Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014352

Physical Location & Seq

Genomic Coordinates Reverse (-)

517553 .. 519604

Gene Structure 2052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGAAGGTGAAAGATGGGTCAAGAGTGTATCGGGTGCCGAAGACGGCATTGCAGAGTGAAGAGAACGATGATATTATAAACGTTGAAATTCCATATGAAGAATTGTTTGAGGTCGTCGATAAGTTTGTAGTTAGGGTTTTGATTGACCGGGTACTTGGAGAGATATTAAACTTACCAAAATATGATCCCTCAGCTATGGCGTTAACCAAATCAACCCTCCATTTCCGCCGCTTTCTCTCTCCCATTCCGCCGCGAATTCTCAAACCCTACTCTTTCTCTTCAGCTTCAGAAGCCCATCTTCAAGAGACCGACACCCCAGACGACGATTCCCAAACTGCCCCTGTCCCCTACCTATCCGCCGACGAAACCCTAATCGCCGACAAATTCCACTCCCTCATCAAAGACCACCACCGCAACAACCCCAATCCTAATCCCAACCCCCATCCCCCGAACCCCACCTTCACAATCCCTGCTCTCTCGCAAGACTTCTCCCAAATCTCCGCCGTCCATTCTGTATCTCCCTCCGTCGTCCGCAGCGTGATCGAGAAGTGCGGTGGTGTCCGCCACGGCATCCCCTTGGTCCAGGCAGTTGCCTTCTTCAACTGGGCCACGGCCCGCGACGGGTTCGAGCAGAAATCGGAGCCCTACAACGAGATGGTCGACCTCGCTGGAAAGGTGAGGCAGTTCGATTTGGCTTGGCACGTGATCGACCTGATGAAAGCTCGGAATGTTGAGATTACGGTCGAGACTTTCTCGAATCTTGTCCGGCGATACATAAGGGCCGGATTGGCTGCGGAGGCGGTGCACGCGTTAAATCGTATGGAGGAGTACGGTTGCGAGCCTGATAGGATGGCTTTCTCGGTAGTGATTGGGATTCTGTGCAAGAAGAGAAGGGCCAGCGAAGCGCAGTCGTTTTTCGATAGCTTGAAGCATAAGTTTGAAGTTGATGTTGTACTGTACACTAGCTTGGTTAATGGCTGGTGTCGAGCTGGTAAGATCTTGGAGGCGGAGAGGGTATTTCGGGACATGAAGGTGGCCGGGATCATGCCGAACGTGTATACTTACAGCATCGTGATCGATGGTTTGTGCAGGTGCGGCCAAATTGCGCGTGCCCATGATGTTTTCGCTGAGATGATTGATGCCGGTTGCCAACCAAATTCGATTACTTTCAATAATCTGATGAGGGTTCATGTGAAGGCTGGCCGGACAGAGAAGGTGTTGCAAGTTTATACTCAGATGAAGAGGCTGGGATGCAATGCGGATGCCATTACTTATAATTTTCTTATAGAGTGTCACTGTAAGGACGAGAATCTTGAAGATGCAGTTAAGGTGCTCGATTTGATGGTTAAGAAAGGCTGCACCCCGAATGCATCGAGTTTCAATGCCATATTTCGGTGCATTGCGAAGTTGAAGGATGTGAATGGTGCTCACAGAATGTATGCTAAGATGAAGGAGTTGAAGTGCGAGTTGAACACGGTGACCTACAATACACTAATGCAGATGTTTGCCGAGTCTAAATCGACTCATATGGTGCTGAAGCTGAAGAGGGAAATGGATGAGAACGAAGTTGAACCCAACGTGAACACTTACAAGGTTTTGATCTCCATGTATCGTGGAATGGGGCATTGGAACAATGCCTACGGGTATTGCAGGGAGATGATTGAGGAGAAATGCTTGAAACCGAGTATGCCGGTTTATGAGATGGTTCTAGAACAGTTGAGGAAGGCAGGGCAGTTGAAGAAGCAGGAGGAATTGGTGGAGAAGATGGTTGATAGGGGCTTCGTTACACGGCCGTTGGCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

602

Amino Acids

68.32

Weight (kDa)

7.54

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	221 - 342	2.7e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	235 - 293	4.1e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	312 - 359	2.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	314 - 344	1e-09	PPR repeat
PPR_2	PF13041	316 - 364	7.9e-18	PPR repeat family
PPR_long	PF17177	318 - 414	4.6e-08	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	318 - 348	1e-06	PPR repeat
PPR_3	PF13812	338 - 398	4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	347 - 378	3.5e-11	PPR repeat
