Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012484

Physical Location & Seq

Genomic Coordinates Reverse (-)

587070 .. 588929

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1005200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTCCATTTCTTCTCTCCAATTCCAGTTGCTATCCTTCCAGCCCTCGATTTGGGGCTCAAGCTCAAACCATCGGACCCCTTCACTCCTACTGAAACTTAGACCCGAATTCGGCCGGGTTCGGCGACTGAAATCCAGTGAGAGGTTTCCACTGAGAGCCATTGACGGCTCGGTTGGTTCTGCTGGTGACGACCACACATCTCCTAATGGTGAGGTAGCGAAGACTGAGAACAAAATTACCATAACAAATCTCAAAGACTCAATCGGAAAATTGCCGGGAATGATCAGCTCCGTCACCCCATTGGTCTTTTCGATGCGACAACGAGAGGGATTCGATTTGGCAATTGGTTTGTGTATAGCAACTGCATTTGTGGTCATTGCTGTGAGAGTGTTTGTGGTTAGGAAATCTAAGTACGACCGCCCTGGCTCTGTCGCTGATCTTGTTAGACGCGGCCAGCTTAGGTCTGATAGAAGAGGCATTTCAACGCCTCTCAAGTATGATGACCCATTCAATAATCCACTGGTCAAGCTTGGTAAAGGAAATTCAACTGTAGAGATGTGCGGAAAGGTTTACCGCCTAGCCCCAGTTACCCTTACAAAAGAGCAGCAAGTTGTCCATCAGAAAAGGAGGTCGCGCGCTTACCAGTGGAAGAGACCTACAATTTTCCTAAAGGAAGGGGATTCAATACCGCCGGATGTTGACCCTGATACGGTTAGGTGGATTCCTGCCAATCATCCTTTTGCAACCACTGTTGGTGACATTGACGAAGACTTGGCACAAAACAATGTGTATCAAAAACACGGTGTTCCATTTCGAATTCAAGCTGAGCATGAAGCACTGCAGAGGGAGCAAAAGTTGAACAGGTTAGTGAATGACTCTAGCGATGATAGTGATTTTACGAATGCATTCAAGTCAGGTCCAAAGTCACCTGACCGTGGAGAAGAAAGCCGCATCAATAAGCAATCAGGTAACTTCAATCCACCATTATCAGAACGTGCCCCAAATTCATCTCGCAGTGTGCCACCTTATGAGGAAATGCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

39.03

Weight (kDa)

