Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009774.1

Orthogroup ID

OG0010146

Physical Location & Seq

Genomic Coordinates Forward (+)

24781 .. 27008

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009774.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atggctgcagctgtaactgctgctgtttcattcccatcctccaagtcctcaactctccccaccagaacgtcccttatctgtcctgaaagaatcaccctcaagaaggtttatagagaagcttctgctggtgggagagtggtttctgtcagagcccaagtcaccaccactgaggctgctccacctgccaaggctgtgaagcattccaagaagcaagaggaaggtgtggttgtgaacaagttcaagcccaagaacccttacgttggcagagtcctcctcaacactaagatcactgctgatgatgcacctggtgagacctggcacatggtcttcagcactgatggagagatgccctacagagaaggacagtctattggagtgattccagatggtattgaccctaagaatggcaagcctcacaagctcaggctgtactcaattgccagtagtgcccttggtgactttggtgactccaaaactgtttctctctgtgtgaaaaggcttgtgtacaccaatgacgcaggcgaaaccgttaaaggggtgtgctcaaactttttgtgtgacttgaagccagggagtgaagtgaccatgacaggaccagttggcaaagaaatgcttatgccaaaagatcctaatgcaaccgtcatcatgcttgcaactggtactggaattgctcctttcagatcattcttgtggaaaatgttctttgagaagcatgaagactacaagtttgaaggtttggcttggctcttcttgggtgttcccaccagtagctcactgctttacaaggaggaatttgagaagatgaacgagaaggcccctgataacttcaggcttgacttcgctgtcagcagagagcaaaccaacgagaagggcgagaaaatgtacattcaaaccagaatggctcagtatgcagaagagctatgggagttactcaagaaggacaacacctacgtctacatgtgcggtctcaagggaatggagaagggaattgatgacatcatggtgtcattggctgccaaagacggcattgactggttagactacaaaaagcagttgaagaaagcagagcaatggaatgtggaagtctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0019904 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0045157 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0097159 GO:0098542 GO:0098796 GO:0098807 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

363

Amino Acids

40.41

Weight (kDa)

