Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010146

Physical Location & Seq

Genomic Coordinates Forward (+)

6942625 .. 6945091

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20020.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGACTACCATGAATGCTGCTGTTTCTCTCACATCTTCAAACTCTTCTTCTTTTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTTTCCATAAAAGCACAAATCACAACAGAAACAGATACTCCTACTCCTGCAAAGAAAGTAGAGAAAGTGTCAAAGAAGAACGAGGAAGGTGTGATTGTTAACAGGTACAGACCAAAAGAGCCTTACACTGGAAAATGCCTTCTCAACACCAAAATCACAGCTGATGATGCTCCTGGAGAGACCTGGCACATGGTTTTCAGCCATCAAGGAGAAATCCCGTACAGAGAAGGACAATCTGTTGGTGTGATTGCAGATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCCATTGCAAGCAGCGCTCTTGGAGATCTCGGCAATTCTGAAACCGTTTCTTTGTGTGTTAAAAGACTTGTTTATACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGATTTGGCACCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAGAAATGCTTATGCCAAAGGATCCAAACGCCACCGTTATTATGCTTGCCACAGGGACAGGAATTGCTCCTTTCAGGTCTTTCTTATGGAAGATGTTCTTTGAGAAACATGATGACTACAAGTTCAATGGCTTAGCTTGGTTGTTCTTGGGTGTACCAACCACTAGCTCTTTGCTCTACCAAGAGGAGTTTGATAAGATGAAAGCAAAGGCCCCCGAGAACTTCAGGGTGGATTACGCGATAAGCAGAGAACAAGCGAACGATAAAGGAGAGAAAATGTATATCCAGACTCGGATGGCGCAATACGCAGCTGAGTTATGGGAGTTGTTGAAGAAAGACAACACTTTTGTTTACATGTGTGGACTCAAGGGAATGGAGAAAGGAATTGATGACATTATGGTCTCATTGGCTGCAAATGACGGTATTGACTGGTTTGATTACAAGAAGCAGTTGAAGAAGGCAGAGCAATGGAACGTTGAAGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0019904 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045156 GO:0045157 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0097159 GO:0098542 GO:0098796 GO:0098807 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

369

Amino Acids

41.17

Weight (kDa)

