AT1G20300

Pentacotripeptide-repeat region of PRORP

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
7029629 .. 7031535
1907 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20300.1

Sequence Viewer

Length: 1614 bp
ATGGCGTTACTCCGATCAAAACTCCATCTTTCTCGAACCCTTTCCTTCATCTCTCCTCTTCTACCCAAAACCTTCTCCACCTCGGCAACTTCTCTACTCAGTGACCATGAAAACGACGAATCCGCCGCCACCATAACCGCCGCCGTCTCTGTCCCAATCTCACCTCTGTTAACTCCGGAAGACACACAAACCGTAGAAAAGTTCCATTCAATCATCAAAGACCACTATCGCAAAAACCCTACAAGCCCCAACGACGCCATCTTAAACCCTAGCTTAACTCTCCATGCTCTCTCCCTCGATTTCTCCCAAATTGAAACTTCCCAAGTCTCTCCCTCCGTCGTCCGATGCGTGATAGAGAAGTGCGGCAGTGTCCGCCACGGAATCCCTCTTCACCAATCTCTAGCTTTCTTCAATTGGGCAACTTCACGAGACGATTACGACCACAAATCACCTCATCCTTACAACGAAATGATCGATCTTTCAGGAAAGGTTAGACAATTCGACTTAGCTTGGCATTTGATTGATCTAATGAAATCCAGAAACGTAGAGATTTCGATTGAAACCTTCACGATTTTGATTAGACGTTATGTTAGAGCTGGATTAGCTTCAGAGGCTGTACATTGCTTTAATCGTATGGAAGATTACGGTTGCGTACCTGATAAAATCGCGTTTTCCATAGTTATTAGTAACCTTTCTAGGAAGAGGAGAGCTAGTGAAGCTCAGTCGTTTTTCGATAGTTTGAAAGATAGATTCGAGCCTGATGTTATAGTTTACACCAATTTGGTTCGTGGTTGGTGTAGAGCTGGTGAAATCTCTGAGGCAGAGAAAGTGTTCAAGGAGATGAAGTTGGCTGGGATTGAACCTAATGTGTATACTTACAGTATTGTGATCGATGCGTTGTGTAGATGCGGGCAAATCAGCCGTGCGCATGATGTGTTTGCGGATATGTTAGATTCAGGTTGTGCGCCGAATGCGATTACTTTTAACAACTTGATGAGGGTTCATGTGAAAGCAGGAAGAACAGAGAAGGTTTTGCAGGTTTATAACCAGATGAAGAAGCTAGGATGTGAGCCTGATACTATTACTTATAACTTCCTTATTGAGGCTCATTGCAGAGACGAGAATCTGGAAAACGCGGTCAAGGTTTTGAACACGATGATCAAGAAGAAGTGTGAAGTGAATGCTTCGACTTTCAATACGATATTTAGGTACATTGAGAAGAAGAGAGACGTGAATGGCGCTCATAGGATGTATTCGAAGATGATGGAAGCGAAATGTGAGCCGAATACGGTGACTTATAATATACTGATGAGGATGTTTGTCGGGTCAAAATCTACTGATATGGTTCTGAAGATGAAGAAAGAGATGGATGATAAAGAAGTTGAGCCGAATGTGAATACTTATAGGCTTTTGGTTACGATGTTTTGTGGGATGGGACATTGGAATAATGCTTATAAGTTGTTTAAAGAAATGGTTGAAGAGAAGTGTTTGACACCGAGCTTGTCTTTATATGAGATGGTTCTTGCTCAGTTAAGAAGAGCTGGGCAATTGAAGAAGCATGAAGAGCTGGTGGAGAAGATGATTCAGAAGGGACTCGTTGCTCGGCCATTGTAG

Protein Analysis

537

Amino Acids

61.21

Weight (kDa)

