Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419065.1

Orthogroup ID

OG0014352

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1270

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419065.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1270 bp

cgtcatcgagaaatgcggcggcgtccgccacggcatccccgtcctccaggccctcgccttcttcaactgggccacgtcacgcgacggcttcgagcacactccggagccgtacaacgaaatggtcgacctcgccggaaaggtaaggcagtttgatttggcttggcacgtgatcgactcgatgaaagctcggaatgttgaaattacggtagagacattctcgattcttgtgcgccggtacgtaagggccggattggctgcggaggcggtgcacgcgtttaaccgtatggaggagtatggcgtcaatcctgataggattgctttctcggttgtgattgggattctctgtaagaagagaagggcaagtgaagcgcaggcgtttttcgatagcttgaagcataaattcgaggctgatgtgattctgtacactagcttggttaatggatggtgtagagctgggaatatatcagaagcagagagggtgtttagggagatgaaggcggcggggattgagccgaatgtatatagttacagcattgtgatagatgcattgtgtaggtgtggacagattactcgcgctcatgatgttttcgcagagatgattgatgcaggttgcaatccgaactcaatcacttttaacaatctaatgagagttcatgtgaaggctggacgaactgaaaaggtgttgcaggtttataatcagatgaagaggttgggatgcaatgcggatttgattacttacaattttcttatagagtgtcgttgtaaggatgagaatgttgaagaggctgttaaggtgctgaatttgatggtgaagaaaggctgcagccctaatgcatcgactttcaatcccatatttcggtgcattgcgaagctgaaggatgtgaatggtgctcacaggatgtacactaagatgaaggatttggattgcaaggcgaacacagtgacctacaatgtgttaatgcagatgtttgcggagtcaaagtcgactgatatggtgctcaagctgaagaaggagatggatgagaatgaagtggagcctaatgtgaatacgtataaggtcttaatctctatgttttgtgcaatggggcattggaacaacgcttacaggttctgtagggagatgattgaggagaaatgcttaaaaccaagtatgccggtttatgagatggttctgaagcagttgaggaatgcaggacagctgaagaagcatgaggaattggtggaaaaaatggttgacaggggcttcgtcactcgcccattagcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

422

Amino Acids

48.15

Weight (kDa)

8.61

Isoelectric Point (pI)

