MD02G1130800.v1.1

Ferredoxin-NADP reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
10527497 .. 10530536
3040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1130800.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGCTGCAGCTGTAACTGCTGCTGTCTCCTTCCCCTCCTCCAAGTCCTCCTCCCTCCCCACCAGGACCTCCTTAATCTCACCTGACAGAATCACCCTCAAGAAGGTTCCTTTGTACAACAGCAATGCTGGTGGGAGAGTGGTATCCATCAGAGCCCAGGTGACCACCACCGAGACTGCGCCACCTGCCAAGGTTGTGAAGGAATCCAAGAAGCAAGATGAAGGGGTGGTTGTCAACAAGTACAAGCCCAAGAATCCGTACATTGCCAGAGTCCTCCTCAACACTAGGATCACTGGTGATGATGCGCCTGGTGAGACCTGGCACATGGTCTTCAGCACAGAGGGAGAGGTGCCCTACAGAGAAGGGCAGTCCATTGGAGTTATTCCAGAAGGTGTTGACAAAAATGGGAAGCCTCACAAGCTGAGGTTGTACTCAATTGCCAGCAGCGCCCTCGGTGACTTTGGAGACTCCAAGACTGTTTCTCTGTGTGTGAAACGTCTTGTGTACACCAATGACGCAGGCGAAATTGTTAAAGGAGTGTGTTCAAACTTTTTGTGTGACTTGAAGCCCGCAAGTGAAGTGACGATCACCGGACCAGTTGGAAAAGAAATGCTTATGCCAAAAGACCCTAATGCAACCGTCATCATGCTTGCAACTGGAACTGGAATTGCTCCTTTTAGAGCATTCTTATGGAAAATGTTCTTCGAGAAGCATGAAGACTACAAGTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTTCCTACAAGTAGCTCACTGCTCTACAAGGAGGAATTTGAGAAGATGAAGGAGAAGGCCCCCGAAAACTTCAGGCTTGACTTCGCCGTCAGCAGAGAGCAAACCAACGAGAAGGGTGAGAAGATGTACATCCAAACCAGAATGGCTCAGTATGCAGAAGAGCTATGGGAGTTGCTCAAGAAGGACAACACCTACGTCTACATGTGTGGTCTCAAGGGAATGGAGAAGGGTATCGATGACATCATGGTCTCGTTGGCTGCCAAAGACGGCATTGACTGGATGGACTACAAGAAGCAGTTGAAGAAATCAGAGCAATGGAATGTGGAAGTCTACTAA

Protein Analysis

364

Amino Acids

40.48

Weight (kDa)