8.55

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20020 AT1G20020 AT1G20020 AT5G66190 AT5G66190
fragaria_vesca	FvH4_1g11730
malus_domestica	MD02G1130800.v1.1 MD15G1244500.v1.1
prunus_persica	Prupe.7G169200_v2.0.a1
pyrus_communis	pycom02g10250 pycom15g21530
rosa_chinensis	RchiOBHm_Chr2g0099331
rosa_laevigata	RLG00000016872
rosa_multiflora	Rmu_sc0009774.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143200
rosa_rugosa	Rorug02G0078700
rosa_samantha	Rh2AG128200 Rh2BG131100 Rh2CG132300 Rh2DG132700
rosa_wichuraiana	Rw2G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
AasI	GACNNNNNNGTC	1 cut(s)	842
Acc36I	ACCTGC	1 cut(s)	190
AccI	GTMKAC	2 cut(s)	954, 1086
AciI	CCGC	1 cut(s)	963
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	2 cut(s)	313, 811
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	4 cut(s)	431, 506, 661, 884
AfiI	CCNNNNNNNGG	4 cut(s)	103, 260, 404, 534
AflIII	ACRYGT	1 cut(s)	957
AgsI	TTSAA	5 cut(s)	241, 565, 731, 890, 1057
AjnI	CCWGG	3 cut(s)	304, 314, 568
AluBI	AGCT	5 cut(s)	11, 119, 421, 771, 919
AluI	AGCT	5 cut(s)	11, 119, 421, 771, 919
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	2 cut(s)	305, 971
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	1 cut(s)	813
ApeKI	GCWGC	5 cut(s)	5, 8, 20, 173, 1013
ApoI	RAATTY	1 cut(s)	791
ArsI	GACNNNNNNTTYG	2 cut(s)	710, 742
Asp700I	GAANNNNTTC	2 cut(s)	236, 698
AspS9I	GGNCC	2 cut(s)	593, 814
AsuHPI	GGTGA	5 cut(s)	85, 151, 320, 467, 476
AvaII	GGWCC	1 cut(s)	593
BaeGI	GKGCMC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	319, 723
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	7, 20, 160, 1000
BccI	CCATC	3 cut(s)	43, 332, 380
BceAI	ACGGC	1 cut(s)	1039
BciT130I	CCWGG	3 cut(s)	306, 316, 570
BcoDI	GTCTC	2 cut(s)	305, 971
BfmI	CTRYAG	2 cut(s)	6, 352
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	5 cut(s)	6, 9, 21, 174, 1014
BlsI	GCNGC	5 cut(s)	7, 10, 22, 175, 1015
Bme1390I	CCNGG	3 cut(s)	306, 316, 570
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	593, 814
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	306, 316, 570
BmsI	GCATC	2 cut(s)	289, 336
BpiI	GAAGAC	2 cut(s)	319, 723
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
Bpu10I	CCTNAGC	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	83, 917, 953
BsaI	GGTCTC	2 cut(s)	305, 971
BsaJI	CCNNGG	3 cut(s)	186, 451, 569
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 260, 404, 534
Bse1I	ACTGG	6 cut(s)	441, 596, 661, 667, 765, 1037
Bse3DI	GCAATG	1 cut(s)	1076
BseBI	CCWGG	3 cut(s)	306, 316, 570
BseDI	CCNNGG	3 cut(s)	186, 451, 569
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	4 cut(s)	103, 260, 404, 534
BseMI	GCAATG	1 cut(s)	1076
BseMII	CTCAG	3 cut(s)	159, 436, 917
BseNI	ACTGG	6 cut(s)	441, 596, 661, 667, 765, 1037
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	7, 20, 160, 1000
BshFI	GGCC	1 cut(s)	815
BsiHKAI	GWGCWC	1 cut(s)	545
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	103, 260, 404, 534
BsmAI	GTCTC	2 cut(s)	305, 971
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	815
Bso31I	GGTCTC	2 cut(s)	305, 971
Bsp1286I	GDGCHC	3 cut(s)	154, 451, 545
Bsp1407I	TGTACA	2 cut(s)	504, 882
Bsp143I	GATC	3 cut(s)	285, 625, 680
BspACI	CCGC	1 cut(s)	963
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	3 cut(s)	160, 435, 916
BspLI	GGNNCC	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	620
BspQI	GCTCTTC	2 cut(s)	752, 909
BspTNI	GGTCTC	2 cut(s)	305, 971
BsrDI	GCAATG	1 cut(s)	1076
BsrGI	TGTACA	2 cut(s)	504, 882
BsrI	ACTGG	6 cut(s)	441, 596, 661, 667, 765, 1037
BssECI	CCNNGG	3 cut(s)	186, 451, 569
BssMI	GATC	3 cut(s)	285, 625, 680
BssT1I	CCWWGG	2 cut(s)	186, 451
Bst2UI	CCWGG	3 cut(s)	306, 316, 570
Bst4CI	ACNGT	4 cut(s)	366, 478, 529, 640
Bst6I	CTCTTC	2 cut(s)	752, 909
BstAUI	TGTACA	2 cut(s)	504, 882
BstC8I	GCNNGC	3 cut(s)	410, 520, 651
BstDEI	CTNAG	5 cut(s)	168, 282, 399, 422, 903
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	3 cut(s)	288, 628, 683
BstMAI	GTCTC	2 cut(s)	305, 971
BstMBI	GATC	3 cut(s)	285, 625, 680
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 182, 299, 418, 446, 908
BstNI	CCWGG	3 cut(s)	306, 316, 570
BstNSI	RCATGY	1 cut(s)	961
BstSCI	CCNGG	3 cut(s)	304, 314, 568
BstSFI	CTRYAG	2 cut(s)	6, 352
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	7, 20, 160, 1000
BstV2I	GAAGAC	2 cut(s)	319, 723
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	1 cut(s)	815
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	2 cut(s)	288, 773
BtsIMutI	CAGTG	4 cut(s)	165, 288, 333, 773
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	3 cut(s)	410, 520, 651
Cfr13I	GGNCC	2 cut(s)	593, 814
CseI	GACGC	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	430, 505, 660, 883
CviAII	CATG	6 cut(s)	322, 586, 646, 713, 958, 1000
CviQI	GTAC	4 cut(s)	430, 505, 660, 883
