Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010146

Physical Location & Seq

Genomic Coordinates Reverse (-)

11201100 .. 11202258

Gene Structure 1159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG131100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACAGGACCAGTTGGCAAAGAAATGCTTATGCCAAAAGATCCTAATGCAACCGTCATCATGCTTGCAACTGGTACTGGAATTGCTCCTTTCAGATCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACAAGTTTGAAGGTTTGGCTTGGCTCTTCTTGGGTGTTCCCACCAGTAGCTCACTGCTTTACAAGGAGGAATTTGAGAAGATGAAAGAGAAGGCCCCCGATAACTTCAGGCTTGACTTCGCTGTCAGCAGAGAGCAAACCAACGAGAAGGGCGAGAAAATGTACATTCAAACCAGAATGGCTCAGTATGCAGAAGAGCTATGGGAGTTACTCAAGAAGGACAACACCTACGTCTACATGTGCGGTCTCAAGGGAATGGAGAAGGGAATTGATGACATCATGGTGTCATTGGCTGCCAAAGACGGCATTGACTGGTTAGACTACAAAAAGCAGTTGAAGAAAGCAGAGCAATGGAATGTGGAAGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009055 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009767 GO:0009941 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0019684 GO:0019904 GO:0022900 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045156 GO:0045157 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0097159 GO:0098542 GO:0098796 GO:0098807 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

168

Amino Acids

19.61

Weight (kDa)

5.38

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_1	PF00175	21 - 135	2.7e-28	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20020 AT1G20020 AT1G20020 AT5G66190 AT5G66190
fragaria_vesca	FvH4_1g11730
malus_domestica	MD02G1130800.v1.1 MD15G1244500.v1.1
prunus_persica	Prupe.7G169200_v2.0.a1
pyrus_communis	pycom02g10250 pycom15g21530
rosa_chinensis	RchiOBHm_Chr2g0099331
rosa_laevigata	RLG00000016872
rosa_multiflora	Rmu_sc0009774.1_g000008
rosa_roxburghii	Rroxscaffold_2G00143200
rosa_rugosa	Rorug02G0078700
rosa_samantha	Rh2AG128200 Rh2BG131100 Rh2CG132300 Rh2DG132700
rosa_wichuraiana	Rw2G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AccI	GTMKAC	2 cut(s)	369, 501
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	2 cut(s)	76, 299
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	146, 305, 472
AluBI	AGCT	2 cut(s)	186, 334
AluI	AGCT	2 cut(s)	186, 334
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	35
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	8, 229
AvaII	GGWCC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 229
BmiI	GGNNCC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	332, 368
BsaI	GGTCTC	1 cut(s)	386
Bse1I	ACTGG	5 cut(s)	11, 76, 82, 180, 452
Bse3DI	GCAATG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	5 cut(s)	11, 76, 82, 180, 452
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	40, 95
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	35
BspQI	GCTCTTC	2 cut(s)	167, 324
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	491
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	5 cut(s)	11, 76, 82, 180, 452
BssMI	GATC	2 cut(s)	40, 95
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	167, 324
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	43, 98
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	40, 95
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	230
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	8, 229
Csp6I	GTAC	2 cut(s)	75, 298
CviAII	CATG	4 cut(s)	61, 128, 373, 415
CviJI	RGCY	8 cut(s)	155, 160, 186, 230, 247, 317, 334, 428
CviKI_1	RGCY	8 cut(s)	155, 160, 186, 230, 247, 317, 334, 428
CviQI	GTAC	2 cut(s)	75, 298
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	42, 97
DpnII	GATC	2 cut(s)	40, 95
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	167, 324
EarI	CTCTTC	2 cut(s)	167, 324
Eco31I	GGTCTC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	229
FaeI	CATG	4 cut(s)	64, 131, 376, 418
FaiI	YATR	7 cut(s)	32, 62, 129, 324, 337, 374, 416
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	4 cut(s)	60, 127, 372, 414
FblI	GTMKAC	2 cut(s)	369, 501
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	4 cut(s)	64, 131, 376, 418
Hpy166II	GTNNAC	2 cut(s)	370, 502
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	2 cut(s)	370, 502
HpyAV	CCTTC	5 cut(s)	140, 220, 277, 346, 391
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	50, 68, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	4 cut(s)	64, 131, 376, 418
Kzo9I	GATC	2 cut(s)	40, 95
LguI	GCTCTTC	2 cut(s)	167, 324
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	7 cut(s)	24, 57, 63, 193, 229, 322, 433
Lsp1109I	GCAGC	1 cut(s)	415
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	2 cut(s)	42, 97
MboI	GATC	2 cut(s)	40, 95
MboII	GAAGA	5 cut(s)	143, 154, 226, 341, 484
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	3 cut(s)	81, 206, 402
MnlI	CCTC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	113
MslI	CAYNNNNRTG	2 cut(s)	103, 416
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	40, 95
NlaIII	CATG	4 cut(s)	64, 131, 376, 418
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	376
PciI	ACATGT	1 cut(s)	372
PciSI	GCTCTTC	2 cut(s)	167, 324
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	8, 229
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	76, 299
RsaNI	GTAC	2 cut(s)	75, 298
RseI	CAYNNNNRTG	2 cut(s)	103, 416
SapI	GCTCTTC	2 cut(s)	167, 324
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	40, 95
Sau96I	GGNCC	2 cut(s)	8, 229
SetI	ASST	5 cut(s)	151, 188, 336, 365, 369
SinI	GGWCC	1 cut(s)	8
SmiMI	CAYNNNNRTG	2 cut(s)	103, 416
SmlI	CTYRAG	2 cut(s)	347, 383
SmoI	CTYRAG	2 cut(s)	347, 383
Sse9I	AATT	3 cut(s)	81, 206, 402
SsiI	CCGC	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	369
TasI	AATT	3 cut(s)	81, 206, 402
TatI	WGTACW	1 cut(s)	297
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	144, 233
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	369, 501
XmnI	GAANNNNTTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.