31.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20300
fragaria_vesca	FvH4_2g37970
prunus_persica	Prupe.1G359600_v2.0.a1
pyrus_communis	pycom08g00640 pycom15g00550
rosa_chinensis	RchiOBHm_Chr6g0303651
rosa_laevigata	RLG00000011063
rosa_multiflora	Rmu_co8419065.1_g000001 Rmu_sc0013443.1_g000006 Rmu_ssc0000114.1_g000016
rosa_roxburghii	Rroxscaffold_7G00164520
rosa_rugosa	Rorug06G0323400
rosa_samantha	Rh6AG437700 Rh6BG465400 Rh6CG449800 Rh6DG436600
rosa_wichuraiana	Rw6G037890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	694
Acc36I	ACCTGC	2 cut(s)	597, 677
AccI	GTMKAC	2 cut(s)	124, 984
AccII	CGCG	3 cut(s)	82, 273, 574
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	9 cut(s)	16, 19, 26, 258, 264, 498, 501, 723, 972
AcsI	RAATTY	2 cut(s)	399, 800
AcuI	CTGAAG	4 cut(s)	894, 1026, 1194, 1221
AcvI	CACGTG	1 cut(s)	167
AcyI	GRCGYC	2 cut(s)	22, 298
AfaI	GTAC	4 cut(s)	111, 237, 423, 903
AfiI	CCNNNNNNNGG	2 cut(s)	287, 856
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	5 cut(s)	65, 198, 392, 780, 845
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	7 cut(s)	186, 388, 430, 453, 872, 1004, 1199
AluI	AGCT	7 cut(s)	186, 388, 430, 453, 872, 1004, 1199
Alw21I	GWGCWC	4 cut(s)	97, 271, 893, 1000
Alw26I	GTCTC	1 cut(s)	204
Alw44I	GTGCAC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	1111
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	3 cut(s)	49, 70, 244
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	255, 820, 823
ApoI	RAATTY	2 cut(s)	399, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	1227, 1259
AspLEI	GCGC	3 cut(s)	232, 371, 576
AspS9I	GGNCC	3 cut(s)	50, 70, 244
AsuHPI	GGTGA	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	271
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	4 cut(s)	97, 271, 893, 1000
BbvI	GCAGC	3 cut(s)	242, 807, 835
BccI	CCATC	4 cut(s)	436, 800, 1010, 1160
BceAI	ACGGC	3 cut(s)	47, 92, 101
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	427
BfmI	CTRYAG	2 cut(s)	821, 1112
BfuAI	ACCTGC	2 cut(s)	597, 677
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	6 cut(s)	17, 20, 256, 499, 821, 824
BlsI	GCNGC	6 cut(s)	18, 21, 257, 500, 822, 825
Bme1390I	CCNGG	1 cut(s)	48
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	50, 70, 244
BmiI	GGNNCC	2 cut(s)	106, 1036
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	5 cut(s)	43, 533, 593, 705, 843
BmuI	ACTGGG	1 cut(s)	77
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	984
BsaAI	YACGTR	3 cut(s)	167, 239, 1051
BsaHI	GRCGYC	2 cut(s)	22, 298
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 856
Bse118I	RCCGGY	2 cut(s)	232, 1154
Bse1I	ACTGG	1 cut(s)	72
Bse3DI	GCAATG	3 cut(s)	725, 862, 1087
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	7 cut(s)	34, 447, 720, 773, 884, 904, 1025
BseLI	CCNNNNNNNGG	2 cut(s)	287, 856
BseMI	GCAATG	3 cut(s)	725, 862, 1087
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	303, 1143
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	242, 807, 835
BseYI	CCCAGC	1 cut(s)	453
Bsh1236I	CGCG	3 cut(s)	82, 273, 574
BshFI	GGCC	3 cut(s)	51, 72, 246
BsiHKAI	GWGCWC	4 cut(s)	97, 271, 893, 1000
BsiSI	CCGG	5 cut(s)	102, 133, 233, 247, 1155
BslI	CCNNNNNNNGG	2 cut(s)	287, 856
BsmAI	GTCTC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	1193
BsnI	GGCC	3 cut(s)	51, 72, 246
Bsp1286I	GDGCHC	4 cut(s)	97, 271, 893, 1000
Bsp13I	TCCGGA	1 cut(s)	101
Bsp1407I	TGTACA	2 cut(s)	421, 901
