Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010146

Physical Location & Seq

Genomic Coordinates Reverse (-)

11762743 .. 11764939

Gene Structure 2197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG132300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTGCAGCTGTAACTGCTGCTGTTTCATTCCCATCCTCCAAGTCCTCAACTCTCCCCACCAGAACCTCCCTTATCTGTCCTGAAAGAATCACCCTCAAGAAGGTTTATAGAGAAGCTTCTGCTGGTGGGAGAGTGGTTTCTGTCAGAGCCCAAGTCACCACCACTGAGGCTGCTCCACCTGCCAAGGCTGTGAAGCATTCCAAGAAGCAAGAGGAAGGTGTGGTTGTGAACAAGTTCAAGCCCAAGAACCCTTACGTTGGCAGAGTCCTCCTCAACACTAAGATCACTGCTGATGATGCACCTGGTGAGACCTGGCACATGGTCTTCAGCACTGATGGAGAGATGCCCTACAGAGAAGGACAGTCTATTGGAGTGATTCCAGATGGTATTGACCCTAAGAATGGCAAGCCTCACAAGCTCAGGTTGTACTCAATTGCCAGTAGTGCCCTTGGTGACTTTGGTGACTCCAAAACTCTTGCAACTGGTACTGGAATTGCTCCTTTCAGATCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACAAGTTTGAAGGTTTGGCTTGGCTCTTCTTGGGTGTTCCCACCAGTAGCTCACTGCTTTACAAGGAGGAATTTGAGAAGATGAAAGAGAAGGCCCCCGATAACTTCAGGCTTGACTTCGCTGTCAGCAGAGAGCAAACCAACGAGAAGGGCGAGAAAATGTACATTCAAACCAGAATGGCTCAGTATGCAGAAGAGCTATGGGAGTTACTCAAGAAGGACAACACCTACGTCTACATGTGCGGTCTCAAGGGAATGGAGAAGGGAATTGATGACATCATGGTGTCATTGGCTGCCAAAGACGGCATTGACTGGTTAGACTACAAAAAGCAGTTGAAGAAAGCAGAGCAATGGAATGTGGAAGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0019904 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0045157 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0097159 GO:0098542 GO:0098796 GO:0098807 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

306

Amino Acids

34.35

Weight (kDa)