PPR	PF01535	353 - 383	1.7e-06	PPR repeat
PPR_2	PF13041	357 - 395	8.8e-10	PPR repeat family
PPR_2	PF13041	385 - 434	1.8e-13	PPR repeat family
TPR_24	PF23276	401 - 489	2.6e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	410 - 467	2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	417 - 449	1.4e-09	PPR repeat
PPR_2	PF13041	421 - 469	6e-13	PPR repeat family
PPR	PF01535	423 - 453	9.6e-07	PPR repeat
PPR_2	PF13041	455 - 503	9e-10	PPR repeat family
PPR_long	PF17177	468 - 592	1.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	481 - 538	3e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	491 - 536	1.1e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20300
fragaria_vesca	FvH4_2g37970
prunus_persica	Prupe.1G359600_v2.0.a1
pyrus_communis	pycom08g00640 pycom15g00550
rosa_chinensis	RchiOBHm_Chr6g0303651
rosa_laevigata	RLG00000011063
rosa_multiflora	Rmu_co8419065.1_g000001 Rmu_sc0013443.1_g000006 Rmu_ssc0000114.1_g000016
rosa_roxburghii	Rroxscaffold_7G00164520
rosa_rugosa	Rorug06G0323400
rosa_samantha	Rh6AG437700 Rh6BG465400 Rh6CG449800 Rh6DG436600
rosa_wichuraiana	Rw6G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	77, 1275
AarI	CACCTGC	1 cut(s)	1080
Acc36I	ACCTGC	1 cut(s)	1080
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	2 cut(s)	660, 1058
AccII	CGCG	4 cut(s)	253, 618, 809, 1108
AclI	AACGTT	1 cut(s)	81
AclWI	GGATC	2 cut(s)	179, 1049
AcoI	YGGCCR	4 cut(s)	1035, 1096, 1201, 1790
AcsI	RAATTY	4 cut(s)	87, 255, 383, 1156
AcuI	CTGAAG	4 cut(s)	264, 270, 1556, 1562
AcvI	CACGTG	1 cut(s)	703
AfaI	GTAC	4 cut(s)	153, 830, 954, 959
AfiI	CCNNNNNNNGG	2 cut(s)	621, 1392
AflIII	ACRYGT	2 cut(s)	807, 1053
AjnI	CCWGG	1 cut(s)	582
AjuI	GAANNNNNNNTTGG	2 cut(s)	1609, 1641
AluBI	AGCT	7 cut(s)	194, 284, 722, 924, 966, 989, 1540
AluI	AGCT	7 cut(s)	194, 284, 722, 924, 966, 989, 1540
Alw21I	GWGCWC	3 cut(s)	807, 1335, 1429
Alw26I	GTCTC	2 cut(s)	299, 740
Alw44I	GTGCAC	1 cut(s)	803
AlwI	GGATC	2 cut(s)	179, 1049
AoxI	GGCC	8 cut(s)	606, 612, 780, 894, 1035, 1096, 1201, 1790
ApaLI	GTGCAC	1 cut(s)	803
ApeKI	GCWGC	3 cut(s)	534, 791, 1356
ApoI	RAATTY	4 cut(s)	87, 255, 383, 1156
AspLEI	GCGC	2 cut(s)	907, 1108
AspS9I	GGNCC	5 cut(s)	580, 606, 613, 780, 894
AsuC2I	CCSGG	2 cut(s)	149, 1039
AsuHPI	GGTGA	3 cut(s)	19, 688, 1489
AvaII	GGWCC	1 cut(s)	580
BaeGI	GKGCMC	2 cut(s)	807, 1114
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	645
BbrPI	CACGTG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	3 cut(s)	807, 1335, 1429
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	546, 778, 1343
BccI	CCATC	9 cut(s)	8, 303, 450, 649, 844, 1073, 1336, 1696, 1759
BceAI	ACGGC	5 cut(s)	60, 488, 583, 627, 1777
BcgI	CGANNNNNNTGC	4 cut(s)	523, 557, 1057, 1091