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	9 cut(s)	16, 19, 26, 258, 264, 498, 501, 723, 972
BspANI	GGCC	3 cut(s)	51, 72, 246
BspEI	TCCGGA	1 cut(s)	101
BspFNI	CGCG	3 cut(s)	82, 273, 574
BspHI	TCATGA	1 cut(s)	578
BspLI	GGNNCC	2 cut(s)	106, 1036
BspMAI	CTGCAG	1 cut(s)	825
BspMI	ACCTGC	2 cut(s)	597, 677
BsrDI	GCAATG	3 cut(s)	725, 862, 1087
BsrFI	RCCGGY	2 cut(s)	232, 1154
BsrGI	TGTACA	2 cut(s)	421, 901
BsrI	ACTGG	1 cut(s)	72
BssAI	RCCGGY	2 cut(s)	232, 1154
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	2 cut(s)	22, 298
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	3 cut(s)	206, 282, 941
Bst6I	CTCTTC	3 cut(s)	345, 699, 775
BstACI	GRCGYC	2 cut(s)	22, 298
BstAUI	TGTACA	2 cut(s)	421, 901
BstBAI	YACGTR	3 cut(s)	167, 239, 1051
BstC8I	GCNNGC	2 cut(s)	271, 373
BstDEI	CTNAG	1 cut(s)	907
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	7 cut(s)	34, 447, 720, 773, 884, 904, 1025
BstFNI	CGCG	3 cut(s)	82, 273, 574
BstHHI	GCGC	3 cut(s)	232, 371, 576
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 252, 261, 270, 366, 1205
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	2 cut(s)	821, 1112
BstSLI	GKGCMC	1 cut(s)	271
BstSNI	TACGTA	2 cut(s)	239, 1051
BstUI	CGCG	3 cut(s)	82, 273, 574
BstV1I	GCAGC	3 cut(s)	242, 807, 835
BsuRI	GGCC	3 cut(s)	51, 72, 246
BtgI	CCRYGG	1 cut(s)	29
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	7 cut(s)	34, 447, 720, 773, 884, 904, 1025
BtsIMutI	CAGTG	1 cut(s)	946
BveI	ACCTGC	2 cut(s)	597, 677
Cac8I	GCNNGC	2 cut(s)	271, 373
CaiI	CAGNNNCTG	1 cut(s)	1111
CciI	TCATGA	1 cut(s)	578
CfoI	GCGC	3 cut(s)	232, 371, 576
Cfr10I	RCCGGY	2 cut(s)	232, 1154
Cfr13I	GGNCC	3 cut(s)	50, 70, 244
CseI	GACGC	2 cut(s)	11, 287
Csp6I	GTAC	4 cut(s)	110, 236, 422, 902
CviAII	CATG	3 cut(s)	579, 654, 1209
CviQI	GTAC	4 cut(s)	110, 236, 422, 902
DdeI	CTNAG	1 cut(s)	907
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	345, 699, 775
EarI	CTCTTC	3 cut(s)	345, 699, 775
EciI	GGCGGA	1 cut(s)	15
Eco105I	TACGTA	2 cut(s)	239, 1051
Eco57I	CTGAAG	4 cut(s)	894, 1026, 1194, 1221
Eco72I	CACGTG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	46
EcoT22I	ATGCAT	2 cut(s)	548, 836
FaeI	CATG	3 cut(s)	582, 657, 1212
FatI	CATG	3 cut(s)	578, 653, 1208
FauI	CCCGC	1 cut(s)	494
FblI	GTMKAC	2 cut(s)	124, 984
Fnu4HI	GCNGC	6 cut(s)	17, 20, 256, 499, 821, 824
FokI	GGATG	7 cut(s)	21, 454, 727, 780, 891, 911, 1032
Fsp4HI	GCNGC	6 cut(s)	17, 20, 256, 499, 821, 824
FspBI	CTAG	1 cut(s)	427
GlaI	GCGC	3 cut(s)	231, 370, 575
GluI	GCNGC	6 cut(s)	17, 20, 256, 499, 821, 824
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	51, 72, 246
HapII	CCGG	5 cut(s)	102, 133, 233, 247, 1155
HgaI	GACGC	2 cut(s)	11, 287
HhaI	GCGC	3 cut(s)	232, 371, 576
Hin1I	GRCGYC	2 cut(s)	22, 298
Hin1II	CATG	3 cut(s)	582, 657, 1212
Hin6I	GCGC	3 cut(s)	230, 369, 574
HinP1I	GCGC	3 cut(s)	230, 369, 574
HincII	GTYRAC	3 cut(s)	125, 985, 1235
HindII	GTYRAC	3 cut(s)	125, 985, 1235
HinfI	GANTC	5 cut(s)	174, 221, 338, 416, 975
HpaII	CCGG	5 cut(s)	102, 133, 233, 247, 1155
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	7 cut(s)	125, 269, 424, 561, 904, 985, 1235
Hpy188I	TCNGA	5 cut(s)	190, 467, 619, 700, 1174
Hpy188III	TCNNGA	5 cut(s)	8, 102, 218, 306, 579
Hpy8I	GTNNAC	7 cut(s)	125, 269, 424, 561, 904, 985, 1235
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	7 cut(s)	68, 349, 488, 653, 869, 908, 1004
HpyCH4III	ACNGT	3 cut(s)	206, 282, 941
HpyCH4IV	ACGT	4 cut(s)	75, 166, 238, 1050
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 252, 261, 270, 366, 1205