8.5

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 154 - 197 1.4e-07 PPR repeat family
PPR_3 PF13812 173 - 229 8.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 186 - 232 9.6e-09 PPR repeat family
TPR_24 PF23276 240 - 351 3.5e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 242 - 353 1.5e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 249 - 299 2.5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 251 - 282 3.2e-10 PPR repeat
PPR_2 PF13041 253 - 302 1.6e-18 PPR repeat family
PPR PF01535 257 - 286 6e-07 PPR repeat
PPR_1 PF12854 285 - 316 6.4e-10 PPR repeat
PPR_3 PF13812 285 - 336 1.8e-09 Pentatricopeptide repeat domain
PPR PF01535 291 - 321 1.6e-06 PPR repeat
PPR_2 PF13041 296 - 333 3.9e-09 PPR repeat family
PPR_3 PF13812 312 - 369 3.5e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 323 - 372 1.9e-16 PPR repeat family
PPR PF01535 326 - 356 2.5e-06 PPR repeat
TPR_24 PF23276 342 - 447 8.2e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 347 - 405 2.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 355 - 386 7.3e-11 PPR repeat
PPR_2 PF13041 358 - 403 1.2e-12 PPR repeat family
PPR_long PF17177 362 - 486 1.7e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 382 - 442 2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 394 - 440 1.1e-11 PPR repeat family
PPR_2 PF13041 428 - 476 5.8e-11 PPR repeat family
PPR_3 PF13812 452 - 508 2.6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 459 - 492 9.1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014352)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 1044, 1089, 1299, 1455
Acc16I TGCGCA 1 cut(s) 927
Acc36I ACCTGC 1 cut(s) 1027
AccI GTMKAC 1 cut(s) 872
AccII CGCG 2 cut(s) 668, 1136
AccIII TCCGGA 1 cut(s) 175
AciI CCGC 9 cut(s) 123, 126, 138, 141, 363, 373, 909, 941, 1136
AcoI YGGCCR 1 cut(s) 1604
AcuI CTGAAG 2 cut(s) 591, 1370
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 618, 654, 1211
AfiI CCNNNNNNNGG 1 cut(s) 1102
AjiI CACGTC 1 cut(s) 1231
Alw26I GTCTC 5 cut(s) 151, 331, 423, 1110, 1221
AlwNI CAGNNNCTG 1 cut(s) 614
Aor13HI TCCGGA 1 cut(s) 175
AoxI GGCC 1 cut(s) 1604
Asp700I GAANNNNTTC 2 cut(s) 40, 830
AspLEI GCGC 3 cut(s) 928, 967, 1241
AsuHPI GGTGA 5 cut(s) 153, 383, 441, 818, 1303
AsuII TTCGAA 1 cut(s) 1256
BauI CACGAG 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 6 cut(s) 33, 266, 1258, 1360, 1426, 1510
BceAI ACGGC 2 cut(s) 128, 906
BclI TGATCA 1 cut(s) 1158
BcoDI GTCTC 5 cut(s) 151, 331, 423, 1110, 1221
BfaI CTAG 5 cut(s) 270, 401, 696, 711, 1061
BfoI RGCGCY 1 cut(s) 1242
BfuAI ACCTGC 1 cut(s) 1027
BisI GCNGC 3 cut(s) 126, 141, 364
BlsI GCNGC 3 cut(s) 127, 142, 365
BmgBI CACGTC 1 cut(s) 1231
