Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0014352

Physical Location & Seq

Genomic Coordinates Reverse (-)

106302 .. 107900

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000114.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

atggccgccttaaccaaatcaaacctccctctccgccgctttctctctcctctgtctcaacgaattctcaatccctcttctctctcttcagctccagagcctcatctccaagacgacgacgacacttcccaaactgcccccaacttagccaccgacgaaaccctaatcgccgacacattccactccctaatcaaagaccaccaccgcaacaaccctaaccccaatcccaaccccactcctccaaaccctacctacacaatcccttctctctcctccgacttctcccaactctccgccgccgcctccatttctccggcggtcttccgccgcgtcatcgagaaatgcggcggcgtccgccacggcatccccgtcctccaggccctcgccttcttcaactgggccacgtcacgcgacggcttcgagcacactccggagccgtacaacgaaatggtcgacctcgccggaaaggtaaggcagtttgatttggcttggcacgtgatcgactcgatgaaagctcggaatgttgaaattacggtagagacattctcgattcttgtgcgccggtacgtaagggccggattggctgcggaggcggtgcacgcgtttaaccgtatggaggagtatggcgtcaatcctgataggattgctttctcggttgtgattgggattctctgtaagaagagaagggcaagtgaagcgcaggcgtttttcgatagcttgaagcataaattcgaggctgatgtgattctgtacactagcttggttaatggatggtgtagagctgggaatatatcagaagcagagagggtgtttagggagatgaaggcggcggggattgagccgaatgtatatagttacagcattgtgatagatgcattgtgtaggtgtggacagattactcgcgctcatgatgttttcgcagagatgattgatgcaggttgcaatccgaactcaatcacttttaacaatctaatgagagttcatgtgaaggctggacgaactgaaaaggtgttgcaggtttataatcagatgaagaggttgggatgcaatgcggatttgattacttacaattttcttatagagtgtcgttgtaaggatgagaatgttgaagaggctgttaaggtgctgaatttgatggtgaagaaaggctgcagccctaatgcatcgactttcaatcccatatttcggtgcattgcgaagctgaaggatgtgaatggtgctcacaggatgtacactaagatgaaggatttggattgcaaggcgaacacagtgacctacaatgtgttaatgcagatgtttgcggagtcaaagtcgactgatatggtgctcaagctgaagaaggagatggatgagaatgaagtggagcctaatgtgaatacgtataaggtcttaatctctatgttttgtgcaatggggcattggaacaacgcttacaggttctgtagggagatgattgaggagaaatgcttaaaaccaagtatgccggtttatgagatggttctgaagcagttgaggaatgcaggacagctgaagaagcatgaggaattggtggaaaaaatggttgacaggggcttcgtcactcgcccattagcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

532

Amino Acids

60.1

Weight (kDa)

