Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012484

Physical Location & Seq

Genomic Coordinates Forward (+)

7242896 .. 7244978

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCATCCATTGATTCTCTCCAATTCCATTCTCTCTGCAATCTCCAGTCGTCGATTGGAAGAGCCAAGCTCCAGAATCCTTCAAGTTTGGTTATTTTCAGACGGAGACCCGTAAATCTGAATTGGGTTCAATTCGAAACTAAAGGAAGTTTCGTGTGTAAAGCGATTGGTGATTCCTCGACTCCAGATGAAGATATTCAGAACACTCAAAGTGATGATAATGTTGTTGTTGTTACTGCTACGACTCAGAGTGACATTCCCCATGATTCCGAGTATTCAATTTCGAGGTTTCGAAGTATGGTTACCACACTCCCTCCTGTTGTCTTCCTGATGAAGAAGTGCTCAGTGAACAGCATTTGGATTGGGGTCTGCATCACGGCTACTGTTTTGGTCGCTGCGATTAGGGCTTATGTAGTCAGAAAGTCAAGAGATAATCAGCGTGCTGGCTCTGTTGCTGATCTTGTGAGACGTGGCCAGCTGAGGTCTGGTGATAGAAGAGGCATCTCCAAATCTCTTAACTACGAGGACCCATTCAACAACCCTTTTGTGAAACTTGATAAAGGAAGCTCAACGGTAGAGATGTGCGGGAAAGTTTATCGGCTAGCTCCAGTCACACTTACAGAGAAAGAACAAACTATTCATCAGAAAAGAAGGTCAAGAGCTTACCAATGGAAGCGACCAACGATTTTTCTCAAAGAAGGGGACTCGATACCACCTGATGTTGATCCCGATACAGTCAGATGGATCCCGGCCAATCATCCGTTTGCCACCACAGTTAGCGATATCGATCAAGACCTTGCCCAGAATAATGTCTACCAGAAGCAAGGTGTTCCTTTCCGGATTCGAGCTGAGCATGAAGCTATGCAGAAAAAGCTTGAAGCTTTACAAAATGAGGAGAAATTGAACAATCTGAGTATTGACAGTCAAAATGCCAGAGATTTCCAGAGGCCATACAAGTTCTCAGCGAAGCTCGAAGGCGAGAATATCCAGAAGAATTCTCAGGAGAATCATACAGGCAATTCATCCTCTGAGGAAACGCACAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

39.42

Weight (kDa)

