MD15G1244500.v1.1

Ferredoxin-NADP reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
20094482 .. 20097366
2885 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1244500.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGCTGCAGCTGTAACTGCTGCTGTCTCCTTCCCCTCCTCCAAGTCCTCCGCCCTCCCCACCAGGACCTCCATAATCTCACCTGACAGAATCACCCTAAAAAAGGTTCCTTTGTACAACAACAATGCTGGTGGGAGAGTGGCCTTGATCAGAGCCCAGGTGACCACCACCGAGCCTGCTCCACCTGCCAAGGTTGTGAAGGAATCCAAGAAGCAAGAAGAAGGGGTTGTTGTCAACAAATTCAAGCCCAAGAATCCCTACACTGGCAGAGTCCTTCTCAACACTAAGATCACTGCTGATGATGCACCTGGTGAGACCTGGCACATGGTCTTTAGCACTGAAGGAGAGGTGCCCTACAGAGAAGGGCAGTCCATTGGAGTTATTCCAGACGGTATTGACAAAAATGGGAAGCCTCACAAGCTGAGGTTGTACTCAATCGCCAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTGTTTCTCTGTGTGTGAAACGTCTTGTGTACACCAATGACGCAGGCGAAATTGTTAAGGGAGTGTGTTCAAACTTTTTGTGTGACTTGAAGCCTGGGAGTGACGTCACGATCACCGGACCAGTTGGGAAAGAAATGCTTATGCCAAAGGATCCTAATGCAACCATCATCATGCTTGGAACTGGAACTGGAATCGCTCCTTTTCGATCATTCTTGTGGAAAATGTTTTTCGAGAAGCATGAAGACTACAAGTTCAACGGTTTGGCATGGCTCTTCTTGGGTGTTCCTACAAGTAGCTCATTGCTCTACAAGGAGGAATTCGAGAAGATGAAGGAGAAGGCCCCCGATAACTTCAGGCTTGACTTTGCCGTCAGCAGAGAGCAAACCAACGAGAAGGGAGAGAAGATGTACATCCAAACCAGAATGGCTCAGTATGCAGAAGAGCTATGGGAGTTACTCAAGAAAGACAACACCTACGTTTACATGTGTGGTCTCAAGGGAATGGAGAAGGGTATTGATGACATCATGGTGTCGTTGGCCGCGAAAGACGGCATTGACTGGATAGACTACAAGAAGCAGTTGAAGAAAGCAGAGCAATGGAATGTGGAAGTCTACTAA

Protein Analysis

364

Amino Acids

40.38

Weight (kDa)

