCACGTTTGTCGGAAACTCGACTTCGATCCAGGAAATGTTCAGGAGAGTAAGCGAACAGTTCACGGCTATGTTCAGGCGTAAAGCTTTCTTGCATTGGTACACAGGAGAAGGAATGGACGAGATGGAGTTCACTGAAGCAGAGAGCAACATGAATGATCTGGTCTCTGAATACCAACAATACCAAGATGCTACCGCTGATGAAGAAGACGAATATGATGAAGAAGAAGAACAAGTTTACGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009653 GO:0009826 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0030312 GO:0031090 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

447

Amino Acids

50.22

Weight (kDa)

4.68

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	3 - 212	1.5e-64	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	262 - 383	2.3e-39	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011653)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20010 AT1G75780
fragaria_vesca	FvH4_2g38400 FvH4_2g38400
malus_domestica	MD08G1012800.v1.1 MD15G1011800.v1.1
prunus_persica	Prupe.1G364800_v2.0.a1
pyrus_communis	pycom08g01090 pycom15g01040
rosa_chinensis	RchiOBHm_Chr6g0302901 RchiOBHm_Chr7g0219301
rosa_laevigata	RLG00000011125
rosa_multiflora	Rmu_ssc0000460.1_g000016
rosa_rugosa	Rorug06G0318000
rosa_samantha	Rh6AG431600 Rh6BG471000 Rh6CG444000 Rh6DG430800
rosa_wichuraiana	Rw6G037410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	2 cut(s)	60, 1079
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	6 cut(s)	27, 36, 120, 640, 693, 1290
AclWI	GGATC	8 cut(s)	86, 210, 460, 908, 985, 1030, 1043, 1117
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	4 cut(s)	113, 345, 927, 1251
AfaI	GTAC	4 cut(s)	217, 551, 845, 1196
AfiI	CCNNNNNNNGG	4 cut(s)	60, 668, 923, 1079
AgsI	TTSAA	4 cut(s)	395, 404, 679, 1031
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	3 cut(s)	211, 730, 1125
AluBI	AGCT	9 cut(s)	133, 164, 374, 620, 666, 868, 911, 941, 1181
AluI	AGCT	9 cut(s)	133, 164, 374, 620, 666, 868, 911, 941, 1181
Alw21I	GWGCWC	1 cut(s)	971
Alw26I	GTCTC	3 cut(s)	532, 666, 1264
AlwI	GGATC	8 cut(s)	86, 210, 460, 908, 985, 1030, 1043, 1117
AlwNI	CAGNNNCTG	1 cut(s)	1062
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	908
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	2 cut(s)	239, 604
AsuC2I	CCSGG	1 cut(s)	863
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	239, 604
AxyI	CCTNAGG	1 cut(s)	752
BamHI	GGATCC	1 cut(s)	1035
BanI	GGYRCC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	1308
Bbv12I	GWGCWC	1 cut(s)	971
BbvI	GCAGC	1 cut(s)	920
BccI	CCATC	2 cut(s)	523, 1213
BceAI	ACGGC	4 cut(s)	100, 532, 749, 1176
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	3 cut(s)	213, 732, 1127
BcnI	CCSGG	1 cut(s)	863
BcoDI	GTCTC	3 cut(s)	532, 666, 1264
BfaI	CTAG	1 cut(s)	663
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	2 cut(s)	28, 909
BlsI	GCNGC	2 cut(s)	29, 910
Bme1390I	CCNGG	4 cut(s)	213, 732, 863, 1127
Bme18I	GGWCC	2 cut(s)	239, 604
BmeT110I	CYCGRG	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	239, 604
BmiI	GGNNCC	4 cut(s)	52, 241, 292, 1037
BmrFI	CCNGG	4 cut(s)	213, 732, 863, 1127
BmsI	GCATC	3 cut(s)	334, 483, 1273
BpiI	GAAGAC	1 cut(s)	1308
BplI	GAGNNNNNCTC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	863
BsaI	GGTCTC	2 cut(s)	532, 1264
BsaJI	CCNNGG	5 cut(s)	22, 730, 829, 922, 955
BsaWI	WCCGGW	2 cut(s)	98, 287
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 668, 923, 1079
Bse1I	ACTGG	1 cut(s)	1084
Bse21I	CCTNAGG	1 cut(s)	752
BseBI	CCWGG	3 cut(s)	213, 732, 1127
BseDI	CCNNGG	5 cut(s)	22, 730, 829, 922, 955
BseGI	GGATG	1 cut(s)	1016
BseLI	CCNNNNNNNGG	4 cut(s)	60, 668, 923, 1079