BmsI GCATC 3 cut(s) 335, 883, 896
BpiI GAAGAC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 1256
Bsa29I ATCGAT 2 cut(s) 474, 891
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 81, 376
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 697, 727, 830, 860
Bsc4I CCNNNNNNNGG 1 cut(s) 1102
Bse3DI GCAATG 2 cut(s) 619, 1108
BseAI TCCGGA 1 cut(s) 175
BseCI ATCGAT 2 cut(s) 474, 891
BseDI CCNNGG 2 cut(s) 81, 376
BseGI GGATG 6 cut(s) 454, 1070, 1254, 1320, 1375, 1437
BseLI CCNNNNNNNGG 1 cut(s) 1102
BseMI GCAATG 2 cut(s) 619, 1108
BseMII CTCAG 4 cut(s) 112, 734, 807, 1541
BseRI GAGGAG 2 cut(s) 45, 718
BseYI CCCAGC 2 cut(s) 851, 1541
Bsh1236I CGCG 2 cut(s) 668, 1136
BshFI GGCC 1 cut(s) 1606
BshVI ATCGAT 2 cut(s) 474, 891
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 3 cut(s) 137, 1449, 1605
BslI CCNNNNNNNGG 1 cut(s) 1102
BsmAI GTCTC 5 cut(s) 151, 331, 423, 1110, 1221
BsmBI CGTCTC 4 cut(s) 151, 423, 1110, 1221
BsmFI GGGAC 3 cut(s) 137, 1449, 1605
BsmI GAATGC 2 cut(s) 976, 1186
BsnI GGCC 1 cut(s) 1606
Bsp119I TTCGAA 1 cut(s) 1256
Bsp13I TCCGGA 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 616
Bsp143I GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
BspACI CCGC 9 cut(s) 123, 126, 138, 141, 363, 373, 909, 941, 1136
BspANI GGCC 1 cut(s) 1606
BspCNI CTCAG 4 cut(s) 111, 733, 808, 1540
BspDI ATCGAT 2 cut(s) 474, 891
BspEI TCCGGA 1 cut(s) 175
BspFNI CGCG 2 cut(s) 668, 1136
BspMI ACCTGC 1 cut(s) 1027
BspQI GCTCTTC 2 cut(s) 1531, 1557
BspT104I TTCGAA 1 cut(s) 1256
BsrDI GCAATG 2 cut(s) 619, 1108
BsrGI TGTACA 1 cut(s) 616
BssECI CCNNGG 2 cut(s) 81, 376
BssMI GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
BssNAI GTATAC 1 cut(s) 873
BssNI GRCGYC 1 cut(s) 255
BssSI CACGAG 1 cut(s) 426
Bst1107I GTATAC 1 cut(s) 873
Bst2BI CACGAG 1 cut(s) 426
Bst4CI ACNGT 4 cut(s) 193, 647, 881, 1291
Bst6I CTCTTC 7 cut(s) 63, 393, 695, 1217, 1473, 1531, 1557
BstACI GRCGYC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 616
BstBI TTCGAA 1 cut(s) 1256
BstC8I GCNNGC 1 cut(s) 911
BstDEI CTNAG 5 cut(s) 98, 505, 720, 816, 1527
BstDSI CCRYGG 1 cut(s) 376
BstENI CCTNNNNNAGG 1 cut(s) 1100
BstF5I GGATG 6 cut(s) 454, 1070, 1254, 1320, 1375, 1437
BstFNI CGCG 2 cut(s) 668, 1136
BstH2I RGCGCY 1 cut(s) 1242
BstHHI GCGC 3 cut(s) 928, 967, 1241
BstKTI GATC 6 cut(s) 17, 474, 478, 526, 891, 1161
BstMAI GTCTC 5 cut(s) 151, 331, 423, 1110, 1221
BstMBI GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
BstMWI GCNNNNNNNGC 6 cut(s) 372, 602, 611, 716, 971, 1564
BstUI CGCG 2 cut(s) 668, 1136
BstV2I GAAGAC 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 873
Bsu15I ATCGAT 2 cut(s) 474, 891
BsuRI GGCC 1 cut(s) 1606
BsuTUI ATCGAT 2 cut(s) 474, 891