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	2 cut(s)	149, 1039
BcoDI	GTCTC	2 cut(s)	299, 740
BfaI	CTAG	2 cut(s)	963, 1709
BfuAI	ACCTGC	1 cut(s)	1080
BglI	GCCNNNNNGGC	1 cut(s)	788
BglII	AGATCT	1 cut(s)	996
BisI	GCNGC	6 cut(s)	229, 251, 535, 792, 1096, 1357
BlsI	GCNGC	6 cut(s)	230, 252, 536, 793, 1097, 1358
Bme1390I	CCNGG	3 cut(s)	149, 584, 1039
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	5 cut(s)	580, 606, 613, 780, 894
BmiI	GGNNCC	2 cut(s)	36, 642
BmrFI	CCNGG	3 cut(s)	149, 584, 1039
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	7 cut(s)	579, 1077, 1129, 1241, 1252, 1309, 1379
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
Bpu10I	CCTNAGC	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	149, 1039
Bsa29I	ATCGAT	1 cut(s)	1077
BsaAI	YACGTR	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	565, 576, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	1445, 1475
Bsc4I	CCNNNNNNNGG	2 cut(s)	621, 1392
Bse118I	RCCGGY	2 cut(s)	1142, 1690
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	3 cut(s)	47, 1261, 1398
BseBI	CCWGG	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	1077
BseDI	CCNNGG	3 cut(s)	565, 576, 609
BseGI	GGATG	7 cut(s)	442, 570, 855, 1256, 1267, 1420, 1561
BseLI	CCNNNNNNNGG	2 cut(s)	621, 1392
BseMI	GCAATG	3 cut(s)	47, 1261, 1398
BseMII	CTCAG	3 cut(s)	204, 1119, 1247
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	2 cut(s)	839, 1679
BseSI	GKGCMC	2 cut(s)	807, 1114
BseX3I	CGGCCG	1 cut(s)	1790
BseXI	GCAGC	3 cut(s)	546, 778, 1343
BseYI	CCCAGC	1 cut(s)	1246
BsgI	GTGCAG	2 cut(s)	1108, 1342
Bsh1236I	CGCG	4 cut(s)	253, 618, 809, 1108
Bsh1285I	CGRYCG	2 cut(s)	744, 1793
BshFI	GGCC	8 cut(s)	608, 614, 782, 896, 1037, 1098, 1203, 1792
BshNI	GGYRCC	1 cut(s)	34
BshVI	ATCGAT	1 cut(s)	1077
BsiEI	CGRYCG	2 cut(s)	744, 1793
BsiHKAI	GWGCWC	3 cut(s)	807, 1335, 1429
BsiSI	CCGG	7 cut(s)	148, 766, 783, 1038, 1143, 1204, 1691
BslFI	GGGAC	2 cut(s)	329, 1037
BslI	CCNNNNNNNGG	2 cut(s)	621, 1392
BsmAI	GTCTC	2 cut(s)	299, 740
BsmFI	GGGAC	2 cut(s)	329, 1037
BsmI	GAATGC	1 cut(s)	1372
BsnI	GGCC	8 cut(s)	608, 614, 782, 896, 1037, 1098, 1203, 1792
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	5 cut(s)	645, 807, 1114, 1335, 1429
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
BspANI	GGCC	8 cut(s)	608, 614, 782, 896, 1037, 1098, 1203, 1792
BspCNI	CTCAG	3 cut(s)	203, 1120, 1246
BspDI	ATCGAT	1 cut(s)	1077
BspFNI	CGCG	4 cut(s)	253, 618, 809, 1108
BspLI	GGNNCC	2 cut(s)	36, 642
BspMI	ACCTGC	1 cut(s)	1080
BspPI	GGATC	2 cut(s)	179, 1049
BspT107I	GGYRCC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	299
BsrDI	GCAATG	3 cut(s)	47, 1261, 1398
BsrFI	RCCGGY	2 cut(s)	1142, 1690