8.88

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	160 - 273	1.1e-26	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20020 AT1G20020 AT1G20020 AT5G66190 AT5G66190
fragaria_vesca	FvH4_1g11730
malus_domestica	MD02G1130800.v1.1 MD15G1244500.v1.1
prunus_persica	Prupe.7G169200_v2.0.a1
pyrus_communis	pycom02g10250 pycom15g21530
rosa_chinensis	RchiOBHm_Chr2g0099331
rosa_laevigata	RLG00000016872
rosa_multiflora	Rmu_sc0009774.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143200
rosa_rugosa	Rorug02G0078700
rosa_samantha	Rh2AG128200 Rh2BG131100 Rh2CG132300 Rh2DG132700
rosa_wichuraiana	Rw2G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
AasI	GACNNNNNNGTC	1 cut(s)	671
Acc36I	ACCTGC	1 cut(s)	190
AccI	GTMKAC	2 cut(s)	783, 915
AciI	CCGC	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	313, 640
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	431, 490, 713
AfiI	CCNNNNNNNGG	3 cut(s)	103, 260, 404
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	4 cut(s)	241, 560, 719, 886
AjnI	CCWGG	2 cut(s)	304, 314
AluBI	AGCT	5 cut(s)	11, 119, 421, 600, 748
AluI	AGCT	5 cut(s)	11, 119, 421, 600, 748
Alw26I	GTCTC	2 cut(s)	305, 800
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	5 cut(s)	5, 8, 20, 173, 842
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
Asp700I	GAANNNNTTC	2 cut(s)	236, 527
AspS9I	GGNCC	1 cut(s)	643
AsuHPI	GGTGA	5 cut(s)	85, 151, 320, 467, 476
BaeGI	GKGCMC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	319, 552
BbvI	GCAGC	4 cut(s)	7, 20, 160, 829
BccI	CCATC	3 cut(s)	43, 332, 380
BceAI	ACGGC	1 cut(s)	868
BciT130I	CCWGG	2 cut(s)	306, 316
BcoDI	GTCTC	2 cut(s)	305, 800
BfmI	CTRYAG	2 cut(s)	6, 352
BfuAI	ACCTGC	1 cut(s)	190
BisI	GCNGC	5 cut(s)	6, 9, 21, 174, 843
BlsI	GCNGC	5 cut(s)	7, 10, 22, 175, 844
Bme1390I	CCNGG	2 cut(s)	306, 316
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	1 cut(s)	645
BmrFI	CCNGG	2 cut(s)	306, 316
BmsI	GCATC	2 cut(s)	289, 336
BpiI	GAAGAC	2 cut(s)	319, 552
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
Bpu10I	CCTNAGC	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	83, 746, 782
BsaI	GGTCTC	2 cut(s)	305, 800
BsaJI	CCNNGG	2 cut(s)	186, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 260, 404
Bse1I	ACTGG	5 cut(s)	441, 490, 496, 594, 866
Bse3DI	GCAATG	1 cut(s)	905
BseBI	CCWGG	2 cut(s)	306, 316
BseDI	CCNNGG	2 cut(s)	186, 451
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	103, 260, 404
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	3 cut(s)	159, 436, 746
BseNI	ACTGG	5 cut(s)	441, 490, 496, 594, 866
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	7, 20, 160, 829
BshFI	GGCC	1 cut(s)	644
BslI	CCNNNNNNNGG	3 cut(s)	103, 260, 404
BsmAI	GTCTC	2 cut(s)	305, 800
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	644
Bso31I	GGTCTC	2 cut(s)	305, 800
Bsp1286I	GDGCHC	2 cut(s)	154, 451
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	285, 509
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	3 cut(s)	160, 435, 745
BspLI	GGNNCC	1 cut(s)	645
BspMAI	CTGCAG	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	190
BspQI	GCTCTTC	2 cut(s)	581, 738
BspTNI	GGTCTC	2 cut(s)	305, 800
BsrDI	GCAATG	1 cut(s)	905
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	5 cut(s)	441, 490, 496, 594, 866
BssECI	CCNNGG	2 cut(s)	186, 451
BssMI	GATC	2 cut(s)	285, 509
BssT1I	CCWWGG	2 cut(s)	186, 451
Bst2UI	CCWGG	2 cut(s)	306, 316
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	2 cut(s)	581, 738
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	5 cut(s)	168, 282, 399, 422, 732
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	35
BstKTI	GATC	2 cut(s)	288, 512
BstMAI	GTCTC	2 cut(s)	305, 800
BstMBI	GATC	2 cut(s)	285, 509
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 182, 299, 418, 446, 737
BstNI	CCWGG	2 cut(s)	306, 316
BstNSI	RCATGY	1 cut(s)	790
BstSCI	CCNGG	2 cut(s)	304, 314
BstSFI	CTRYAG	2 cut(s)	6, 352
BstSLI	GKGCMC	1 cut(s)	451
BstV1I	GCAGC	4 cut(s)	7, 20, 160, 829
BstV2I	GAAGAC	2 cut(s)	319, 552
BsuRI	GGCC	1 cut(s)	644
BtsCI	GGATG	1 cut(s)	35
BtsI	GCAGTG	2 cut(s)	288, 602
BtsIMutI	CAGTG	4 cut(s)	165, 288, 333, 602
BveI	ACCTGC	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	643
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	430, 489, 712