8.39

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20300
fragaria_vesca	FvH4_2g37970
prunus_persica	Prupe.1G359600_v2.0.a1
pyrus_communis	pycom08g00640 pycom15g00550
rosa_chinensis	RchiOBHm_Chr6g0303651
rosa_laevigata	RLG00000011063
rosa_multiflora	Rmu_co8419065.1_g000001 Rmu_sc0013443.1_g000006 Rmu_ssc0000114.1_g000016
rosa_roxburghii	Rroxscaffold_7G00164520
rosa_rugosa	Rorug06G0323400
rosa_samantha	Rh6AG437700 Rh6BG465400 Rh6CG449800 Rh6DG436600
rosa_wichuraiana	Rw6G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1023
Acc36I	ACCTGC	2 cut(s)	926, 1006
AccI	GTMKAC	2 cut(s)	453, 1313
AccII	CGCG	4 cut(s)	330, 411, 602, 903
AccIII	TCCGGA	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	63, 728, 1129
AcuI	CTGAAG	5 cut(s)	72, 1223, 1355, 1523, 1550
AcvI	CACGTG	1 cut(s)	496
AcyI	GRCGYC	2 cut(s)	351, 627
AfaI	GTAC	4 cut(s)	440, 566, 752, 1232
AfiI	CCNNNNNNNGG	2 cut(s)	616, 1185
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	5 cut(s)	394, 527, 721, 1109, 1174
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	8 cut(s)	92, 515, 717, 759, 782, 1201, 1333, 1528
AluI	AGCT	8 cut(s)	92, 515, 717, 759, 782, 1201, 1333, 1528
Alw21I	GWGCWC	4 cut(s)	426, 600, 1222, 1329
Alw26I	GTCTC	2 cut(s)	60, 533
Alw44I	GTGCAC	1 cut(s)	596
AlwNI	CAGNNNCTG	1 cut(s)	1440
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	4 cut(s)	3, 378, 399, 573
ApaLI	GTGCAC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	584, 1149, 1152
ApoI	RAATTY	3 cut(s)	63, 728, 1129
ArsI	GACNNNNNNTTYG	2 cut(s)	1556, 1588
AspLEI	GCGC	3 cut(s)	561, 700, 905
AspS9I	GGNCC	3 cut(s)	379, 399, 573
AsuHPI	GGTGA	1 cut(s)	1150
BaeGI	GKGCMC	1 cut(s)	600
BbrPI	CACGTG	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	4 cut(s)	426, 600, 1222, 1329
BbvI	GCAGC	3 cut(s)	571, 1136, 1164
BccI	CCATC	4 cut(s)	765, 1129, 1339, 1489
BceAI	ACGGC	3 cut(s)	376, 421, 430
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	60, 533
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	2 cut(s)	1150, 1441
BfuAI	ACCTGC	2 cut(s)	926, 1006
BglI	GCCNNNNNGGC	1 cut(s)	581
Bme1390I	CCNGG	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	3 cut(s)	379, 399, 573
BmiI	GGNNCC	2 cut(s)	435, 1365
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	5 cut(s)	372, 862, 922, 1034, 1172
BmuI	ACTGGG	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	530, 562
BpmI	CTGGAG	2 cut(s)	78, 359
BpuEI	CTTGAG	1 cut(s)	1313
BsaAI	YACGTR	3 cut(s)	496, 568, 1380
BsaHI	GRCGYC	2 cut(s)	351, 627
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	1295, 1325
Bsc4I	CCNNNNNNNGG	2 cut(s)	616, 1185
Bse118I	RCCGGY	2 cut(s)	561, 1483
Bse1I	ACTGG	1 cut(s)	401
Bse3DI	GCAATG	3 cut(s)	1054, 1191, 1416
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	7 cut(s)	363, 776, 1049, 1102, 1213, 1233, 1354
BseLI	CCNNNNNNNGG	2 cut(s)	616, 1185
BseMI	GCAATG	3 cut(s)	1054, 1191, 1416
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	5 cut(s)	39, 228, 262, 632, 1472
BseSI	GKGCMC	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	571, 1136, 1164
BseYI	CCCAGC	1 cut(s)	782
Bsh1236I	CGCG	4 cut(s)	330, 411, 602, 903
BshFI	GGCC	4 cut(s)	5, 380, 401, 575
BsiHKAI	GWGCWC	4 cut(s)	426, 600, 1222, 1329
BsiSI	CCGG	6 cut(s)	314, 431, 462, 562, 576, 1484
BslI	CCNNNNNNNGG	2 cut(s)	616, 1185
BsmAI	GTCTC	2 cut(s)	60, 533
BsmI	GAATGC	1 cut(s)	1522
BsnI	GGCC	4 cut(s)	5, 380, 401, 575
Bsp1286I	GDGCHC	4 cut(s)	426, 600, 1222, 1329
Bsp13I	TCCGGA	1 cut(s)	430
Bsp1407I	TGTACA	2 cut(s)	750, 1230
Bsp143I	GATC	1 cut(s)	498