8.73

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 216 - 330 8.8e-27 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010146)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
AasI GACNNNNNNGTC 2 cut(s) 842, 1001
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 2 cut(s) 954, 1086
AciI CCGC 1 cut(s) 570
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 791
AcuI CTGAAG 2 cut(s) 316, 811
AfaI GTAC 6 cut(s) 116, 242, 260, 431, 506, 884
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 957
AgsI TTSAA 4 cut(s) 546, 565, 730, 1057
AjnI CCWGG 4 cut(s) 62, 156, 307, 317
AluBI AGCT 4 cut(s) 11, 421, 771, 919
AluI AGCT 4 cut(s) 11, 421, 771, 919
Alw26I GTCTC 6 cut(s) 31, 167, 308, 459, 971, 1009
AlwI GGATC 1 cut(s) 296
AoxI GGCC 1 cut(s) 813
ApeKI GCWGC 5 cut(s) 5, 8, 20, 444, 1013
ApoI RAATTY 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 698
AspLEI GCGC 3 cut(s) 181, 307, 449
AspS9I GGNCC 3 cut(s) 66, 593, 814
AsuHPI GGTGA 8 cut(s) 72, 85, 172, 308, 323, 467, 580, 884
AvaII GGWCC 2 cut(s) 66, 593
BaeGI GKGCMC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 322, 723
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 4 cut(s) 7, 20, 456, 1000
BccI CCATC 2 cut(s) 155, 1030
BceAI ACGGC 2 cut(s) 827, 1039
BcgI CGANNNNNNTGC 2 cut(s) 433, 467
BciT130I CCWGG 4 cut(s) 64, 158, 309, 319
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 6 cut(s) 31, 167, 308, 459, 971, 1009
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 2 cut(s) 6, 355
BfoI RGCGCY 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 193
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 5 cut(s) 6, 9, 21, 445, 1014
BlsI GCNGC 5 cut(s) 7, 10, 22, 446, 1015
Bme1390I CCNGG 4 cut(s) 64, 158, 309, 319
Bme18I GGWCC 2 cut(s) 66, 593
BmgT120I GGNCC 3 cut(s) 66, 593, 814
BmiI GGNNCC 3 cut(s) 108, 351, 816
BmrFI CCNGG 4 cut(s) 64, 158, 309, 319
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 2 cut(s) 322, 723
BplI GAGNNNNNCTC 2 cut(s) 261, 293
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 3 cut(s) 83, 917, 953
Bsa29I ATCGAT 1 cut(s) 990
BsaBI GATNNNNATC 1 cut(s) 884
BsaI GGTCTC 3 cut(s) 308, 971, 1009
BsaJI CCNNGG 3 cut(s) 156, 189, 451
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 5 cut(s) 298, 596, 661, 667, 1037
Bse3DI GCAATG 3 cut(s) 130, 261, 1076
Bse8I GATNNNNATC 1 cut(s) 884
BseBI CCWGG 4 cut(s) 64, 158, 309, 319
BseCI ATCGAT 1 cut(s) 990
BseDI CCNNGG 3 cut(s) 156, 189, 451
BseGI GGATG 2 cut(s) 885, 1041
BseJI GATNNNNATC 1 cut(s) 884
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 3 cut(s) 130, 261, 1076
BseMII CTCAG 2 cut(s) 413, 917
BseNI ACTGG 5 cut(s) 298, 596, 661, 667, 1037
BseRI GAGGAG 3 cut(s) 28, 40, 266
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 4 cut(s) 7, 20, 456, 1000
BshFI GGCC 1 cut(s) 815
BshNI GGYRCC 1 cut(s) 349
BshVI ATCGAT 1 cut(s) 990
BsiSI CCGG 1 cut(s) 591
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 6 cut(s) 31, 167, 308, 459, 971, 1009
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 1 cut(s) 815
Bso31I GGTCTC 3 cut(s) 308, 971, 1009
Bsp1286I GDGCHC 2 cut(s) 157, 354
Bsp1407I TGTACA 3 cut(s) 114, 504, 882
Bsp143I GATC 2 cut(s) 288, 585
BspACI CCGC 1 cut(s) 570
BspANI GGCC 1 cut(s) 815
BspCNI CTCAG 2 cut(s) 414, 916
BspDI ATCGAT 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 108, 351, 816
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 2 cut(s) 752, 909