HpyF3I	CTNAG	1 cut(s)	907
HpySE526I	ACGT	4 cut(s)	75, 166, 238, 1050
Hsp92I	GRCGYC	2 cut(s)	22, 298
Hsp92II	CATG	3 cut(s)	582, 657, 1212
HspAI	GCGC	3 cut(s)	230, 369, 574
Kpn2I	TCCGGA	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	104, 1034
Lsp1109I	GCAGC	3 cut(s)	242, 807, 835
LweI	GCATC	5 cut(s)	43, 533, 593, 705, 843
MaeI	CTAG	1 cut(s)	427
MaeII	ACGT	4 cut(s)	75, 166, 238, 1050
MaeIII	GTNAC	4 cut(s)	76, 525, 941, 1247
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	7 cut(s)	53, 362, 716, 792, 824, 1019, 1214
MhlI	GDGCHC	4 cut(s)	97, 271, 893, 1000
MluCI	AATT	5 cut(s)	199, 399, 740, 800, 1215
MluI	ACGCGT	1 cut(s)	271
MlyI	GAGTC	2 cut(s)	168, 984
Mph1103I	ATGCAT	2 cut(s)	548, 836
MroI	TCCGGA	1 cut(s)	101
MseI	TTAA	8 cut(s)	277, 436, 634, 790, 957, 1062, 1140, 1268
MslI	CAYNNNNRTG	1 cut(s)	909
MspA1I	CMGCKG	1 cut(s)	1199
MspI	CCGG	5 cut(s)	102, 133, 233, 247, 1155
MspR9I	CCNGG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	1193
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	3 cut(s)	82, 273, 574
MwoI	GCNNNNNNNGC	6 cut(s)	25, 252, 261, 270, 366, 1205
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	582, 657, 1212
NlaIV	GGNNCC	2 cut(s)	106, 1036
NmuCI	GTSAC	3 cut(s)	76, 941, 1247
NsiI	ATGCAT	2 cut(s)	548, 836
PagI	TCATGA	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	2 cut(s)	37, 121
PctI	GAATGC	1 cut(s)	1193
PfeI	GAWTC	3 cut(s)	221, 338, 416
PkrI	GCNGC	6 cut(s)	18, 21, 257, 500, 822, 825
PleI	GAGTC	2 cut(s)	168, 983
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	2 cut(s)	168, 983
Ppu21I	YACGTR	3 cut(s)	167, 239, 1051
PsiI	TTATAA	1 cut(s)	694
Psp6I	CCWGG	1 cut(s)	46
PspCI	CACGTG	1 cut(s)	167
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	106, 1036
PspPI	GGNCC	3 cut(s)	50, 70, 244
PsrI	GAACNNNNNNTAC	2 cut(s)	1086, 1118
PstI	CTGCAG	1 cut(s)	825
PstNI	CAGNNNCTG	1 cut(s)	1111
PvuII	CAGCTG	1 cut(s)	1199
RsaI	GTAC	4 cut(s)	111, 237, 423, 903
RsaNI	GTAC	4 cut(s)	110, 236, 422, 902
RseI	CAYNNNNRTG	1 cut(s)	909
SalI	GTCGAC	2 cut(s)	123, 983
SaqAI	TTAA	8 cut(s)	277, 436, 634, 790, 957, 1062, 1140, 1268
SatI	GCNGC	6 cut(s)	17, 20, 256, 499, 821, 824
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	3 cut(s)	50, 70, 244
SchI	GAGTC	2 cut(s)	168, 984
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	4 cut(s)	97, 271, 893, 1000
SfaNI	GCATC	5 cut(s)	43, 533, 593, 705, 843
SfcI	CTRYAG	2 cut(s)	821, 1112
SmiMI	CAYNNNNRTG	1 cut(s)	909
SmlI	CTYRAG	1 cut(s)	999
SmoI	CTYRAG	1 cut(s)	999
SnaBI	TACGTA	2 cut(s)	239, 1051
Sse9I	AATT	5 cut(s)	199, 399, 740, 800, 1215
SsiI	CCGC	9 cut(s)	16, 19, 26, 258, 264, 498, 501, 723, 972
SspMI	CTAG	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	206, 282, 941
TaiI	ACGT	4 cut(s)	78, 169, 241, 1053
TasI	AATT	5 cut(s)	199, 399, 740, 800, 1215
TatI	WGTACW	2 cut(s)	421, 901
TauI	GCSGC	3 cut(s)	19, 22, 501
TfiI	GAWTC	3 cut(s)	221, 338, 416
Tru1I	TTAA	8 cut(s)	277, 436, 634, 790, 957, 1062, 1140, 1268
Tru9I	TTAA	8 cut(s)	277, 436, 634, 790, 957, 1062, 1140, 1268
TscAI	CASTG	1 cut(s)	946
TseFI	GTSAC	3 cut(s)	76, 941, 1247
TseI	GCWGC	3 cut(s)	255, 820, 823
Tsp45I	GTSAC	3 cut(s)	76, 941, 1247
TspDTI	ATGAA	6 cut(s)	195, 507, 642, 717, 927, 1042
TspRI	CASTG	1 cut(s)	946
VneI	GTGCAC	1 cut(s)	267
XapI	RAATTY	2 cut(s)	399, 800
XmiI	GTMKAC	2 cut(s)	124, 984
XspI	CTAG	1 cut(s)	427
Zsp2I	ATGCAT	2 cut(s)	548, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.