9.64

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20830 AT1G20830
fragaria_vesca	FvH4_5g25940
malus_domestica	MD06G1005200.v1.1
prunus_persica	Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1
pyrus_communis	pycom06g00490
rosa_chinensis	RchiOBHm_Chr4g0410601 RchiOBHm_Chr7g0216471
rosa_laevigata	RLG00000002568
rosa_multiflora	Rmu_ssc0000454.1_g000026
rosa_roxburghii	Rroxscaffold_3G00243210
rosa_rugosa	Rorug07G0160500
rosa_samantha	Rh4CG174600 Rh7AG299700 Rh7BG291200 Rh7DG301000
rosa_wichuraiana	Rw7G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	453, 637, 639
AciI	CCGC	6 cut(s)	421, 453, 564, 577, 692, 952
AcoI	YGGCCR	2 cut(s)	115, 454
AcsI	RAATTY	4 cut(s)	110, 544, 819, 1006
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
AgsI	TTSAA	8 cut(s)	486, 514, 549, 687, 824, 862, 913, 979
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	5 cut(s)	66, 291, 460, 532, 827
AluI	AGCT	5 cut(s)	66, 291, 460, 532, 827
Alw26I	GTCTC	1 cut(s)	649
AoxI	GGCC	2 cut(s)	115, 454
ApeKI	GCWGC	1 cut(s)	607
ApoI	RAATTY	4 cut(s)	110, 544, 819, 1006
Asp700I	GAANNNNTTC	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	639, 641
AspS9I	GGNCC	2 cut(s)	78, 920
AsuC2I	CCSGG	2 cut(s)	119, 279
AsuHPI	GGTGA	5 cut(s)	200, 224, 289, 770, 921
AsuII	TTCGAA	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	78, 920
BaeGI	GKGCMC	1 cut(s)	1003
BanII	GRGCYC	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	230, 777
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	2 cut(s)	81, 627
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	2 cut(s)	119, 279
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	2 cut(s)	581, 882
BfmI	CTRYAG	2 cut(s)	552, 842
BisI	GCNGC	3 cut(s)	454, 608, 952
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	3 cut(s)	455, 609, 953
Bme1390I	CCNGG	3 cut(s)	119, 279, 426
Bme18I	GGWCC	2 cut(s)	78, 920
BmgT120I	GGNCC	2 cut(s)	78, 920
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	119, 279, 426
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	2 cut(s)	306, 963
BmuI	ACTGGG	1 cut(s)	581
BpiI	GAAGAC	2 cut(s)	230, 777
Bpu10I	CCTNAGC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	2 cut(s)	46, 479
BpuMI	CCSGG	2 cut(s)	119, 279
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	2 cut(s)	424, 937
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
Bse1I	ACTGG	5 cut(s)	28, 138, 528, 587, 646
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	424, 937
BseGI	GGATG	2 cut(s)	703, 736
BseLI	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	146, 219, 819
BseNI	ACTGG	5 cut(s)	28, 138, 528, 587, 646
BsePI	GCGCGC	1 cut(s)	637
BseSI	GKGCMC	1 cut(s)	1003
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	619
Bsh1236I	CGCG	3 cut(s)	453, 637, 639
Bsh1285I	CGRYCG	2 cut(s)	118, 421
BshFI	GGCC	2 cut(s)	117, 456
BsiEI	CGRYCG	2 cut(s)	118, 421
BsiSI	CCGG	3 cut(s)	118, 278, 695
BslI	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
BsmAI	GTCTC	1 cut(s)	649
BsmI	GAATGC	2 cut(s)	908, 910
BsnI	GGCC	2 cut(s)	117, 456
Bso31I	GGTCTC	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	62, 1003
Bsp143I	GATC	2 cut(s)	285, 439
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	6 cut(s)	421, 453, 564, 577, 692, 952
BspANI	GGCC	2 cut(s)	117, 456
BspCNI	CTCAG	3 cut(s)	147, 220, 820
BspFNI	CGCG	3 cut(s)	453, 637, 639
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	846
BspT104I	TTCGAA	1 cut(s)	817
BspTNI	GGTCTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	5 cut(s)	28, 138, 528, 587, 646
BssECI	CCNNGG	2 cut(s)	424, 937
BssHII	GCGCGC	1 cut(s)	637
BssMI	GATC	2 cut(s)	285, 439
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	5 cut(s)	553, 715, 754, 806, 938
Bst6I	CTCTTC	2 cut(s)	469, 647
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	458, 639
BstDEI	CTNAG	6 cut(s)	101, 155, 228, 411, 461, 828
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	2 cut(s)	703, 736
BstFNI	CGCG	3 cut(s)	453, 637, 639
BstHHI	GCGC	2 cut(s)	639, 641
BstKTI	GATC	2 cut(s)	288, 442
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	2 cut(s)	285, 439
BstMCI	CGRYCG	2 cut(s)	118, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	850
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	117, 277, 424
BstSFI	CTRYAG	2 cut(s)	552, 842
BstSLI	GKGCMC	1 cut(s)	1003
BstUI	CGCG	3 cut(s)	453, 637, 639
BstV1I	GCAGC	1 cut(s)	619
BstV2I	GAAGAC	2 cut(s)	230, 777
BstZI	CGGCCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	117, 456
BtgI	CCRYGG	1 cut(s)	937
BtgZI	GCGATG	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	703, 736
BtsI	GCAGTG	2 cut(s)	839, 1024
BtsIMutI	CAGTG	7 cut(s)	145, 152, 521, 653, 750, 839, 1024
Cac8I	GCNNGC	2 cut(s)	458, 639
CfoI	GCGC	2 cut(s)	639, 641
Cfr13I	GGNCC	2 cut(s)	78, 920