CviAII	CATG	4 cut(s)	322, 542, 787, 829
CviQI	GTAC	3 cut(s)	430, 489, 712
DdeI	CTNAG	5 cut(s)	168, 282, 399, 422, 732
DpnI	GATC	2 cut(s)	287, 511
DpnII	GATC	2 cut(s)	285, 509
DraIII	CACNNNGTG	1 cut(s)	308
DrdI	GACNNNNNNGTC	1 cut(s)	671
DseDI	GACNNNNNNGTC	1 cut(s)	671
Eam1104I	CTCTTC	2 cut(s)	581, 738
EarI	CTCTTC	2 cut(s)	581, 738
Eco130I	CCWWGG	2 cut(s)	186, 451
Eco24I	GRGCYC	1 cut(s)	154
Eco31I	GGTCTC	2 cut(s)	305, 800
Eco57I	CTGAAG	2 cut(s)	313, 640
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	2 cut(s)	304, 314
EcoT14I	CCWWGG	2 cut(s)	186, 451
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	186, 451
FaeI	CATG	4 cut(s)	325, 545, 790, 832
FaiI	YATR	7 cut(s)	111, 323, 543, 738, 751, 788, 830
FatI	CATG	4 cut(s)	321, 541, 786, 828
FblI	GTMKAC	2 cut(s)	783, 915
Fnu4HI	GCNGC	5 cut(s)	6, 9, 21, 174, 843
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	5 cut(s)	6, 9, 21, 174, 843
GluI	GCNGC	5 cut(s)	6, 9, 21, 174, 843
HaeIII	GGCC	1 cut(s)	644
Hin1II	CATG	4 cut(s)	325, 545, 790, 832
HindIII	AAGCTT	1 cut(s)	117
HinfI	GANTC	4 cut(s)	90, 267, 379, 467
HphI	GGTGA	5 cut(s)	85, 151, 320, 467, 476
Hpy166II	GTNNAC	3 cut(s)	232, 784, 916
Hpy188I	TCNGA	2 cut(s)	149, 509
Hpy188III	TCNNGA	4 cut(s)	83, 100, 383, 763
Hpy8I	GTNNAC	3 cut(s)	232, 784, 916
HpyAV	CCTTC	8 cut(s)	97, 212, 353, 554, 634, 691, 760, 805
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	2 cut(s)	258, 780
HpyCH4V	TGCA	4 cut(s)	8, 302, 482, 740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 182, 299, 418, 446, 737
HpyF3I	CTNAG	5 cut(s)	168, 282, 399, 422, 732
HpySE526I	ACGT	2 cut(s)	258, 780
Hsp92II	CATG	4 cut(s)	325, 545, 790, 832
Kzo9I	GATC	2 cut(s)	285, 509
LguI	GCTCTTC	2 cut(s)	581, 738
LmnI	GCTCC	2 cut(s)	181, 505
Lsp1109I	GCAGC	4 cut(s)	7, 20, 160, 829
LweI	GCATC	2 cut(s)	289, 336
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	2 cut(s)	258, 780
MaeIII	GTNAC	5 cut(s)	13, 157, 455, 464, 756
MalI	GATC	2 cut(s)	287, 511
MboI	GATC	2 cut(s)	285, 509
MboII	GAAGA	6 cut(s)	319, 557, 568, 640, 755, 898
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	154, 451
MluCI	AATT	4 cut(s)	435, 495, 620, 816
MlyI	GAGTC	2 cut(s)	276, 461
MroXI	GAANNNNTTC	2 cut(s)	236, 527
MslI	CAYNNNNRTG	2 cut(s)	517, 830
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	306, 316
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	2 cut(s)	306, 316
MwoI	GCNNNNNNNGC	6 cut(s)	17, 182, 299, 418, 446, 737
NdeII	GATC	2 cut(s)	285, 509
NlaIII	CATG	4 cut(s)	325, 545, 790, 832
NlaIV	GGNNCC	1 cut(s)	645
NmuCI	GTSAC	3 cut(s)	157, 455, 464
NspI	RCATGY	1 cut(s)	790
PaqCI	CACCTGC	1 cut(s)	190
PciI	ACATGT	1 cut(s)	786
PciSI	GCTCTTC	2 cut(s)	581, 738
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	2 cut(s)	236, 527
PfeI	GAWTC	2 cut(s)	90, 379
PkrI	GCNGC	5 cut(s)	7, 10, 22, 175, 844
PleI	GAGTC	2 cut(s)	275, 461
PpsI	GAGTC	2 cut(s)	275, 461
PscI	ACATGT	1 cut(s)	786
Psp6I	CCWGG	2 cut(s)	304, 314
PspGI	CCWGG	2 cut(s)	304, 314
PspN4I	GGNNCC	1 cut(s)	645
PspPI	GGNCC	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	431, 490, 713
RsaNI	GTAC	3 cut(s)	430, 489, 712
RseI	CAYNNNNRTG	2 cut(s)	517, 830
SapI	GCTCTTC	2 cut(s)	581, 738
SatI	GCNGC	5 cut(s)	6, 9, 21, 174, 843
Sau3AI	GATC	2 cut(s)	285, 509
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	2 cut(s)	276, 461
ScrFI	CCNGG	2 cut(s)	306, 316
SduI	GDGCHC	2 cut(s)	154, 451
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	289, 336
SfcI	CTRYAG	2 cut(s)	6, 352
SmiMI	CAYNNNNRTG	2 cut(s)	517, 830
SmlI	CTYRAG	3 cut(s)	98, 761, 797
SmoI	CTYRAG	3 cut(s)	98, 761, 797
Sse9I	AATT	4 cut(s)	435, 495, 620, 816
SsiI	CCGC	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	304, 314
StyI	CCWWGG	2 cut(s)	186, 451
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	2 cut(s)	261, 783
TasI	AATT	4 cut(s)	435, 495, 620, 816
TatI	WGTACW	2 cut(s)	429, 711
TfiI	GAWTC	2 cut(s)	90, 379
TscAI	CASTG	4 cut(s)	172, 295, 340, 609
TseFI	GTSAC	3 cut(s)	157, 455, 464
TseI	GCWGC	5 cut(s)	5, 8, 20, 173, 842
Tsp45I	GTSAC	3 cut(s)	157, 455, 464
TspDTI	ATGAA	3 cut(s)	18, 558, 647
TspRI	CASTG	4 cut(s)	172, 295, 340, 609
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	1 cut(s)	790
XmiI	GTMKAC	2 cut(s)	783, 915
XmnI	GAANNNNTTC	2 cut(s)	236, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.