BspANI	GGCC	4 cut(s)	5, 380, 401, 575
BspEI	TCCGGA	1 cut(s)	430
BspFNI	CGCG	4 cut(s)	330, 411, 602, 903
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	2 cut(s)	435, 1365
BspMAI	CTGCAG	1 cut(s)	1154
BspMI	ACCTGC	2 cut(s)	926, 1006
BsrDI	GCAATG	3 cut(s)	1054, 1191, 1416
BsrFI	RCCGGY	2 cut(s)	561, 1483
BsrGI	TGTACA	2 cut(s)	750, 1230
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	2 cut(s)	561, 1483
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	1 cut(s)	498
BssNI	GRCGYC	2 cut(s)	351, 627
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	535, 611, 1270
Bst6I	CTCTTC	5 cut(s)	82, 91, 674, 1028, 1104
BstACI	GRCGYC	2 cut(s)	351, 627
BstAUI	TGTACA	2 cut(s)	750, 1230
BstBAI	YACGTR	3 cut(s)	496, 568, 1380
BstC8I	GCNNGC	2 cut(s)	600, 702
BstDEI	CTNAG	2 cut(s)	145, 1236
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	7 cut(s)	363, 776, 1049, 1102, 1213, 1233, 1354
BstFNI	CGCG	4 cut(s)	330, 411, 602, 903
BstHHI	GCGC	3 cut(s)	561, 700, 905
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	2 cut(s)	60, 533
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	6 cut(s)	354, 581, 590, 599, 695, 1534
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	2 cut(s)	1150, 1441
BstSLI	GKGCMC	1 cut(s)	600
BstSNI	TACGTA	2 cut(s)	568, 1380
BstUI	CGCG	4 cut(s)	330, 411, 602, 903
BstV1I	GCAGC	3 cut(s)	571, 1136, 1164
BstV2I	GAAGAC	1 cut(s)	313
BsuRI	GGCC	4 cut(s)	5, 380, 401, 575
BtgI	CCRYGG	1 cut(s)	358
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	7 cut(s)	363, 776, 1049, 1102, 1213, 1233, 1354
BtsIMutI	CAGTG	1 cut(s)	1275
BveI	ACCTGC	2 cut(s)	926, 1006
Cac8I	GCNNGC	2 cut(s)	600, 702
CaiI	CAGNNNCTG	1 cut(s)	1440
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	3 cut(s)	561, 700, 905
Cfr10I	RCCGGY	2 cut(s)	561, 1483
Cfr13I	GGNCC	3 cut(s)	379, 399, 573
CseI	GACGC	3 cut(s)	319, 340, 616
Csp6I	GTAC	4 cut(s)	439, 565, 751, 1231
CviAII	CATG	3 cut(s)	908, 983, 1538
CviQI	GTAC	4 cut(s)	439, 565, 751, 1231
DdeI	CTNAG	2 cut(s)	145, 1236
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	82, 91, 674, 1028, 1104
EarI	CTCTTC	5 cut(s)	82, 91, 674, 1028, 1104
EciI	GGCGGA	4 cut(s)	23, 283, 314, 344
Eco105I	TACGTA	2 cut(s)	568, 1380
Eco57I	CTGAAG	5 cut(s)	72, 1223, 1355, 1523, 1550
Eco72I	CACGTG	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	375
EcoT22I	ATGCAT	2 cut(s)	877, 1165
FaeI	CATG	3 cut(s)	911, 986, 1541
FatI	CATG	3 cut(s)	907, 982, 1537
FauI	CCCGC	1 cut(s)	823
FblI	GTMKAC	2 cut(s)	453, 1313
FokI	GGATG	7 cut(s)	350, 783, 1056, 1109, 1220, 1240, 1361
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	3 cut(s)	560, 699, 904
GsaI	CCCAGC	1 cut(s)	786
GsuI	CTGGAG	2 cut(s)	78, 359
HaeIII	GGCC	4 cut(s)	5, 380, 401, 575
HapII	CCGG	6 cut(s)	314, 431, 462, 562, 576, 1484
HgaI	GACGC	3 cut(s)	319, 340, 616
HhaI	GCGC	3 cut(s)	561, 700, 905
Hin1I	GRCGYC	2 cut(s)	351, 627
Hin1II	CATG	3 cut(s)	911, 986, 1541
Hin6I	GCGC	3 cut(s)	559, 698, 903
HinP1I	GCGC	3 cut(s)	559, 698, 903
HincII	GTYRAC	3 cut(s)	454, 1314, 1564
HindII	GTYRAC	3 cut(s)	454, 1314, 1564
HinfI	GANTC	5 cut(s)	503, 550, 667, 745, 1304
HpaII	CCGG	6 cut(s)	314, 431, 462, 562, 576, 1484
HphI	GGTGA	1 cut(s)	1150
Hpy166II	GTNNAC	7 cut(s)	454, 598, 753, 890, 1233, 1314, 1564
Hpy188I	TCNGA	6 cut(s)	277, 519, 796, 948, 1029, 1503
Hpy188III	TCNNGA	6 cut(s)	95, 337, 431, 547, 635, 908
Hpy8I	GTNNAC	7 cut(s)	454, 598, 753, 890, 1233, 1314, 1564
Hpy99I	CGWCG	4 cut(s)	119, 122, 158, 416
HpyAV	CCTTC	8 cut(s)	273, 397, 678, 817, 982, 1198, 1237, 1333
HpyCH4III	ACNGT	3 cut(s)	535, 611, 1270