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 3 cut(s) 308, 971, 1009
BsrDI GCAATG 3 cut(s) 130, 261, 1076
BsrGI TGTACA 3 cut(s) 114, 504, 882
BsrI ACTGG 5 cut(s) 298, 596, 661, 667, 1037
BssECI CCNNGG 3 cut(s) 156, 189, 451
BssMI GATC 2 cut(s) 288, 585
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 4 cut(s) 64, 158, 309, 319
Bst4CI ACNGT 2 cut(s) 478, 640
Bst6I CTCTTC 2 cut(s) 752, 909
BstAUI TGTACA 3 cut(s) 114, 504, 882
BstC8I GCNNGC 4 cut(s) 442, 520, 570, 651
BstDEI CTNAG 2 cut(s) 422, 903
BstEII GGTNACC 1 cut(s) 160
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 885, 1041
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 3 cut(s) 181, 307, 449
BstKTI GATC 2 cut(s) 291, 588
BstMAI GTCTC 6 cut(s) 31, 167, 308, 459, 971, 1009
BstMBI GATC 2 cut(s) 288, 585
BstMWI GCNNNNNNNGC 5 cut(s) 17, 185, 418, 446, 908
BstNI CCWGG 4 cut(s) 64, 158, 309, 319
BstNSI RCATGY 1 cut(s) 961
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 4 cut(s) 62, 156, 307, 317
BstSFI CTRYAG 2 cut(s) 6, 355
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 4 cut(s) 7, 20, 456, 1000
BstV2I GAAGAC 2 cut(s) 322, 723
Bsu15I ATCGAT 1 cut(s) 990
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 815
BsuTUI ATCGAT 1 cut(s) 990
BtsCI GGATG 2 cut(s) 885, 1041
BtsI GCAGTG 1 cut(s) 773
BtsIMutI CAGTG 2 cut(s) 291, 773
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 4 cut(s) 442, 520, 570, 651
CfoI GCGC 3 cut(s) 181, 307, 449
Cfr13I GGNCC 3 cut(s) 66, 593, 814
ClaI ATCGAT 1 cut(s) 990
CseI GACGC 1 cut(s) 524
Csp6I GTAC 6 cut(s) 115, 241, 259, 430, 505, 883
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 6 cut(s) 325, 646, 713, 741, 958, 1000
CviQI GTAC 6 cut(s) 115, 241, 259, 430, 505, 883
DdeI CTNAG 2 cut(s) 422, 903
DpnI GATC 2 cut(s) 290, 587
DpnII GATC 2 cut(s) 288, 585
DrdI GACNNNNNNGTC 2 cut(s) 842, 1001
DseDI GACNNNNNNGTC 2 cut(s) 842, 1001
Eam1104I CTCTTC 2 cut(s) 752, 909
EarI CTCTTC 2 cut(s) 752, 909
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 3 cut(s) 308, 971, 1009
Eco47I GGWCC 2 cut(s) 66, 593
Eco57I CTGAAG 2 cut(s) 316, 811
Eco91I GGTNACC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO109I RGGNCCY 2 cut(s) 66, 814
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 4 cut(s) 62, 156, 307, 317
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 6 cut(s) 324, 645, 712, 740, 957, 999
FauI CCCGC 1 cut(s) 577
FblI GTMKAC 2 cut(s) 954, 1086
Fnu4HI GCNGC 5 cut(s) 6, 9, 21, 445, 1014
FokI GGATG 2 cut(s) 872, 1048
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 5 cut(s) 6, 9, 21, 445, 1014
FspBI CTAG 1 cut(s) 285
GlaI GCGC 3 cut(s) 180, 306, 448
GluI GCNGC 5 cut(s) 6, 9, 21, 445, 1014
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 1 cut(s) 815
HapII CCGG 1 cut(s) 591
HgaI GACGC 1 cut(s) 524
HhaI GCGC 3 cut(s) 181, 307, 449
Hin1II CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
Hin6I GCGC 3 cut(s) 179, 305, 447
HinP1I GCGC 3 cut(s) 179, 305, 447
HincII GTYRAC 2 cut(s) 235, 397
HindII GTYRAC 2 cut(s) 235, 397
HinfI GANTC 5 cut(s) 90, 203, 253, 270, 467
HpaII CCGG 1 cut(s) 591
HphI GGTGA 8 cut(s) 72, 85, 172, 308, 323, 467, 580, 884
Hpy166II GTNNAC 6 cut(s) 235, 397, 505, 507, 955, 1087
Hpy188I TCNGA 2 cut(s) 152, 1066
Hpy188III TCNNGA 4 cut(s) 100, 386, 706, 934
Hpy8I GTNNAC 6 cut(s) 235, 397, 505, 507, 955, 1087
HpyCH4III ACNGT 2 cut(s) 478, 640
HpyCH4IV ACGT 2 cut(s) 496, 951