8.51

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	222 - 336	2.2e-28	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20020 AT1G20020 AT1G20020 AT5G66190 AT5G66190
fragaria_vesca	FvH4_1g11730
malus_domestica	MD02G1130800.v1.1 MD15G1244500.v1.1
prunus_persica	Prupe.7G169200_v2.0.a1
pyrus_communis	pycom02g10250 pycom15g21530
rosa_chinensis	RchiOBHm_Chr2g0099331
rosa_laevigata	RLG00000016872
rosa_multiflora	Rmu_sc0009774.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143200
rosa_rugosa	Rorug02G0078700
rosa_samantha	Rh2AG128200 Rh2BG131100 Rh2CG132300 Rh2DG132700
rosa_wichuraiana	Rw2G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1019
AccB1I	GGYRCC	1 cut(s)	583
AccI	GTMKAC	1 cut(s)	1104
AccII	CGCG	1 cut(s)	860
AciI	CCGC	1 cut(s)	60
AclI	AACGTT	1 cut(s)	1095
AclWI	GGATC	3 cut(s)	98, 638, 651
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	829
AfaI	GTAC	3 cut(s)	260, 374, 777
AfeI	AGCGCT	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	5 cut(s)	42, 748, 952, 1075, 1100
AjnI	CCWGG	2 cut(s)	325, 335
AluBI	AGCT	5 cut(s)	314, 604, 758, 789, 932
AluI	AGCT	5 cut(s)	314, 604, 758, 789, 932
Alw26I	GTCTC	3 cut(s)	326, 536, 1027
AlwI	GGATC	3 cut(s)	98, 638, 651
Ama87I	CYCGRG	1 cut(s)	836
Aor51HI	AGCGCT	1 cut(s)	466
AoxI	GGCC	1 cut(s)	831
ApeKI	GCWGC	4 cut(s)	20, 462, 929, 1031
ApoI	RAATTY	1 cut(s)	565
ArsI	GACNNNNNNTTYG	2 cut(s)	950, 982
Asp700I	GAANNNNTTC	1 cut(s)	716
AspLEI	GCGC	2 cut(s)	467, 922
AspS9I	GGNCC	2 cut(s)	611, 832
AsuC2I	CCSGG	1 cut(s)	588
AvaI	CYCGRG	1 cut(s)	836
AvaII	GGWCC	1 cut(s)	611
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	583
BbvI	GCAGC	4 cut(s)	7, 474, 941, 1018
BccI	CCATC	3 cut(s)	363, 401, 910
BciT130I	CCWGG	2 cut(s)	327, 337
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	3 cut(s)	326, 536, 1027
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	468
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	4 cut(s)	21, 463, 930, 1032
BlpI	GCTNAGC	1 cut(s)	754
BlsI	GCNGC	4 cut(s)	22, 464, 931, 1033
Bme1390I	CCNGG	3 cut(s)	327, 337, 588
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	611, 832
BmiI	GGNNCC	3 cut(s)	585, 645, 834
BmrFI	CCNGG	3 cut(s)	327, 337, 588
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	754
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	1 cut(s)	588
BsaI	GGTCTC	2 cut(s)	326, 1027
BsaJI	CCNNGG	1 cut(s)	535
BsaXI	ACNNNNNCTCC	6 cut(s)	175, 181, 205, 211, 531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	286, 613, 1055
Bse3DI	GCAATG	3 cut(s)	75, 453, 1094
BseBI	CCWGG	2 cut(s)	327, 337
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	1 cut(s)	921
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	3 cut(s)	75, 453, 1094
BseMII	CTCAG	1 cut(s)	924
BseNI	ACTGG	3 cut(s)	286, 613, 1055
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	4 cut(s)	7, 474, 941, 1018
Bsh1236I	CGCG	1 cut(s)	860
BshFI	GGCC	1 cut(s)	833
BshNI	GGYRCC	1 cut(s)	583
BsiHKCI	CYCGRG	1 cut(s)	836
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	3 cut(s)	326, 536, 1027
BsmFI	GGGAC	1 cut(s)	691
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	833
Bso31I	GGTCTC	2 cut(s)	326, 1027
BsoBI	CYCGRG	1 cut(s)	836
Bsp143I	GATC	3 cut(s)	90, 475, 643
Bsp1720I	GCTNAGC	1 cut(s)	754
BspACI	CCGC	1 cut(s)	60
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	1 cut(s)	925
BspFNI	CGCG	1 cut(s)	860
BspLI	GGNNCC	3 cut(s)	585, 645, 834
BspPI	GGATC	3 cut(s)	98, 638, 651
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	2 cut(s)	326, 1027
BsrDI	GCAATG	3 cut(s)	75, 453, 1094
BsrI	ACTGG	3 cut(s)	286, 613, 1055
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	3 cut(s)	90, 475, 643
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	327, 337
Bst4CI	ACNGT	4 cut(s)	496, 547, 658, 1043
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	460, 669
BstDEI	CTNAG	3 cut(s)	102, 754, 933
BstF5I	GGATG	1 cut(s)	921
BstFNI	CGCG	1 cut(s)	860
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	467, 922
BstKTI	GATC	3 cut(s)	93, 478, 646
BstMAI	GTCTC	3 cut(s)	326, 536, 1027
BstMBI	GATC	3 cut(s)	90, 475, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 464, 926
BstNI	CCWGG	2 cut(s)	327, 337
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	3 cut(s)	325, 335, 586
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	860
BstV1I	GCAGC	4 cut(s)	7, 474, 941, 1018
BstX2I	RGATCY	2 cut(s)	475, 643
BstYI	RGATCY	2 cut(s)	475, 643
BsuRI	GGCC	1 cut(s)	833
BtsCI	GGATG	1 cut(s)	921
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	460, 669
CfoI	GCGC	2 cut(s)	467, 922