BseMII	CTCAG	4 cut(s)	366, 543, 579, 667
BseNI	ACTGG	1 cut(s)	1084
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	920
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	971
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	4 cut(s)	99, 288, 294, 863
BslFI	GGGAC	3 cut(s)	225, 845, 899
BslI	CCNNNNNNNGG	4 cut(s)	60, 668, 923, 1079
BsmAI	GTCTC	3 cut(s)	532, 666, 1264
BsmFI	GGGAC	3 cut(s)	225, 845, 899
BsmI	GAATGC	2 cut(s)	592, 602
BsnI	GGCC	1 cut(s)	30
Bso31I	GGTCTC	2 cut(s)	532, 1264
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	971
BspACI	CCGC	6 cut(s)	27, 36, 120, 640, 693, 1290
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	4 cut(s)	367, 542, 578, 666
BspLI	GGNNCC	4 cut(s)	52, 241, 292, 1037
BspPI	GGATC	8 cut(s)	86, 210, 460, 908, 985, 1030, 1043, 1117
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	2 cut(s)	532, 1264
BsrI	ACTGG	1 cut(s)	1084
BssECI	CCNNGG	5 cut(s)	22, 730, 829, 922, 955
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	22
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	213, 732, 1127
Bst4CI	ACNGT	7 cut(s)	113, 248, 383, 538, 843, 859, 1155
BstDEI	CTNAG	6 cut(s)	375, 529, 565, 653, 752, 891
BstDSI	CCRYGG	2 cut(s)	829, 922
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	1016
BstMAI	GTCTC	3 cut(s)	532, 666, 1264
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 663, 874
BstNI	CCWGG	3 cut(s)	213, 732, 1127
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	4 cut(s)	211, 730, 861, 1125
BstV1I	GCAGC	1 cut(s)	920
BstV2I	GAAGAC	1 cut(s)	1308
BstX2I	RGATCY	5 cut(s)	202, 233, 465, 990, 1035
BstYI	RGATCY	5 cut(s)	202, 233, 465, 990, 1035
Bsu36I	CCTNAGG	1 cut(s)	752
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	2 cut(s)	829, 922
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	1016
BtsIMutI	CAGTG	1 cut(s)	1227
CaiI	CAGNNNCTG	1 cut(s)	1062
Cfr13I	GGNCC	2 cut(s)	239, 604
CseI	GACGC	2 cut(s)	896, 1048
Csp6I	GTAC	4 cut(s)	216, 550, 844, 1195
CspCI	CAANNNNNGTGG	2 cut(s)	960, 995
CviAII	CATG	6 cut(s)	199, 601, 802, 898, 949, 1246
CviQI	GTAC	4 cut(s)	216, 550, 844, 1195
DdeI	CTNAG	6 cut(s)	375, 529, 565, 653, 752, 891
EaeI	YGGCCR	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	22
Eco31I	GGTCTC	2 cut(s)	532, 1264
Eco32I	GATATC	2 cut(s)	459, 631
Eco47I	GGWCC	2 cut(s)	239, 604
Eco57I	CTGAAG	4 cut(s)	113, 345, 927, 1251
Eco81I	CCTNAGG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	206
Eco91I	GGTNACC	1 cut(s)	38
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	211, 730, 1125
EcoRV	GATATC	2 cut(s)	459, 631
EcoT14I	CCWWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	6 cut(s)	202, 604, 805, 901, 952, 1249
FaqI	GGGAC	3 cut(s)	225, 845, 899
FatI	CATG	6 cut(s)	198, 600, 801, 897, 948, 1245
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	28, 909
FokI	GGATG	1 cut(s)	1003
Fsp4HI	GCNGC	2 cut(s)	28, 909
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	2 cut(s)	28, 909
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	4 cut(s)	99, 288, 294, 863
HgaI	GACGC	2 cut(s)	896, 1048
Hin1II	CATG	6 cut(s)	202, 604, 805, 901, 952, 1249
HindIII	AAGCTT	2 cut(s)	162, 1179
HinfI	GANTC	4 cut(s)	116, 726, 1083, 1337
HpaII	CCGG	4 cut(s)	99, 288, 294, 863
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	8 cut(s)	571, 769, 791, 982, 1158, 1197, 1227, 1333
Hpy188I	TCNGA	7 cut(s)	233, 252, 532, 748, 956, 1109, 1264
Hpy188III	TCNNGA	8 cut(s)	206, 263, 353, 438, 454, 1003, 1138, 1341