DdeI	CTNAG	5 cut(s)	168, 282, 399, 422, 903
DpnI	GATC	3 cut(s)	287, 627, 682
DpnII	GATC	3 cut(s)	285, 625, 680
DraIII	CACNNNGTG	1 cut(s)	308
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	752, 909
EarI	CTCTTC	2 cut(s)	752, 909
Eco130I	CCWWGG	2 cut(s)	186, 451
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	2 cut(s)	305, 971
Eco47I	GGWCC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	313, 811
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRII	CCWGG	3 cut(s)	304, 314, 568
EcoT14I	CCWWGG	2 cut(s)	186, 451
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	186, 451
FaeI	CATG	6 cut(s)	325, 589, 649, 716, 961, 1003
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	6 cut(s)	321, 585, 645, 712, 957, 999
FblI	GTMKAC	2 cut(s)	954, 1086
Fnu4HI	GCNGC	5 cut(s)	6, 9, 21, 174, 1014
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	5 cut(s)	6, 9, 21, 174, 1014
GluI	GCNGC	5 cut(s)	6, 9, 21, 174, 1014
HaeIII	GGCC	1 cut(s)	815
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	6 cut(s)	325, 589, 649, 716, 961, 1003
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	4 cut(s)	90, 267, 379, 467
HphI	GGTGA	5 cut(s)	85, 151, 320, 467, 476
Hpy166II	GTNNAC	5 cut(s)	232, 505, 507, 955, 1087
Hpy188I	TCNGA	2 cut(s)	149, 680
Hpy188III	TCNNGA	4 cut(s)	83, 100, 383, 934
Hpy8I	GTNNAC	5 cut(s)	232, 505, 507, 955, 1087
HpyAV	CCTTC	8 cut(s)	97, 212, 353, 725, 805, 862, 931, 976
HpyCH4III	ACNGT	4 cut(s)	366, 478, 529, 640
HpyCH4IV	ACGT	3 cut(s)	68, 258, 951
HpyCH4V	TGCA	5 cut(s)	8, 302, 635, 653, 911
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 182, 299, 418, 446, 908
HpyF3I	CTNAG	5 cut(s)	168, 282, 399, 422, 903
HpySE526I	ACGT	3 cut(s)	68, 258, 951
Hsp92II	CATG	6 cut(s)	325, 589, 649, 716, 961, 1003
Kzo9I	GATC	3 cut(s)	285, 625, 680
LguI	GCTCTTC	2 cut(s)	752, 909
LmnI	GCTCC	2 cut(s)	181, 676
Lsp1109I	GCAGC	4 cut(s)	7, 20, 160, 1000
LweI	GCATC	2 cut(s)	289, 336
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	3 cut(s)	68, 258, 951
MaeIII	GTNAC	7 cut(s)	13, 157, 455, 464, 557, 580, 927
MalI	GATC	3 cut(s)	287, 627, 682
MboI	GATC	3 cut(s)	285, 625, 680
MboII	GAAGA	6 cut(s)	319, 728, 739, 811, 926, 1069
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	3 cut(s)	154, 451, 545
MluCI	AATT	4 cut(s)	435, 666, 791, 987
MlyI	GAGTC	2 cut(s)	276, 461
MnlI	CCTC	9 cut(s)	49, 58, 107, 163, 208, 281, 284, 423, 781
MroXI	GAANNNNTTC	2 cut(s)	236, 698
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	688, 1001
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	306, 316, 570
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	306, 316, 570
MwoI	GCNNNNNNNGC	6 cut(s)	17, 182, 299, 418, 446, 908
NdeII	GATC	3 cut(s)	285, 625, 680
NlaIII	CATG	6 cut(s)	325, 589, 649, 716, 961, 1003
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	5 cut(s)	157, 455, 464, 557, 580
NspI	RCATGY	1 cut(s)	961
PaqCI	CACCTGC	1 cut(s)	190
PciI	ACATGT	1 cut(s)	957
PciSI	GCTCTTC	2 cut(s)	752, 909
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	2 cut(s)	236, 698
PfeI	GAWTC	2 cut(s)	90, 379
PkrI	GCNGC	5 cut(s)	7, 10, 22, 175, 1015
PleI	GAGTC	2 cut(s)	275, 461
PpsI	GAGTC	2 cut(s)	275, 461
PscI	ACATGT	1 cut(s)	957
Psp6I	CCWGG	3 cut(s)	304, 314, 568
PspGI	CCWGG	3 cut(s)	304, 314, 568
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	2 cut(s)	593, 814
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	4 cut(s)	431, 506, 661, 884
RsaNI	GTAC	4 cut(s)	430, 505, 660, 883
RseI	CAYNNNNRTG	2 cut(s)	688, 1001
SapI	GCTCTTC	2 cut(s)	752, 909
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	5 cut(s)	6, 9, 21, 174, 1014
Sau3AI	GATC	3 cut(s)	285, 625, 680
Sau96I	GGNCC	2 cut(s)	593, 814
SchI	GAGTC	2 cut(s)	276, 461
ScrFI	CCNGG	3 cut(s)	306, 316, 570
SduI	GDGCHC	3 cut(s)	154, 451, 545
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	289, 336
SfcI	CTRYAG	2 cut(s)	6, 352
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	2 cut(s)	688, 1001
SmlI	CTYRAG	3 cut(s)	98, 932, 968
SmoI	CTYRAG	3 cut(s)	98, 932, 968
Sse9I	AATT	4 cut(s)	435, 666, 791, 987
SsiI	CCGC	1 cut(s)	963
StyD4I	CCNGG	3 cut(s)	304, 314, 568
StyI	CCWWGG	2 cut(s)	186, 451
TaaI	ACNGT	4 cut(s)	366, 478, 529, 640
TaiI	ACGT	3 cut(s)	71, 261, 954
TasI	AATT	4 cut(s)	435, 666, 791, 987
TatI	WGTACW	3 cut(s)	429, 504, 882
TfiI	GAWTC	2 cut(s)	90, 379
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	4 cut(s)	172, 295, 340, 780
TseFI	GTSAC	5 cut(s)	157, 455, 464, 557, 580
TseI	GCWGC	5 cut(s)	5, 8, 20, 173, 1013
Tsp45I	GTSAC	5 cut(s)	157, 455, 464, 557, 580
TspDTI	ATGAA	3 cut(s)	18, 729, 818
TspRI	CASTG	4 cut(s)	172, 295, 340, 780
VpaK11BI	GGWCC	1 cut(s)	593
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	1 cut(s)	961
XmiI	GTMKAC	2 cut(s)	954, 1086
XmnI	GAANNNNTTC	2 cut(s)	236, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.