BtgI CCRYGG 1 cut(s) 376
BtrI CACGTC 1 cut(s) 1231
BtsCI GGATG 6 cut(s) 454, 1070, 1254, 1320, 1375, 1437
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 2 cut(s) 106, 373
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 1 cut(s) 911
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 3 cut(s) 928, 967, 1241
ClaI ATCGAT 2 cut(s) 474, 891
CseI GACGC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 617, 653, 1210
CviAII CATG 5 cut(s) 107, 284, 929, 1004, 1559
CviQI GTAC 3 cut(s) 617, 653, 1210
DdeI CTNAG 5 cut(s) 98, 505, 720, 816, 1527
DpnI GATC 6 cut(s) 16, 473, 477, 525, 890, 1160
DpnII GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
DraI TTTAAA 1 cut(s) 1465
EaeI YGGCCR 1 cut(s) 1604
Eam1104I CTCTTC 7 cut(s) 63, 393, 695, 1217, 1473, 1531, 1557
EarI CTCTTC 7 cut(s) 63, 393, 695, 1217, 1473, 1531, 1557
EciI GGCGGA 2 cut(s) 112, 362
Eco57I CTGAAG 2 cut(s) 591, 1370
EcoNI CCTNNNNNAGG 1 cut(s) 1100
Esp3I CGTCTC 4 cut(s) 151, 423, 1110, 1221
FaeI CATG 5 cut(s) 110, 287, 932, 1007, 1562
FaqI GGGAC 3 cut(s) 137, 1449, 1605
FatI CATG 5 cut(s) 106, 283, 928, 1003, 1558
FauI CCCGC 1 cut(s) 902
FbaI TGATCA 1 cut(s) 1158
FblI GTMKAC 1 cut(s) 872
Fnu4HI GCNGC 3 cut(s) 126, 141, 364
FokI GGATG 6 cut(s) 441, 1077, 1261, 1327, 1382, 1444
Fsp4HI GCNGC 3 cut(s) 126, 141, 364
FspAI RTGCGCAY 1 cut(s) 927
FspBI CTAG 5 cut(s) 270, 401, 696, 711, 1061
FspI TGCGCA 1 cut(s) 927
GlaI GCGC 3 cut(s) 927, 966, 1240
GluI GCNGC 3 cut(s) 126, 141, 364
GsaI CCCAGC 2 cut(s) 855, 1545
HaeII RGCGCY 1 cut(s) 1242
HaeIII GGCC 1 cut(s) 1606
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 263
HhaI GCGC 3 cut(s) 928, 967, 1241
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 5 cut(s) 110, 287, 932, 1007, 1562
Hin6I GCGC 3 cut(s) 926, 965, 1239
HinP1I GCGC 3 cut(s) 926, 965, 1239
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 7 cut(s) 119, 381, 750, 953, 1123, 1582, 1593
HpaI GTTAAC 1 cut(s) 171
HpaII CCGG 1 cut(s) 176
HphI GGTGA 5 cut(s) 153, 383, 441, 818, 1303
Hpy166II GTNNAC 3 cut(s) 171, 772, 873
Hpy188I TCNGA 6 cut(s) 14, 344, 610, 817, 1350, 1587
Hpy188III TCNNGA 8 cut(s) 33, 176, 426, 483, 537, 568, 1127, 1162
Hpy8I GTNNAC 3 cut(s) 171, 772, 873
Hpy99I CGWCG 3 cut(s) 119, 257, 341
HpyAV CCTTC 5 cut(s) 55, 82, 574, 1021, 1582
HpyCH4III ACNGT 4 cut(s) 193, 647, 881, 1291
HpyCH4IV ACGT 3 cut(s) 543, 583, 1230
HpyCH4V TGCA 2 cut(s) 1036, 1113
HpyF10VI GCNNNNNNNGC 6 cut(s) 372, 602, 611, 716, 971, 1564
HpyF3I CTNAG 5 cut(s) 98, 505, 720, 816, 1527
HpySE526I ACGT 3 cut(s) 543, 583, 1230
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 5 cut(s) 110, 287, 932, 1007, 1562
HspAI GCGC 3 cut(s) 926, 965, 1239
