Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013443.1

Orthogroup ID

OG0014352

Physical Location & Seq

Genomic Coordinates Reverse (-)

16542 .. 17006

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013443.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggtgaagaaaggctgcagccctaatgcatcgactttcaatcccatatttcggtgcattgcgaagctgaaggatgtgaatggtgctcacaggatgtacactaagatgaaggatttggattgcaaggcgaacacagtgacctacaatgtgttaatgcagatgtttgcggagtcaaagtcgactgatatggtgctcaagctgaagaaggagatggatgagaatgaagtggagcctaatgtgaatacgtataaggtcttaatctctatgttttgtgcaatggggcattggaacaacgcttacaggttctgtagggagatgattgaggagaaatgcttaaaaccaagtatgccggtttatgagatggttctgaagcagttgaggaatgcaggacagctgaagaagcatgaggaattggtggaaaaaatggttgacaggggcttcgtcactcgcccattagcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

154

Amino Acids

17.85

Weight (kDa)

9.11

Isoelectric Point (pI)

25.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20300
fragaria_vesca	FvH4_2g37970
prunus_persica	Prupe.1G359600_v2.0.a1
pyrus_communis	pycom08g00640 pycom15g00550
rosa_chinensis	RchiOBHm_Chr6g0303651
rosa_laevigata	RLG00000011063
rosa_multiflora	Rmu_co8419065.1_g000001 Rmu_sc0013443.1_g000006 Rmu_ssc0000114.1_g000016
rosa_roxburghii	Rroxscaffold_7G00164520
rosa_rugosa	Rorug06G0323400
rosa_samantha	Rh6AG437700 Rh6BG465400 Rh6CG449800 Rh6DG436600
rosa_wichuraiana	Rw6G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	179
AciI	CCGC	1 cut(s)	167
AcuI	CTGAAG	4 cut(s)	89, 221, 389, 416
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	40
AluBI	AGCT	3 cut(s)	67, 199, 394
AluI	AGCT	3 cut(s)	67, 199, 394
Alw21I	GWGCWC	2 cut(s)	88, 195
AlwNI	CAGNNNCTG	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	15, 18
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
AsuHPI	GGTGA	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	88, 195
BbvI	GCAGC	2 cut(s)	2, 30
BccI	CCATC	2 cut(s)	205, 355
BfmI	CTRYAG	2 cut(s)	16, 307
BisI	GCNGC	2 cut(s)	16, 19
BlsI	GCNGC	2 cut(s)	17, 20
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	349
Bse3DI	GCAATG	2 cut(s)	57, 282
BseGI	GGATG	3 cut(s)	79, 99, 220
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	2 cut(s)	57, 282
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	2, 30
BsiHKAI	GWGCWC	2 cut(s)	88, 195
BsiSI	CCGG	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	88, 195
Bsp1407I	TGTACA	1 cut(s)	96
BspACI	CCGC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	57, 282
BsrFI	RCCGGY	1 cut(s)	349
BsrGI	TGTACA	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	136
BstAUI	TGTACA	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	79, 99, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	400
BstSFI	CTRYAG	2 cut(s)	16, 307
BstSNI	TACGTA	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	2, 30
BtsCI	GGATG	3 cut(s)	79, 99, 220
BtsIMutI	CAGTG	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	7 cut(s)	15, 21, 67, 199, 232, 394, 438
CviKI_1	RGCY	7 cut(s)	15, 21, 67, 199, 232, 394, 438
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	102
Eco105I	TACGTA	1 cut(s)	246
Eco57I	CTGAAG	4 cut(s)	89, 221, 389, 416
EcoT22I	ATGCAT	1 cut(s)	31
FaeI	CATG	1 cut(s)	407
FaiI	YATR	7 cut(s)	47, 188, 249, 266, 347, 357, 405
FatI	CATG	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	16, 19
FokI	GGATG	3 cut(s)	86, 106, 227
Fsp4HI	GCNGC	2 cut(s)	16, 19
GluI	GCNGC	2 cut(s)	16, 19
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	1 cut(s)	407
HincII	GTYRAC	2 cut(s)	180, 430
HindII	GTYRAC	2 cut(s)	180, 430
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	99, 180, 430
Hpy188I	TCNGA	1 cut(s)	369
Hpy8I	GTNNAC	3 cut(s)	99, 180, 430
HpyAV	CCTTC	3 cut(s)	64, 103, 199
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	7 cut(s)	18, 29, 57, 123, 157, 275, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	400
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	5 cut(s)	76, 286, 363, 372, 418
Lsp1109I	GCAGC	2 cut(s)	2, 30
LweI	GCATC	1 cut(s)	38
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	136, 442
MboII	GAAGA	3 cut(s)	19, 214, 409
MhlI	GDGCHC	2 cut(s)	88, 195
MluCI	AATT	1 cut(s)	410
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	3 cut(s)	316, 372, 400
Mph1103I	ATGCAT	1 cut(s)	31
MseI	TTAA	4 cut(s)	152, 257, 335, 463
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	400
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	136, 442
NsiI	ATGCAT	1 cut(s)	31
PctI	GAATGC	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	17, 20
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	231
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
PstI	CTGCAG	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	104
SalI	GTCGAC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	152, 257, 335, 463
SatI	GCNGC	2 cut(s)	16, 19
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	88, 195
SetI	ASST	7 cut(s)	69, 143, 201, 248, 255, 305, 396
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	2 cut(s)	16, 307
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SnaBI	TACGTA	1 cut(s)	246
Sse9I	AATT	1 cut(s)	410
SsiI	CCGC	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	32, 179
TasI	AATT	1 cut(s)	410
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	4 cut(s)	152, 257, 335, 463
Tru9I	TTAA	4 cut(s)	152, 257, 335, 463
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	136, 442
TseI	GCWGC	2 cut(s)	15, 18
Tsp45I	GTSAC	2 cut(s)	136, 442
TspDTI	ATGAA	2 cut(s)	122, 237
TspRI	CASTG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.