Cfr13I	GGNCC	2 cut(s)	611, 832
Csp6I	GTAC	3 cut(s)	259, 373, 776
CviAII	CATG	4 cut(s)	13, 343, 731, 976
CviQI	GTAC	3 cut(s)	259, 373, 776
DdeI	CTNAG	3 cut(s)	102, 754, 933
DpnI	GATC	3 cut(s)	92, 477, 645
DpnII	GATC	3 cut(s)	90, 475, 643
DrdI	GACNNNNNNGTC	1 cut(s)	1019
DseDI	GACNNNNNNGTC	1 cut(s)	1019
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	535
Eco31I	GGTCTC	2 cut(s)	326, 1027
Eco47I	GGWCC	1 cut(s)	611
Eco47III	AGCGCT	1 cut(s)	466
Eco57I	CTGAAG	1 cut(s)	829
Eco88I	CYCGRG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	832
EcoRII	CCWGG	2 cut(s)	325, 335
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	4 cut(s)	16, 346, 734, 979
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 704, 736
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	4 cut(s)	12, 342, 730, 975
FauI	CCCGC	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	1104
Fnu4HI	GCNGC	4 cut(s)	21, 463, 930, 1032
FokI	GGATG	1 cut(s)	928
Fsp4HI	GCNGC	4 cut(s)	21, 463, 930, 1032
FspBI	CTAG	1 cut(s)	786
GlaI	GCGC	2 cut(s)	466, 921
GluI	GCNGC	4 cut(s)	21, 463, 930, 1032
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	2 cut(s)	467, 922
Hin1II	CATG	4 cut(s)	16, 346, 734, 979
Hin6I	GCGC	2 cut(s)	465, 920
HinP1I	GCGC	2 cut(s)	465, 920
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	910, 984
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	588
Hpy166II	GTNNAC	6 cut(s)	99, 253, 776, 973, 983, 1105
Hpy188I	TCNGA	3 cut(s)	443, 490, 915
Hpy188III	TCNNGA	2 cut(s)	83, 907
Hpy8I	GTNNAC	6 cut(s)	99, 253, 776, 973, 983, 1105
HpyAV	CCTTC	4 cut(s)	233, 302, 374, 1072
HpyCH4III	ACNGT	4 cut(s)	496, 547, 658, 1043
HpyCH4IV	ACGT	1 cut(s)	1095
HpyCH4V	TGCA	4 cut(s)	203, 404, 458, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 464, 926
HpyF3I	CTNAG	3 cut(s)	102, 754, 933
HpySE526I	ACGT	1 cut(s)	1095
Hsp92II	CATG	4 cut(s)	16, 346, 734, 979
HspAI	GCGC	2 cut(s)	465, 920
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	90, 475, 643
LmnI	GCTCC	3 cut(s)	85, 328, 694
Lsp1109I	GCAGC	4 cut(s)	7, 474, 941, 1018
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	786
MaeII	ACGT	1 cut(s)	1095
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	3 cut(s)	92, 477, 645
MboI	GATC	3 cut(s)	90, 475, 643
MboII	GAAGA	7 cut(s)	30, 39, 42, 241, 724, 964, 1087
MflI	RGATCY	2 cut(s)	475, 643
MluCI	AATT	5 cut(s)	411, 484, 565, 684, 1005
MlyI	GAGTC	2 cut(s)	904, 978
MnlI	CCTC	3 cut(s)	229, 441, 799
MroXI	GAANNNNTTC	1 cut(s)	716
MseI	TTAA	4 cut(s)	252, 510, 549, 600
MspA1I	CMGCKG	2 cut(s)	314, 932
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	3 cut(s)	327, 337, 588
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	327, 337
MvnI	CGCG	1 cut(s)	860
MwoI	GCNNNNNNNGC	3 cut(s)	320, 464, 926
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	3 cut(s)	90, 475, 643
NlaIII	CATG	4 cut(s)	16, 346, 734, 979
NlaIV	GGNNCC	3 cut(s)	585, 645, 834
NmeAIII	GCCGAG	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	979
PciI	ACATGT	1 cut(s)	975
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	716
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	22, 464, 931, 1033
PleI	GAGTC	2 cut(s)	904, 978
PpsI	GAGTC	2 cut(s)	904, 978
PscI	ACATGT	1 cut(s)	975
Psp1406I	AACGTT	1 cut(s)	1095
Psp6I	CCWGG	2 cut(s)	325, 335
PspGI	CCWGG	2 cut(s)	325, 335
PspN4I	GGNNCC	3 cut(s)	585, 645, 834
PspPI	GGNCC	2 cut(s)	611, 832
PsuI	RGATCY	2 cut(s)	475, 643
PvuII	CAGCTG	2 cut(s)	314, 932
RsaI	GTAC	3 cut(s)	260, 374, 777
RsaNI	GTAC	3 cut(s)	259, 373, 776
SaqAI	TTAA	4 cut(s)	252, 510, 549, 600
SatI	GCNGC	4 cut(s)	21, 463, 930, 1032
Sau3AI	GATC	3 cut(s)	90, 475, 643
Sau96I	GGNCC	2 cut(s)	611, 832
SchI	GAGTC	2 cut(s)	904, 978
ScrFI	CCNGG	3 cut(s)	327, 337, 588
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	986
SmoI	CTYRAG	1 cut(s)	986
Sse9I	AATT	5 cut(s)	411, 484, 565, 684, 1005
SsiI	CCGC	1 cut(s)	60
SspMI	CTAG	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	325, 335, 586
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	4 cut(s)	496, 547, 658, 1043
TaiI	ACGT	1 cut(s)	1098
TasI	AATT	5 cut(s)	411, 484, 565, 684, 1005
Tru1I	TTAA	4 cut(s)	252, 510, 549, 600
Tru9I	TTAA	4 cut(s)	252, 510, 549, 600
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	4 cut(s)	20, 462, 929, 1031
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	29, 836
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	611
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	979
XmiI	GTMKAC	1 cut(s)	1104
XmnI	GAANNNNTTC	1 cut(s)	716
XspI	CTAG	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.