8.73

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 216 - 330 4.1e-27 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010146)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
AasI GACNNNNNNGTC 1 cut(s) 842
AatII GACGTC 1 cut(s) 582
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 349
AccI GTMKAC 1 cut(s) 1086
AccII CGCG 1 cut(s) 1016
AciI CCGC 2 cut(s) 51, 1014
AclWI GGATC 2 cut(s) 620, 633
AcoI YGGCCR 1 cut(s) 1011
AcsI RAATTY 2 cut(s) 239, 791
AcuI CTGAAG 2 cut(s) 360, 811
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 4 cut(s) 116, 431, 506, 884
AfiI CCNNNNNNNGG 2 cut(s) 103, 263
AflIII ACRYGT 1 cut(s) 957
AgsI TTSAA 5 cut(s) 244, 546, 565, 730, 1057
AjnI CCWGG 5 cut(s) 62, 156, 307, 317, 568
AluBI AGCT 4 cut(s) 11, 421, 771, 919
AluI AGCT 4 cut(s) 11, 421, 771, 919
Alw26I GTCTC 4 cut(s) 31, 308, 459, 971
AlwI GGATC 2 cut(s) 620, 633
AoxI GGCC 3 cut(s) 141, 813, 1011
ApeKI GCWGC 3 cut(s) 5, 8, 20
ApoI RAATTY 2 cut(s) 239, 791
AspS9I GGNCC 3 cut(s) 66, 593, 814
AsuHPI GGTGA 6 cut(s) 72, 85, 172, 323, 467, 580
AvaII GGWCC 2 cut(s) 66, 593
BaeGI GKGCMC 2 cut(s) 354, 451
BamHI GGATCC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 723
BbvCI CCTCAGC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 7, 20
BccI CCATC 1 cut(s) 647
BceAI ACGGC 2 cut(s) 827, 1039
BciT130I CCWGG 5 cut(s) 64, 158, 309, 319, 570
BclI TGATCA 1 cut(s) 147
BcoDI GTCTC 4 cut(s) 31, 308, 459, 971
BfmI CTRYAG 2 cut(s) 6, 355
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 4 cut(s) 6, 9, 21, 1014
BlsI GCNGC 4 cut(s) 7, 10, 22, 1015
Bme1390I CCNGG 5 cut(s) 64, 158, 309, 319, 570
Bme18I GGWCC 2 cut(s) 66, 593
BmgT120I GGNCC 3 cut(s) 66, 593, 814
BmiI GGNNCC 4 cut(s) 108, 351, 627, 816
BmrFI CCNGG 5 cut(s) 64, 158, 309, 319, 570
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 261, 293
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 917, 953
BsaBI GATNNNNATC 1 cut(s) 884
BsaHI GRCGYC 1 cut(s) 579
BsaI GGTCTC 2 cut(s) 308, 971
BsaJI CCNNGG 4 cut(s) 156, 189, 451, 569
BsaWI WCCGGW 1 cut(s) 590
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 263
Bse1I ACTGG 5 cut(s) 268, 596, 661, 667, 1037
Bse3DI GCAATG 2 cut(s) 773, 1076
Bse8I GATNNNNATC 1 cut(s) 884
BseBI CCWGG 5 cut(s) 64, 158, 309, 319, 570
BseDI CCNNGG 4 cut(s) 156, 189, 451, 569
BseGI GGATG 1 cut(s) 885
BseJI GATNNNNATC 1 cut(s) 884
BseLI CCNNNNNNNGG 2 cut(s) 103, 263
BseMI GCAATG 2 cut(s) 773, 1076
BseMII CTCAG 2 cut(s) 413, 917
BseNI ACTGG 5 cut(s) 268, 596, 661, 667, 1037
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 2 cut(s) 354, 451
BseXI GCAGC 2 cut(s) 7, 20
Bsh1236I CGCG 1 cut(s) 1016
BshFI GGCC 3 cut(s) 143, 815, 1013
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 103, 263
BsmAI GTCTC 4 cut(s) 31, 308, 459, 971
BsnI GGCC 3 cut(s) 143, 815, 1013
Bso31I GGTCTC 2 cut(s) 308, 971
Bsp1286I GDGCHC 3 cut(s) 157, 354, 451
Bsp1407I TGTACA 3 cut(s) 114, 504, 882
Bsp143I GATC 5 cut(s) 147, 288, 585, 625, 680
BspACI CCGC 2 cut(s) 51, 1014
BspANI GGCC 3 cut(s) 143, 815, 1013
BspCNI CTCAG 2 cut(s) 414, 916
BspFNI CGCG 1 cut(s) 1016
BspLI GGNNCC 4 cut(s) 108, 351, 627, 816
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 620, 633
BspQI GCTCTTC 2 cut(s) 752, 909
BspT107I GGYRCC 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 308, 971
BsrDI GCAATG 2 cut(s) 773, 1076
BsrGI TGTACA 3 cut(s) 114, 504, 882