9.1

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20830 AT1G20830
fragaria_vesca	FvH4_5g25940
malus_domestica	MD06G1005200.v1.1
prunus_persica	Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1
pyrus_communis	pycom06g00490
rosa_chinensis	RchiOBHm_Chr4g0410601 RchiOBHm_Chr7g0216471
rosa_laevigata	RLG00000002568
rosa_multiflora	Rmu_ssc0000454.1_g000026
rosa_roxburghii	Rroxscaffold_3G00243210
rosa_rugosa	Rorug07G0160500
rosa_samantha	Rh4CG174600 Rh7AG299700 Rh7BG291200 Rh7DG301000
rosa_wichuraiana	Rw7G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	813
AccIII	TCCGGA	1 cut(s)	837
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	3 cut(s)	719, 739, 752
AcoI	YGGCCR	2 cut(s)	472, 750
AcsI	RAATTY	1 cut(s)	994
AgsI	TTSAA	6 cut(s)	84, 131, 279, 535, 878, 904
AjiI	CACGTC	1 cut(s)	470
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	100, 460
AlwI	GGATC	3 cut(s)	719, 739, 752
Aor13HI	TCCGGA	1 cut(s)	837
AoxI	GGCC	3 cut(s)	472, 750, 947
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	994
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	526
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	2 cut(s)	182, 500
AsuII	TTCGAA	2 cut(s)	135, 292
AsuNHI	GCTAGC	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	474
BamHI	GGATCC	1 cut(s)	744
BarI	GAAGNNNNNNTAC	2 cut(s)	286, 318
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	735
BceAI	ACGGC	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	100, 460
BfaI	CTAG	1 cut(s)	602
BisI	GCNGC	1 cut(s)	396
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	526
BmgBI	CACGTC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	528, 746
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	3 cut(s)	14, 381, 510
BmtI	GCTAGC	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	316
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	4 cut(s)	29, 56, 168, 591
Bpu10I	CCTNAGC	1 cut(s)	479
Bpu1102I	GCTNAGC	1 cut(s)	849
Bpu14I	TTCGAA	2 cut(s)	135, 292
BpuMI	CCSGG	1 cut(s)	749
Bsa29I	ATCGAT	1 cut(s)	786
BsaBI	GATNNNNATC	2 cut(s)	723, 786
BsaI	GGTCTC	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	837
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bse1I	ACTGG	2 cut(s)	46, 608
Bse8I	GATNNNNATC	2 cut(s)	723, 786
BseAI	TCCGGA	1 cut(s)	837
BseCI	ATCGAT	1 cut(s)	786
BseGI	GGATG	3 cut(s)	5, 757, 1022
BseJI	GATNNNNATC	2 cut(s)	723, 786
BseMII	CTCAG	8 cut(s)	260, 357, 470, 840, 902, 975, 1013, 1020
BseNI	ACTGG	2 cut(s)	46, 608
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	474, 752, 949
BshVI	ATCGAT	1 cut(s)	786
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	749, 838
BslFI	GGGAC	1 cut(s)	716
BsmAI	GTCTC	2 cut(s)	100, 460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	3 cut(s)	474, 752, 949
Bso31I	GGTCTC	1 cut(s)	100
Bsp119I	TTCGAA	2 cut(s)	135, 292
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	457, 724, 744, 787
Bsp1720I	GCTNAGC	1 cut(s)	849
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	3 cut(s)	474, 752, 949
BspCNI	CTCAG	8 cut(s)	259, 356, 471, 841, 903, 974, 1012, 1021
BspDI	ATCGAT	1 cut(s)	786
BspEI	TCCGGA	1 cut(s)	837
BspLI	GGNNCC	2 cut(s)	528, 746
BspOI	GCTAGC	1 cut(s)	605
BspPI	GGATC	3 cut(s)	719, 739, 752
BspQI	GCTCTTC	1 cut(s)	55
BspT104I	TTCGAA	2 cut(s)	135, 292
BspTNI	GGTCTC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	46, 608
BssMI	GATC	4 cut(s)	457, 724, 744, 787
Bst4CI	ACNGT	5 cut(s)	385, 574, 736, 775, 923
Bst6I	CTCTTC	2 cut(s)	55, 490
BstBI	TTCGAA	2 cut(s)	135, 292
BstC8I	GCNNGC	4 cut(s)	441, 445, 476, 603
BstDEI	CTNAG	8 cut(s)	246, 343, 479, 849, 911, 961, 999, 1029
BstEII	GGTNACC	1 cut(s)	301
BstF5I	GGATG	3 cut(s)	5, 757, 1022
BstKTI	GATC	4 cut(s)	460, 727, 747, 790
BstMAI	GTCTC	2 cut(s)	100, 460
BstMBI	GATC	4 cut(s)	457, 724, 744, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 871
BstPI	GGTNACC	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	747
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	786
BsuRI	GGCC	3 cut(s)	474, 752, 949
BsuTUI	ATCGAT	1 cut(s)	786
BtrI	CACGTC	1 cut(s)	470
BtsCI	GGATG	3 cut(s)	5, 757, 1022
BtsIMutI	CAGTG	1 cut(s)	351