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	2 cut(s)	1142, 1690
BssECI	CCNNGG	3 cut(s)	565, 576, 609
BssMI	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
BssNAI	GTATAC	1 cut(s)	1059
BssT1I	CCWWGG	1 cut(s)	576
Bst1107I	GTATAC	1 cut(s)	1059
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	6 cut(s)	742, 833, 957, 1298, 1477, 1716
Bst6I	CTCTTC	5 cut(s)	54, 283, 881, 1235, 1538
BstAUI	TGTACA	1 cut(s)	957
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	6 cut(s)	616, 807, 839, 898, 1110, 1201
BstDEI	CTNAG	4 cut(s)	190, 1128, 1233, 1443
BstDSI	CCRYGG	2 cut(s)	565, 609
BstEII	GGTNACC	1 cut(s)	1477
BstF5I	GGATG	7 cut(s)	442, 570, 855, 1256, 1267, 1420, 1561
BstFNI	CGCG	4 cut(s)	253, 618, 809, 1108
BstHHI	GCGC	2 cut(s)	907, 1108
BstKTI	GATC	7 cut(s)	187, 543, 708, 999, 1044, 1077, 1602
BstMAI	GTCTC	2 cut(s)	299, 740
BstMBI	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
BstMCI	CGRYCG	2 cut(s)	744, 1793
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 788, 797, 806, 902, 1095
BstNI	CCWGG	1 cut(s)	584
BstPI	GGTNACC	1 cut(s)	1477
BstSCI	CCNGG	3 cut(s)	147, 582, 1037
BstSLI	GKGCMC	2 cut(s)	807, 1114
BstUI	CGCG	4 cut(s)	253, 618, 809, 1108
BstV1I	GCAGC	3 cut(s)	546, 778, 1343
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	996
BstYI	RGATCY	1 cut(s)	996
BstZ17I	GTATAC	1 cut(s)	1059
BstZI	CGGCCG	1 cut(s)	1790
Bsu15I	ATCGAT	1 cut(s)	1077
BsuRI	GGCC	8 cut(s)	608, 614, 782, 896, 1037, 1098, 1203, 1792
BsuTUI	ATCGAT	1 cut(s)	1077
BtgI	CCRYGG	2 cut(s)	565, 609
BtsCI	GGATG	7 cut(s)	442, 570, 855, 1256, 1267, 1420, 1561
BtsI	GCAGTG	1 cut(s)	1806
BtsIMutI	CAGTG	2 cut(s)	1294, 1806
BveI	ACCTGC	1 cut(s)	1080
Cac8I	GCNNGC	6 cut(s)	616, 807, 839, 898, 1110, 1201
CfoI	GCGC	2 cut(s)	907, 1108
Cfr10I	RCCGGY	2 cut(s)	1142, 1690
Cfr13I	GGNCC	5 cut(s)	580, 606, 613, 780, 894
ClaI	ATCGAT	1 cut(s)	1077
Csp6I	GTAC	4 cut(s)	152, 829, 953, 958
CviAII	CATG	5 cut(s)	1027, 1045, 1115, 1190, 1606
CviQI	GTAC	4 cut(s)	152, 829, 953, 958
DdeI	CTNAG	4 cut(s)	190, 1128, 1233, 1443
DpnI	GATC	7 cut(s)	186, 542, 707, 998, 1043, 1076, 1601
DpnII	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
EaeI	YGGCCR	4 cut(s)	1035, 1096, 1201, 1790
EagI	CGGCCG	1 cut(s)	1790
Eam1104I	CTCTTC	5 cut(s)	54, 283, 881, 1235, 1538
EarI	CTCTTC	5 cut(s)	54, 283, 881, 1235, 1538
EciI	GGCGGA	6 cut(s)	215, 237, 346, 490, 551, 1022
EclXI	CGGCCG	1 cut(s)	1790
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	645
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	580
Eco52I	CGGCCG	1 cut(s)	1790
Eco57I	CTGAAG	4 cut(s)	264, 270, 1556, 1562
Eco72I	CACGTG	1 cut(s)	703
Eco91I	GGTNACC	1 cut(s)	1477
EcoO65I	GGTNACC	1 cut(s)	1477
EcoRI	GAATTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	1372