Hpy8I	GTNNAC	8 cut(s)	571, 769, 791, 982, 1158, 1197, 1227, 1333
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	320, 401, 1199
HpyCH4III	ACNGT	7 cut(s)	113, 248, 383, 538, 843, 859, 1155
HpyCH4IV	ACGT	6 cut(s)	18, 103, 139, 180, 928, 1100
HpyCH4V	TGCA	4 cut(s)	557, 600, 908, 1189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 663, 874
HpyF3I	CTNAG	6 cut(s)	375, 529, 565, 653, 752, 891
HpySE526I	ACGT	6 cut(s)	18, 103, 139, 180, 928, 1100
Hsp92II	CATG	6 cut(s)	202, 604, 805, 901, 952, 1249
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	1 cut(s)	920
LweI	GCATC	3 cut(s)	334, 483, 1273
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	6 cut(s)	18, 103, 139, 180, 928, 1100
MaeIII	GTNAC	6 cut(s)	38, 104, 176, 410, 709, 929
MboII	GAAGA	7 cut(s)	119, 790, 1310, 1313, 1328, 1331, 1334
MflI	RGATCY	5 cut(s)	202, 233, 465, 990, 1035
MhlI	GDGCHC	1 cut(s)	971
MluCI	AATT	2 cut(s)	56, 301
MmeI	TCCRAC	1 cut(s)	1087
Mph1103I	ATGCAT	1 cut(s)	602
MseI	TTAA	1 cut(s)	722
MslI	CAYNNNNRTG	1 cut(s)	1163
MspA1I	CMGCKG	2 cut(s)	911, 1292
MspI	CCGG	4 cut(s)	99, 288, 294, 863
MspR9I	CCNGG	4 cut(s)	213, 732, 863, 1127
Mva1269I	GAATGC	2 cut(s)	592, 602
MvaI	CCWGG	3 cut(s)	213, 732, 1127
MwoI	GCNNNNNNNGC	3 cut(s)	33, 663, 874
NciI	CCSGG	1 cut(s)	863
NlaIII	CATG	6 cut(s)	202, 604, 805, 901, 952, 1249
NlaIV	GGNNCC	4 cut(s)	52, 241, 292, 1037
NmuCI	GTSAC	2 cut(s)	410, 709
NsiI	ATGCAT	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 925
PctI	GAATGC	2 cut(s)	592, 602
PfeI	GAWTC	4 cut(s)	116, 726, 1083, 1337
PflFI	GACNNNGTC	1 cut(s)	536
PflMI	CCANNNNNTGG	2 cut(s)	60, 1079
PfoI	TCCNGGA	2 cut(s)	861, 1125
PkrI	GCNGC	2 cut(s)	29, 910
Psp6I	CCWGG	3 cut(s)	211, 730, 1125
PspEI	GGTNACC	1 cut(s)	38
PspGI	CCWGG	3 cut(s)	211, 730, 1125
PspN4I	GGNNCC	4 cut(s)	52, 241, 292, 1037
PspPI	GGNCC	2 cut(s)	239, 604
PsrI	GAACNNNNNNTAC	2 cut(s)	1004, 1036
PstNI	CAGNNNCTG	1 cut(s)	1062
PsuI	RGATCY	5 cut(s)	202, 233, 465, 990, 1035
PsyI	GACNNNGTC	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	4 cut(s)	217, 551, 845, 1196
RsaNI	GTAC	4 cut(s)	216, 550, 844, 1195
RseI	CAYNNNNRTG	1 cut(s)	1163
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	2 cut(s)	28, 909
Sau96I	GGNCC	2 cut(s)	239, 604
ScrFI	CCNGG	4 cut(s)	213, 732, 863, 1127
SduI	GDGCHC	1 cut(s)	971
SfaNI	GCATC	3 cut(s)	334, 483, 1273
Sfr274I	CTCGAG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	239, 604
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	1163
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	56, 301
SsiI	CCGC	6 cut(s)	27, 36, 120, 640, 693, 1290
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	4 cut(s)	211, 730, 861, 1125
StyI	CCWWGG	1 cut(s)	22
TaaI	ACNGT	7 cut(s)	113, 248, 383, 538, 843, 859, 1155
TaiI	ACGT	6 cut(s)	21, 106, 142, 183, 931, 1103
TaqI	TCGA	6 cut(s)	135, 207, 354, 609, 1115, 1121
TasI	AATT	2 cut(s)	56, 301
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	116, 726, 1083, 1337
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TscAI	CASTG	1 cut(s)	1234
TseFI	GTSAC	2 cut(s)	410, 709
TseI	GCWGC	1 cut(s)	908
Tsp45I	GTSAC	2 cut(s)	410, 709
TspDTI	ATGAA	6 cut(s)	174, 609, 790, 1262, 1311, 1329
TspGWI	ACGGA	3 cut(s)	248, 458, 939
TspRI	CASTG	1 cut(s)	1234
Tth111I	GACNNNGTC	1 cut(s)	536
Van91I	CCANNNNNTGG	2 cut(s)	60, 1079
VpaK11BI	GGWCC	2 cut(s)	239, 604
XapI	RAATTY	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	790
XspI	CTAG	1 cut(s)	663
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.