Cac8I	GCNNGC	4 cut(s)	441, 445, 476, 603
Cfr13I	GGNCC	1 cut(s)	526
ClaI	ATCGAT	1 cut(s)	786
CviAII	CATG	2 cut(s)	263, 854
DdeI	CTNAG	8 cut(s)	246, 343, 479, 849, 911, 961, 999, 1029
DpnI	GATC	4 cut(s)	459, 726, 746, 789
DpnII	GATC	4 cut(s)	457, 724, 744, 787
EaeI	YGGCCR	2 cut(s)	472, 750
Eam1104I	CTCTTC	2 cut(s)	55, 490
EarI	CTCTTC	2 cut(s)	55, 490
Eco31I	GGTCTC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	526
Eco91I	GGTNACC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	994
EcoRV	GATATC	1 cut(s)	784
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	2 cut(s)	266, 857
FaiI	YATR	7 cut(s)	264, 299, 411, 855, 863, 952, 1011
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	2 cut(s)	262, 853
FauI	CCCGC	1 cut(s)	578
FblI	GTMKAC	1 cut(s)	813
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	744, 1009
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	602
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	4 cut(s)	29, 56, 168, 591
HaeIII	GGCC	3 cut(s)	474, 752, 949
HapII	CCGG	2 cut(s)	749, 838
Hin1II	CATG	2 cut(s)	266, 857
HindIII	AAGCTT	2 cut(s)	872, 879
HinfI	GANTC	9 cut(s)	14, 76, 173, 181, 244, 266, 704, 841, 1006
HpaII	CCGG	2 cut(s)	749, 838
HphI	GGTGA	2 cut(s)	182, 500
Hpy166II	GTNNAC	2 cut(s)	349, 814
Hpy8I	GTNNAC	2 cut(s)	349, 814
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	4 cut(s)	90, 645, 692, 968
HpyCH4III	ACNGT	5 cut(s)	385, 574, 736, 775, 923
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	3 cut(s)	39, 372, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 871
HpyF3I	CTNAG	8 cut(s)	246, 343, 479, 849, 911, 961, 999, 1029
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	266, 857
Kpn2I	TCCGGA	1 cut(s)	837
Kzo9I	GATC	4 cut(s)	457, 724, 744, 787
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	75, 610
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	3 cut(s)	14, 381, 510
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	4 cut(s)	232, 251, 301, 610
MalI	GATC	4 cut(s)	459, 726, 746, 789
MboI	GATC	4 cut(s)	457, 724, 744, 787
MboII	GAAGA	6 cut(s)	72, 203, 316, 346, 507, 1003
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	7 cut(s)	23, 121, 131, 279, 899, 994, 1018
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	3 cut(s)	175, 238, 698
Mox20I	TGGCCA	1 cut(s)	474
MroI	TCCGGA	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	2 cut(s)	749, 838
MspR9I	CCNGG	1 cut(s)	749
MwoI	GCNNNNNNNGC	2 cut(s)	404, 871
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	4 cut(s)	457, 724, 744, 787
NheI	GCTAGC	1 cut(s)	601
NlaIII	CATG	2 cut(s)	266, 857
NlaIV	GGNNCC	2 cut(s)	528, 746
NmuCI	GTSAC	2 cut(s)	251, 610
NspV	TTCGAA	2 cut(s)	135, 292
PciSI	GCTCTTC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	6 cut(s)	14, 76, 173, 266, 841, 1006
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	3 cut(s)	175, 238, 698
PpsI	GAGTC	3 cut(s)	175, 238, 698
PpuMI	RGGWCCY	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	528, 746
PspPI	GGNCC	1 cut(s)	526
PspPPI	RGGWCCY	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	744
PvuII	CAGCTG	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	4 cut(s)	457, 724, 744, 787
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	3 cut(s)	175, 238, 698
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	3 cut(s)	14, 381, 510
SfuI	TTCGAA	2 cut(s)	135, 292
SinI	GGWCC	1 cut(s)	526
Sse9I	AATT	7 cut(s)	23, 121, 131, 279, 899, 994, 1018
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	747
TaaI	ACNGT	5 cut(s)	385, 574, 736, 775, 923
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	9 cut(s)	53, 135, 179, 284, 292, 707, 786, 844, 972
TasI	AATT	7 cut(s)	23, 121, 131, 279, 899, 994, 1018
TfiI	GAWTC	6 cut(s)	14, 76, 173, 266, 841, 1006
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	2 cut(s)	251, 610
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	251, 610
TspDTI	ATGAA	5 cut(s)	204, 347, 629, 870, 1011
TspGWI	ACGGA	2 cut(s)	118, 750
TspRI	CASTG	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	2 cut(s)	53, 482
XmiI	GTMKAC	1 cut(s)	813
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.