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	2 cut(s)	833, 1043
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	6 cut(s)	101, 155, 228, 411, 461, 828
DpnI	GATC	2 cut(s)	287, 441
DpnII	GATC	2 cut(s)	285, 439
EaeI	YGGCCR	2 cut(s)	115, 454
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	469, 647
EarI	CTCTTC	2 cut(s)	469, 647
EclXI	CGGCCG	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	649
Eco47I	GGWCC	2 cut(s)	78, 920
Eco52I	CGGCCG	1 cut(s)	115
EcoRI	GAATTC	2 cut(s)	110, 819
EcoRII	CCWGG	1 cut(s)	424
EcoT22I	ATGCAT	2 cut(s)	910, 1044
EcoT38I	GRGCYC	1 cut(s)	62
FaeI	CATG	2 cut(s)	836, 1046
FaiI	YATR	6 cut(s)	245, 359, 501, 834, 1032, 1044
FatI	CATG	2 cut(s)	832, 1042
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	3 cut(s)	454, 608, 952
FokI	GGATG	2 cut(s)	710, 723
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	454, 608, 952
FspBI	CTAG	2 cut(s)	581, 882
GlaI	GCGC	2 cut(s)	638, 640
GluI	GCNGC	3 cut(s)	454, 608, 952
HaeIII	GGCC	2 cut(s)	117, 456
HapII	CCGG	3 cut(s)	118, 278, 695
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	639, 641
Hin1II	CATG	2 cut(s)	836, 1046
Hin6I	GCGC	2 cut(s)	637, 639
HinP1I	GCGC	2 cut(s)	637, 639
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	5 cut(s)	260, 333, 683, 724, 878
HpaII	CCGG	3 cut(s)	118, 278, 695
HphI	GGTGA	5 cut(s)	200, 224, 289, 770, 921
Hpy166II	GTNNAC	2 cut(s)	574, 703
Hpy188I	TCNGA	5 cut(s)	78, 269, 469, 624, 994
Hpy8I	GTNNAC	2 cut(s)	574, 703
HpyAV	CCTTC	3 cut(s)	49, 93, 671
HpyCH4III	ACNGT	5 cut(s)	553, 715, 754, 806, 938
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	5 cut(s)	368, 746, 844, 908, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	850
HpyF3I	CTNAG	6 cut(s)	101, 155, 228, 411, 461, 828
HpySE526I	ACGT	1 cut(s)	997
Hsp92II	CATG	2 cut(s)	836, 1046
HspAI	GCGC	2 cut(s)	637, 639
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	285, 439
LmnI	GCTCC	2 cut(s)	296, 850
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	2 cut(s)	306, 963
MaeI	CTAG	2 cut(s)	581, 882
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	6 cut(s)	188, 295, 589, 758, 927, 971
MalI	GATC	2 cut(s)	287, 441
MboI	GATC	2 cut(s)	285, 439
MboII	GAAGA	6 cut(s)	6, 235, 486, 664, 782, 956
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	62, 1003
MluCI	AATT	9 cut(s)	23, 110, 237, 272, 345, 544, 663, 819, 1006
MlyI	GAGTC	2 cut(s)	254, 872
MnlI	CCTC	9 cut(s)	58, 138, 208, 322, 470, 501, 624, 840, 1027
Mph1103I	ATGCAT	2 cut(s)	910, 1044
MroXI	GAANNNNTTC	1 cut(s)	908
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	3 cut(s)	118, 278, 695
MspR9I	CCNGG	3 cut(s)	119, 279, 426
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	2 cut(s)	908, 910
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	3 cut(s)	453, 637, 639
MwoI	GCNNNNNNNGC	1 cut(s)	850
NciI	CCSGG	2 cut(s)	119, 279
NdeII	GATC	2 cut(s)	285, 439
NlaIII	CATG	2 cut(s)	836, 1046
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	188, 295, 758, 927
NsiI	ATGCAT	2 cut(s)	910, 1044
NspV	TTCGAA	1 cut(s)	817
PauI	GCGCGC	1 cut(s)	637
PctI	GAATGC	2 cut(s)	908, 910
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	333, 683, 724
PkrI	GCNGC	3 cut(s)	455, 609, 953
PleI	GAGTC	2 cut(s)	254, 872
PpsI	GAGTC	2 cut(s)	254, 872
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	2 cut(s)	78, 920
PstI	CTGCAG	1 cut(s)	846
PteI	GCGCGC	1 cut(s)	637
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	3 cut(s)	454, 608, 952
Sau3AI	GATC	2 cut(s)	285, 439
Sau96I	GGNCC	2 cut(s)	78, 920
SchI	GAGTC	2 cut(s)	254, 872
ScrFI	CCNGG	3 cut(s)	119, 279, 426
SduI	GDGCHC	2 cut(s)	62, 1003
SfaNI	GCATC	2 cut(s)	306, 963
SfcI	CTRYAG	2 cut(s)	552, 842
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	2 cut(s)	78, 920
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	61, 494
SmoI	CTYRAG	2 cut(s)	61, 494
Sse9I	AATT	9 cut(s)	23, 110, 237, 272, 345, 544, 663, 819, 1006
SsiI	CCGC	6 cut(s)	421, 453, 564, 577, 692, 952
SspMI	CTAG	2 cut(s)	581, 882
StyD4I	CCNGG	3 cut(s)	117, 277, 424
TaaI	ACNGT	5 cut(s)	553, 715, 754, 806, 938
TaiI	ACGT	1 cut(s)	1000
TaqI	TCGA	4 cut(s)	50, 314, 336, 817
TasI	AATT	9 cut(s)	23, 110, 237, 272, 345, 544, 663, 819, 1006
TauI	GCSGC	2 cut(s)	456, 954
TfiI	GAWTC	3 cut(s)	333, 683, 724
TscAI	CASTG	7 cut(s)	145, 159, 528, 653, 757, 846, 1024
TseFI	GTSAC	4 cut(s)	188, 295, 758, 927
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	4 cut(s)	188, 295, 758, 927
TspDTI	ATGAA	2 cut(s)	849, 999
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	7 cut(s)	145, 159, 528, 653, 757, 846, 1024
VpaK11BI	GGWCC	2 cut(s)	78, 920
XapI	RAATTY	4 cut(s)	110, 544, 819, 1006
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	2 cut(s)	581, 882
Zsp2I	ATGCAT	2 cut(s)	910, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.