BsrI ACTGG 5 cut(s) 268, 596, 661, 667, 1037
BssECI CCNNGG 4 cut(s) 156, 189, 451, 569
BssMI GATC 5 cut(s) 147, 288, 585, 625, 680
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 2 cut(s) 189, 451
Bst2UI CCWGG 5 cut(s) 64, 158, 309, 319, 570
Bst4CI ACNGT 3 cut(s) 392, 478, 734
Bst6I CTCTTC 2 cut(s) 752, 909
BstACI GRCGYC 1 cut(s) 579
BstAUI TGTACA 3 cut(s) 114, 504, 882
BstC8I GCNNGC 3 cut(s) 177, 442, 520
BstDEI CTNAG 3 cut(s) 285, 422, 903
BstEII GGTNACC 1 cut(s) 160
BstENI CCTNNNNNAGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 885
BstFNI CGCG 1 cut(s) 1016
BstKTI GATC 5 cut(s) 150, 291, 588, 628, 683
BstMAI GTCTC 4 cut(s) 31, 308, 459, 971
BstMBI GATC 5 cut(s) 147, 288, 585, 625, 680
BstMWI GCNNNNNNNGC 6 cut(s) 17, 185, 302, 418, 446, 908
BstNI CCWGG 5 cut(s) 64, 158, 309, 319, 570
BstNSI RCATGY 1 cut(s) 961
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 5 cut(s) 62, 156, 307, 317, 568
BstSFI CTRYAG 2 cut(s) 6, 355
BstSLI GKGCMC 2 cut(s) 354, 451
BstUI CGCG 1 cut(s) 1016
BstV1I GCAGC 2 cut(s) 7, 20
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 625
BstYI RGATCY 1 cut(s) 625
BsuRI GGCC 3 cut(s) 143, 815, 1013
BtsCI GGATG 1 cut(s) 885
BtsI GCAGTG 2 cut(s) 291, 451
BtsIMutI CAGTG 4 cut(s) 261, 291, 336, 451
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 177, 442, 520
Cfr13I GGNCC 3 cut(s) 66, 593, 814
CseI GACGC 1 cut(s) 524
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 4 cut(s) 115, 430, 505, 883
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 6 cut(s) 325, 646, 713, 741, 958, 1000
CviQI GTAC 4 cut(s) 115, 430, 505, 883
DdeI CTNAG 3 cut(s) 285, 422, 903
DpnI GATC 5 cut(s) 149, 290, 587, 627, 682
DpnII GATC 5 cut(s) 147, 288, 585, 625, 680
DraIII CACNNNGTG 1 cut(s) 311
DrdI GACNNNNNNGTC 1 cut(s) 842
DseDI GACNNNNNNGTC 1 cut(s) 842
EaeI YGGCCR 1 cut(s) 1011
Eam1104I CTCTTC 2 cut(s) 752, 909
EarI CTCTTC 2 cut(s) 752, 909
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 189, 451
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 2 cut(s) 308, 971
Eco47I GGWCC 2 cut(s) 66, 593
Eco57I CTGAAG 2 cut(s) 360, 811
Eco91I GGTNACC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 101
EcoO109I RGGNCCY 2 cut(s) 66, 814
EcoO65I GGTNACC 1 cut(s) 160
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 5 cut(s) 62, 156, 307, 317, 568
EcoT14I CCWWGG 2 cut(s) 189, 451
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 2 cut(s) 189, 451
FaeI CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 6 cut(s) 324, 645, 712, 740, 957, 999
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 1086
Fnu4HI GCNGC 4 cut(s) 6, 9, 21, 1014
FokI GGATG 1 cut(s) 872
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 4 cut(s) 6, 9, 21, 1014
GluI GCNGC 4 cut(s) 6, 9, 21, 1014
HaeIII GGCC 3 cut(s) 143, 815, 1013
HapII CCGG 1 cut(s) 591
HgaI GACGC 1 cut(s) 524
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 6 cut(s) 90, 203, 253, 270, 467, 666
HpaII CCGG 1 cut(s) 591
HphI GGTGA 6 cut(s) 72, 85, 172, 323, 467, 580
Hpy166II GTNNAC 5 cut(s) 235, 505, 507, 955, 1087
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 5 cut(s) 386, 583, 706, 796, 934
Hpy8I GTNNAC 5 cut(s) 235, 505, 507, 955, 1087
HpyCH4III ACNGT 3 cut(s) 392, 478, 734
HpyCH4IV ACGT 3 cut(s) 496, 579, 951
HpyCH4V TGCA 4 cut(s) 8, 305, 635, 911