Kpn2I TCCGGA 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 1158
KspAI GTTAAC 1 cut(s) 171
Kzo9I GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
LguI GCTCTTC 2 cut(s) 1531, 1557
LweI GCATC 3 cut(s) 335, 883, 896
MaeI CTAG 5 cut(s) 270, 401, 696, 711, 1061
MaeII ACGT 3 cut(s) 543, 583, 1230
MaeIII GTNAC 5 cut(s) 6, 101, 686, 1291, 1414
MalI GATC 6 cut(s) 16, 473, 477, 525, 890, 1160
MboI GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
MfeI CAATTG 2 cut(s) 412, 1547
MluCI AATT 5 cut(s) 309, 412, 497, 778, 1547
MlyI GAGTC 1 cut(s) 1587
MroI TCCGGA 1 cut(s) 175
MroXI GAANNNNTTC 2 cut(s) 40, 830
MseI TTAA 7 cut(s) 170, 263, 275, 627, 984, 1464, 1532
MspI CCGG 1 cut(s) 176
MunI CAATTG 2 cut(s) 412, 1547
Mva1269I GAATGC 2 cut(s) 976, 1186
MvnI CGCG 2 cut(s) 668, 1136
MwoI GCNNNNNNNGC 6 cut(s) 372, 602, 611, 716, 971, 1564
NdeII GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
NlaIII CATG 5 cut(s) 110, 287, 932, 1007, 1562
NmeAIII GCCGAG 2 cut(s) 62, 1582
NmuCI GTSAC 2 cut(s) 101, 1291
NsbI TGCGCA 1 cut(s) 927
NspV TTCGAA 1 cut(s) 1256
PciSI GCTCTTC 2 cut(s) 1531, 1557
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 471
PctI GAATGC 2 cut(s) 976, 1186
PdmI GAANNNNTTC 2 cut(s) 40, 830
PfeI GAWTC 6 cut(s) 119, 381, 750, 953, 1123, 1582
PkrI GCNGC 3 cut(s) 127, 142, 365
PleI GAGTC 1 cut(s) 1587
PpsI GAGTC 1 cut(s) 1587
PsiI TTATAA 4 cut(s) 1044, 1089, 1299, 1455
PspFI CCCAGC 2 cut(s) 851, 1541
PstNI CAGNNNCTG 1 cut(s) 614
RsaI GTAC 3 cut(s) 618, 654, 1211
RsaNI GTAC 3 cut(s) 617, 653, 1210
SapI GCTCTTC 2 cut(s) 1531, 1557
SaqAI TTAA 7 cut(s) 170, 263, 275, 627, 984, 1464, 1532
SatI GCNGC 3 cut(s) 126, 141, 364
Sau3AI GATC 6 cut(s) 14, 471, 475, 523, 888, 1158
SchI GAGTC 1 cut(s) 1587
SfaNI GCATC 3 cut(s) 335, 883, 896
SfuI TTCGAA 1 cut(s) 1256
Sse9I AATT 5 cut(s) 309, 412, 497, 778, 1547
SsiI CCGC 9 cut(s) 123, 126, 138, 141, 363, 373, 909, 941, 1136
SspMI CTAG 5 cut(s) 270, 401, 696, 711, 1061
TaaI ACNGT 4 cut(s) 193, 647, 881, 1291
TaiI ACGT 3 cut(s) 546, 586, 1233
TasI AATT 5 cut(s) 309, 412, 497, 778, 1547
TatI WGTACW 1 cut(s) 616
TauI GCSGC 3 cut(s) 128, 143, 366
TfiI GAWTC 6 cut(s) 119, 381, 750, 953, 1123, 1582
Tru1I TTAA 7 cut(s) 170, 263, 275, 627, 984, 1464, 1532
Tru9I TTAA 7 cut(s) 170, 263, 275, 627, 984, 1464, 1532
TscAI CASTG 2 cut(s) 106, 373
TseFI GTSAC 2 cut(s) 101, 1291
Tsp45I GTSAC 2 cut(s) 101, 1291
TspDTI ATGAA 8 cut(s) 37, 123, 545, 857, 992, 1067, 1370, 1575
TspGWI ACGGA 2 cut(s) 325, 393
TspRI CASTG 2 cut(s) 106, 373
XagI CCTNNNNNAGG 1 cut(s) 1100
XmiI GTMKAC 1 cut(s) 872
XmnI GAANNNNTTC 2 cut(s) 40, 830
XspI CTAG 5 cut(s) 270, 401, 696, 711, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.