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	5 cut(s)	1030, 1048, 1118, 1193, 1609
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	329, 1037
FatI	CATG	5 cut(s)	1026, 1044, 1114, 1189, 1605
FauI	CCCGC	1 cut(s)	623
FauNDI	CATATG	2 cut(s)	94, 1527
FblI	GTMKAC	2 cut(s)	660, 1058
Fnu4HI	GCNGC	6 cut(s)	229, 251, 535, 792, 1096, 1357
FokI	GGATG	7 cut(s)	429, 557, 862, 1263, 1274, 1427, 1568
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	6 cut(s)	229, 251, 535, 792, 1096, 1357
FspBI	CTAG	2 cut(s)	963, 1709
GlaI	GCGC	2 cut(s)	906, 1107
GluI	GCNGC	6 cut(s)	229, 251, 535, 792, 1096, 1357
GsaI	CCCAGC	1 cut(s)	1250
HaeIII	GGCC	8 cut(s)	608, 614, 782, 896, 1037, 1098, 1203, 1792
HapII	CCGG	7 cut(s)	148, 766, 783, 1038, 1143, 1204, 1691
HhaI	GCGC	2 cut(s)	907, 1108
Hin1II	CATG	5 cut(s)	1030, 1048, 1118, 1193, 1609
Hin6I	GCGC	2 cut(s)	905, 1106
HinP1I	GCGC	2 cut(s)	905, 1106
HincII	GTYRAC	2 cut(s)	204, 661
HindII	GTYRAC	2 cut(s)	204, 661
HinfI	GANTC	6 cut(s)	326, 757, 874, 1309, 1511, 1522
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	7 cut(s)	148, 766, 783, 1038, 1143, 1204, 1691
HphI	GGTGA	3 cut(s)	19, 688, 1489
Hpy166II	GTNNAC	6 cut(s)	204, 661, 805, 960, 1059, 1582
Hpy188I	TCNGA	5 cut(s)	289, 640, 726, 1179, 1236
Hpy188III	TCNNGA	9 cut(s)	21, 302, 544, 745, 754, 1022, 1072, 1313, 1709
Hpy8I	GTNNAC	6 cut(s)	204, 661, 805, 960, 1059, 1582
Hpy99I	CGWCG	5 cut(s)	119, 326, 365, 530, 623
HpyAV	CCTTC	9 cut(s)	469, 604, 885, 1024, 1189, 1207, 1405, 1444, 1717
HpyCH4III	ACNGT	6 cut(s)	742, 833, 957, 1298, 1477, 1716
HpyCH4IV	ACGT	4 cut(s)	81, 702, 1053, 1578
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 788, 797, 806, 902, 1095
HpyF3I	CTNAG	4 cut(s)	190, 1128, 1233, 1443
HpySE526I	ACGT	4 cut(s)	81, 702, 1053, 1578
Hsp92II	CATG	5 cut(s)	1030, 1048, 1118, 1193, 1609
HspAI	GCGC	2 cut(s)	905, 1106
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	3 cut(s)	546, 778, 1343
LweI	GCATC	7 cut(s)	579, 1077, 1129, 1241, 1252, 1309, 1379
MaeI	CTAG	2 cut(s)	963, 1709
MaeII	ACGT	4 cut(s)	81, 702, 1053, 1578
MaeIII	GTNAC	3 cut(s)	1292, 1477, 1783
MalI	GATC	7 cut(s)	186, 542, 707, 998, 1043, 1076, 1601
MboI	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	5 cut(s)	645, 807, 1114, 1335, 1429
MluCI	AATT	8 cut(s)	87, 101, 255, 383, 1101, 1156, 1276, 1751
MluI	ACGCGT	1 cut(s)	807
MlyI	GAGTC	2 cut(s)	1516, 1520
Mph1103I	ATGCAT	1 cut(s)	1372
MseI	TTAA	6 cut(s)	167, 203, 812, 972, 1326, 1347
MslI	CAYNNNNRTG	1 cut(s)	1031
MspI	CCGG	7 cut(s)	148, 766, 783, 1038, 1143, 1204, 1691
MspR9I	CCNGG	3 cut(s)	149, 584, 1039
Mva1269I	GAATGC	1 cut(s)	1372
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	4 cut(s)	253, 618, 809, 1108