HpyCH4IV	ACGT	4 cut(s)	404, 495, 567, 1379
HpyF10VI	GCNNNNNNNGC	6 cut(s)	354, 581, 590, 599, 695, 1534
HpyF3I	CTNAG	2 cut(s)	145, 1236
HpySE526I	ACGT	4 cut(s)	404, 495, 567, 1379
Hsp92I	GRCGYC	2 cut(s)	351, 627
Hsp92II	CATG	3 cut(s)	911, 986, 1541
HspAI	GCGC	3 cut(s)	559, 698, 903
Kpn2I	TCCGGA	1 cut(s)	430
Kzo9I	GATC	1 cut(s)	498
LmnI	GCTCC	3 cut(s)	97, 433, 1363
Lsp1109I	GCAGC	3 cut(s)	571, 1136, 1164
LweI	GCATC	5 cut(s)	372, 862, 922, 1034, 1172
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	4 cut(s)	404, 495, 567, 1379
MaeIII	GTNAC	4 cut(s)	405, 854, 1270, 1576
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MhlI	GDGCHC	4 cut(s)	426, 600, 1222, 1329
MluCI	AATT	6 cut(s)	63, 528, 728, 1069, 1129, 1544
MluI	ACGCGT	1 cut(s)	600
MlyI	GAGTC	2 cut(s)	497, 1313
MmeI	TCCRAC	1 cut(s)	300
Mph1103I	ATGCAT	2 cut(s)	877, 1165
MroI	TCCGGA	1 cut(s)	430
MseI	TTAA	9 cut(s)	11, 606, 765, 963, 1119, 1286, 1391, 1469, 1597
MslI	CAYNNNNRTG	1 cut(s)	1238
MspA1I	CMGCKG	1 cut(s)	1528
MspI	CCGG	6 cut(s)	314, 431, 462, 562, 576, 1484
MspR9I	CCNGG	1 cut(s)	377
Mva1269I	GAATGC	1 cut(s)	1522
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	4 cut(s)	330, 411, 602, 903
MwoI	GCNNNNNNNGC	6 cut(s)	354, 581, 590, 599, 695, 1534
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	3 cut(s)	911, 986, 1541
NlaIV	GGNNCC	2 cut(s)	435, 1365
NmuCI	GTSAC	3 cut(s)	405, 1270, 1576
NsiI	ATGCAT	2 cut(s)	877, 1165
PagI	TCATGA	1 cut(s)	907
PcsI	WCGNNNNNNNCGW	2 cut(s)	366, 450
PctI	GAATGC	1 cut(s)	1522
PfeI	GAWTC	3 cut(s)	550, 667, 745
PleI	GAGTC	2 cut(s)	497, 1312
PmaCI	CACGTG	1 cut(s)	496
PmlI	CACGTG	1 cut(s)	496
PpsI	GAGTC	2 cut(s)	497, 1312
Ppu21I	YACGTR	3 cut(s)	496, 568, 1380
PsiI	TTATAA	1 cut(s)	1023
Psp6I	CCWGG	1 cut(s)	375
PspCI	CACGTG	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	782
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	435, 1365
PspPI	GGNCC	3 cut(s)	379, 399, 573
PsrI	GAACNNNNNNTAC	2 cut(s)	1415, 1447
PstI	CTGCAG	1 cut(s)	1154
PstNI	CAGNNNCTG	1 cut(s)	1440
PvuII	CAGCTG	1 cut(s)	1528
RsaI	GTAC	4 cut(s)	440, 566, 752, 1232
RsaNI	GTAC	4 cut(s)	439, 565, 751, 1231
RseI	CAYNNNNRTG	1 cut(s)	1238
SalI	GTCGAC	2 cut(s)	452, 1312
SaqAI	TTAA	9 cut(s)	11, 606, 765, 963, 1119, 1286, 1391, 1469, 1597
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	3 cut(s)	379, 399, 573
SchI	GAGTC	2 cut(s)	497, 1313
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	4 cut(s)	426, 600, 1222, 1329
SfaNI	GCATC	5 cut(s)	372, 862, 922, 1034, 1172
SfcI	CTRYAG	2 cut(s)	1150, 1441
SmiMI	CAYNNNNRTG	1 cut(s)	1238
SmlI	CTYRAG	1 cut(s)	1328
SmoI	CTYRAG	1 cut(s)	1328
SnaBI	TACGTA	2 cut(s)	568, 1380
Sse9I	AATT	6 cut(s)	63, 528, 728, 1069, 1129, 1544
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	535, 611, 1270
TaiI	ACGT	4 cut(s)	407, 498, 570, 1382
TasI	AATT	6 cut(s)	63, 528, 728, 1069, 1129, 1544
TatI	WGTACW	2 cut(s)	750, 1230
TauI	GCSGC	8 cut(s)	8, 39, 299, 302, 330, 348, 351, 830
TfiI	GAWTC	3 cut(s)	550, 667, 745
Tru1I	TTAA	9 cut(s)	11, 606, 765, 963, 1119, 1286, 1391, 1469, 1597
Tru9I	TTAA	9 cut(s)	11, 606, 765, 963, 1119, 1286, 1391, 1469, 1597
TscAI	CASTG	1 cut(s)	1275
TseFI	GTSAC	3 cut(s)	405, 1270, 1576
TseI	GCWGC	3 cut(s)	584, 1149, 1152
Tsp45I	GTSAC	3 cut(s)	405, 1270, 1576
TspDTI	ATGAA	6 cut(s)	524, 836, 971, 1046, 1256, 1371
TspRI	CASTG	1 cut(s)	1275
VneI	GTGCAC	1 cut(s)	596
XapI	RAATTY	3 cut(s)	63, 728, 1129
XmiI	GTMKAC	2 cut(s)	453, 1313
XspI	CTAG	1 cut(s)	756
Zsp2I	ATGCAT	2 cut(s)	877, 1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.