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 185, 302, 418, 446, 908
HpyF3I CTNAG 3 cut(s) 285, 422, 903
HpySE526I ACGT 3 cut(s) 496, 579, 951
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 5 cut(s) 147, 288, 585, 625, 680
LguI GCTCTTC 2 cut(s) 752, 909
LmnI GCTCC 2 cut(s) 184, 676
Lsp1109I GCAGC 2 cut(s) 7, 20
LweI GCATC 1 cut(s) 292
MabI ACCWGGT 1 cut(s) 307
MaeII ACGT 3 cut(s) 496, 579, 951
MaeIII GTNAC 7 cut(s) 13, 160, 455, 557, 575, 580, 927
MalI GATC 5 cut(s) 149, 290, 587, 627, 682
MboI GATC 5 cut(s) 147, 288, 585, 625, 680
MboII GAAGA 7 cut(s) 230, 728, 739, 811, 889, 926, 1069
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 3 cut(s) 157, 354, 451
MluCI AATT 3 cut(s) 239, 525, 791
MlyI GAGTC 2 cut(s) 279, 461
MnlI CCTC 9 cut(s) 46, 49, 58, 65, 79, 340, 417, 423, 781
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 3 cut(s) 644, 688, 1001
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 5 cut(s) 64, 158, 309, 319, 570
MvaI CCWGG 5 cut(s) 64, 158, 309, 319, 570
MvnI CGCG 1 cut(s) 1016
MwoI GCNNNNNNNGC 6 cut(s) 17, 185, 302, 418, 446, 908
NdeII GATC 5 cut(s) 147, 288, 585, 625, 680
NlaIII CATG 6 cut(s) 328, 649, 716, 744, 961, 1003
NlaIV GGNNCC 4 cut(s) 108, 351, 627, 816
NmuCI GTSAC 5 cut(s) 160, 455, 557, 575, 580
NspI RCATGY 1 cut(s) 961
PaqCI CACCTGC 1 cut(s) 193
PciI ACATGT 1 cut(s) 957
PciSI GCTCTTC 2 cut(s) 752, 909
PcsI WCGNNNNNNNCGW 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 90, 203, 253, 666
PkrI GCNGC 4 cut(s) 7, 10, 22, 1015
PleI GAGTC 2 cut(s) 278, 461
PpsI GAGTC 2 cut(s) 278, 461
PpuMI RGGWCCY 1 cut(s) 66
PscI ACATGT 1 cut(s) 957
Psp5II RGGWCCY 1 cut(s) 66
Psp6I CCWGG 5 cut(s) 62, 156, 307, 317, 568
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 5 cut(s) 62, 156, 307, 317, 568
PspN4I GGNNCC 4 cut(s) 108, 351, 627, 816
PspPI GGNCC 3 cut(s) 66, 593, 814
PspPPI RGGWCCY 1 cut(s) 66
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 4 cut(s) 116, 431, 506, 884
RsaNI GTAC 4 cut(s) 115, 430, 505, 883
RseI CAYNNNNRTG 3 cut(s) 644, 688, 1001
SapI GCTCTTC 2 cut(s) 752, 909
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 4 cut(s) 6, 9, 21, 1014
Sau3AI GATC 5 cut(s) 147, 288, 585, 625, 680
Sau96I GGNCC 3 cut(s) 66, 593, 814
SchI GAGTC 2 cut(s) 279, 461
ScrFI CCNGG 5 cut(s) 64, 158, 309, 319, 570
SduI GDGCHC 3 cut(s) 157, 354, 451
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 6, 355
SinI GGWCC 2 cut(s) 66, 593
SmiMI CAYNNNNRTG 3 cut(s) 644, 688, 1001
SmlI CTYRAG 2 cut(s) 932, 968
SmoI CTYRAG 2 cut(s) 932, 968
Sse9I AATT 3 cut(s) 239, 525, 791
SsiI CCGC 2 cut(s) 51, 1014
StyD4I CCNGG 5 cut(s) 62, 156, 307, 317, 568
StyI CCWWGG 2 cut(s) 189, 451
TaaI ACNGT 3 cut(s) 392, 478, 734
TaiI ACGT 3 cut(s) 499, 582, 954
TaqI TCGA 3 cut(s) 679, 705, 795
TasI AATT 3 cut(s) 239, 525, 791
TatI WGTACW 4 cut(s) 114, 429, 504, 882
TauI GCSGC 1 cut(s) 1016
TfiI GAWTC 4 cut(s) 90, 203, 253, 666
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 4 cut(s) 268, 298, 343, 451
TseFI GTSAC 5 cut(s) 160, 455, 557, 575, 580
TseI GCWGC 3 cut(s) 5, 8, 20
Tsp45I GTSAC 5 cut(s) 160, 455, 557, 575, 580
TspDTI ATGAA 2 cut(s) 729, 818
TspRI CASTG 4 cut(s) 268, 298, 343, 451
VpaK11BI GGWCC 2 cut(s) 66, 593
XagI CCTNNNNNAGG 1 cut(s) 101
XapI RAATTY 2 cut(s) 239, 791
XceI RCATGY 1 cut(s) 961
XmiI GTMKAC 1 cut(s) 1086
ZraI GACGTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.