HpyCH4V TGCA 4 cut(s) 8, 635, 653, 911
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 185, 418, 446, 908
HpyF3I CTNAG 2 cut(s) 422, 903
HpySE526I ACGT 2 cut(s) 496, 951
Hsp92II CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
HspAI GCGC 3 cut(s) 179, 305, 447
Kzo9I GATC 2 cut(s) 288, 585
LguI GCTCTTC 2 cut(s) 752, 909
LmnI GCTCC 1 cut(s) 676
Lsp1109I GCAGC 4 cut(s) 7, 20, 456, 1000
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 285
MaeII ACGT 2 cut(s) 496, 951
MaeIII GTNAC 5 cut(s) 13, 160, 455, 557, 580
MalI GATC 2 cut(s) 290, 587
MboI GATC 2 cut(s) 288, 585
MboII GAAGA 8 cut(s) 322, 694, 728, 739, 811, 889, 926, 1069
MfeI CAATTG 1 cut(s) 435
MhlI GDGCHC 2 cut(s) 157, 354
MluCI AATT 4 cut(s) 435, 525, 666, 791
MlyI GAGTC 2 cut(s) 279, 461
MmeI TCCRAC 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 2 cut(s) 74, 531
MslI CAYNNNNRTG 1 cut(s) 688
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 4 cut(s) 64, 158, 309, 319
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 4 cut(s) 64, 158, 309, 319
MwoI GCNNNNNNNGC 5 cut(s) 17, 185, 418, 446, 908
NdeII GATC 2 cut(s) 288, 585
NlaIII CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
NlaIV GGNNCC 3 cut(s) 108, 351, 816
NmuCI GTSAC 4 cut(s) 160, 455, 557, 580
NspI RCATGY 1 cut(s) 961
PaqCI CACCTGC 1 cut(s) 193
PciI ACATGT 1 cut(s) 957
PciSI GCTCTTC 2 cut(s) 752, 909
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 3 cut(s) 90, 203, 253
PkrI GCNGC 5 cut(s) 7, 10, 22, 446, 1015
PleI GAGTC 2 cut(s) 278, 461
PpsI GAGTC 2 cut(s) 278, 461
PpuMI RGGWCCY 1 cut(s) 66
PscI ACATGT 1 cut(s) 957
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 4 cut(s) 62, 156, 307, 317
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 4 cut(s) 62, 156, 307, 317
PspN4I GGNNCC 3 cut(s) 108, 351, 816
PspPI GGNCC 3 cut(s) 66, 593, 814
PspPPI RGGWCCY 1 cut(s) 66
PstI CTGCAG 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 6 cut(s) 116, 242, 260, 431, 506, 884
RsaNI GTAC 6 cut(s) 115, 241, 259, 430, 505, 883
RseI CAYNNNNRTG 1 cut(s) 688
SapI GCTCTTC 2 cut(s) 752, 909
SaqAI TTAA 2 cut(s) 74, 531
SatI GCNGC 5 cut(s) 6, 9, 21, 445, 1014
Sau3AI GATC 2 cut(s) 288, 585
Sau96I GGNCC 3 cut(s) 66, 593, 814
SchI GAGTC 2 cut(s) 279, 461
ScrFI CCNGG 4 cut(s) 64, 158, 309, 319
SduI GDGCHC 2 cut(s) 157, 354
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 6, 355
SinI GGWCC 2 cut(s) 66, 593
SmiMI CAYNNNNRTG 1 cut(s) 688
SmlI CTYRAG 3 cut(s) 98, 932, 968
SmoI CTYRAG 3 cut(s) 98, 932, 968
Sse9I AATT 4 cut(s) 435, 525, 666, 791
SsiI CCGC 1 cut(s) 570
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 4 cut(s) 62, 156, 307, 317
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 478, 640
TaiI ACGT 2 cut(s) 499, 954
TaqI TCGA 2 cut(s) 705, 990
TasI AATT 4 cut(s) 435, 525, 666, 791
TatI WGTACW 5 cut(s) 114, 240, 429, 504, 882
TfiI GAWTC 3 cut(s) 90, 203, 253
Tru1I TTAA 2 cut(s) 74, 531
Tru9I TTAA 2 cut(s) 74, 531
TscAI CASTG 2 cut(s) 298, 780
TseFI GTSAC 4 cut(s) 160, 455, 557, 580
TseI GCWGC 5 cut(s) 5, 8, 20, 444, 1013
Tsp45I GTSAC 4 cut(s) 160, 455, 557, 580
TspDTI ATGAA 3 cut(s) 234, 729, 818
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 298, 780
VpaK11BI GGWCC 2 cut(s) 66, 593
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 1 cut(s) 791
XceI RCATGY 1 cut(s) 961
XmiI GTMKAC 2 cut(s) 954, 1086
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.