MwoI	GCNNNNNNNGC	6 cut(s)	290, 788, 797, 806, 902, 1095
NciI	CCSGG	2 cut(s)	149, 1039
NdeI	CATATG	2 cut(s)	94, 1527
NdeII	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
NlaIII	CATG	5 cut(s)	1030, 1048, 1118, 1193, 1609
NlaIV	GGNNCC	2 cut(s)	36, 642
NmeAIII	GCCGAG	1 cut(s)	1534
NmuCI	GTSAC	2 cut(s)	1292, 1477
NsiI	ATGCAT	1 cut(s)	1372
PaqCI	CACCTGC	1 cut(s)	1080
PcsI	WCGNNNNNNNCGW	2 cut(s)	534, 657
PctI	GAATGC	1 cut(s)	1372
PfeI	GAWTC	4 cut(s)	326, 757, 874, 1309
PkrI	GCNGC	6 cut(s)	230, 252, 536, 793, 1097, 1358
PleI	GAGTC	2 cut(s)	1516, 1519
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
PpsI	GAGTC	2 cut(s)	1516, 1519
Ppu21I	YACGTR	1 cut(s)	703
PsiI	TTATAA	2 cut(s)	77, 1275
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	582
PspCI	CACGTG	1 cut(s)	703
PspEI	GGTNACC	1 cut(s)	1477
PspFI	CCCAGC	1 cut(s)	1246
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	36, 642
PspPI	GGNCC	5 cut(s)	580, 606, 613, 780, 894
PsrI	GAACNNNNNNTAC	2 cut(s)	1622, 1654
PsuI	RGATCY	1 cut(s)	996
RsaI	GTAC	4 cut(s)	153, 830, 954, 959
RsaNI	GTAC	4 cut(s)	152, 829, 953, 958
RseI	CAYNNNNRTG	1 cut(s)	1031
SalI	GTCGAC	1 cut(s)	659
SaqAI	TTAA	6 cut(s)	167, 203, 812, 972, 1326, 1347
SatI	GCNGC	6 cut(s)	229, 251, 535, 792, 1096, 1357
Sau3AI	GATC	7 cut(s)	184, 540, 705, 996, 1041, 1074, 1599
Sau96I	GGNCC	5 cut(s)	580, 606, 613, 780, 894
SchI	GAGTC	2 cut(s)	1516, 1520
ScrFI	CCNGG	3 cut(s)	149, 584, 1039
SduI	GDGCHC	5 cut(s)	645, 807, 1114, 1335, 1429
SfaNI	GCATC	7 cut(s)	579, 1077, 1129, 1241, 1252, 1309, 1379
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	1031
Sse9I	AATT	8 cut(s)	87, 101, 255, 383, 1101, 1156, 1276, 1751
SspMI	CTAG	2 cut(s)	963, 1709
StyD4I	CCNGG	3 cut(s)	147, 582, 1037
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	6 cut(s)	742, 833, 957, 1298, 1477, 1716
TaiI	ACGT	4 cut(s)	84, 705, 1056, 1581
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	8 cut(s)	87, 101, 255, 383, 1101, 1156, 1276, 1751
TatI	WGTACW	2 cut(s)	952, 957
TauI	GCSGC	3 cut(s)	231, 253, 1098
TfiI	GAWTC	4 cut(s)	326, 757, 874, 1309
Tru1I	TTAA	6 cut(s)	167, 203, 812, 972, 1326, 1347
Tru9I	TTAA	6 cut(s)	167, 203, 812, 972, 1326, 1347
TscAI	CASTG	2 cut(s)	1301, 1806
TseFI	GTSAC	2 cut(s)	1292, 1477
TseI	GCWGC	3 cut(s)	534, 791, 1356
Tsp45I	GTSAC	2 cut(s)	1292, 1477
TspDTI	ATGAA	7 cut(s)	17, 111, 731, 1043, 1178, 1253, 1463
TspGWI	ACGGA	1 cut(s)	514
TspRI	CASTG	2 cut(s)	1301, 1806
VneI	GTGCAC	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	580
XapI	RAATTY	4 cut(s)	87, 255, 383, 1156
XbaI	TCTAGA	1 cut(s)	1708
XmiI	GTMKAC	2 cut(s)	660, 1058
XspI	CTAG	2 cut(s)	963, 1709
Zsp2I	ATGCAT	1 cut(s)	1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.