Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012484

Physical Location & Seq

Genomic Coordinates Forward (+)

34473307 .. 34475484

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG301000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGATCAGCTCAGTCTCTCCCATTGTTTTCAAGATACGACAACGAGTGGGATCGAATTTGGCAATTGGTTTATGTATTGCAACTGCATTTTTGGTGGTTGCTCTGAGAGTATTCATGGTCAGGAAGTCGAAGAACAACCGTCAAGGCTCTGTAGCTGATCTTGTCAGACGTGGTCAGCTTAGGTCCGATAGAAGAGGCATTTCGAAGCCTCTCATGTACGATGACCCATTCAATAATCCATTGGTTAAAGTTGGTAAGGGAAATTCGACTATAGAGATGTGTGGAAAGGTATATCGCCTTGCCCCAATTACTCTTACGAAAGAGGAACAAGCTATCCATCGAAAGAGGAGGTCGCGGGCATACCAGTGGAAGAGACCGACAATGTTCCTTAAAGAAGGGGATTCGATACCTGCTGACGTTGACCCAGATACAATTAGGTGGATTCCTTCCAATCATCCTTTTGCAACCACTGCCGGTGACATTGATGAAGACTTGGCACAGACCAATGTGTATCAGAAACATGGTGTACCGTATCGAATTCAGGCTGAGCATGAAGCACTGCAGAGAGAGCAAAAGGAGAGCAGGTTAGTGATGGACTCTAGCAATGCTACAGATCCTGTGAAAGCATTTAAGTCGGGTCCCAAGTTATCCGAGCATGGGGAAGAAAACCTGATCAGTAATGAAGGTGGTGACTCCAAGCCACCCTTATCAGAACGTGCCTCAAATTCCTCTGGTAGCATGTCATCCTCCGAGGAAAGGCATAAACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.6

Weight (kDa)

9.66

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20830 AT1G20830
fragaria_vesca	FvH4_5g25940
malus_domestica	MD06G1005200.v1.1
prunus_persica	Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1
pyrus_communis	pycom06g00490
rosa_chinensis	RchiOBHm_Chr4g0410601 RchiOBHm_Chr7g0216471
rosa_laevigata	RLG00000002568
rosa_multiflora	Rmu_ssc0000454.1_g000026
rosa_roxburghii	Rroxscaffold_3G00243210
rosa_rugosa	Rorug07G0160500
rosa_samantha	Rh4CG174600 Rh7AG299700 Rh7BG291200 Rh7DG301000
rosa_wichuraiana	Rw7G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	418, 573
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	2 cut(s)	58, 608
AcsI	RAATTY	4 cut(s)	55, 262, 537, 724
AfaI	GTAC	2 cut(s)	218, 528
AfiI	CCNNNNNNNGG	2 cut(s)	657, 756
AgsI	TTSAA	2 cut(s)	31, 232
AjiI	CACGTC	1 cut(s)	170
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	4 cut(s)	9, 155, 178, 332
AluI	AGCT	4 cut(s)	9, 155, 178, 332
Alw26I	GTCTC	2 cut(s)	19, 367
AlwI	GGATC	2 cut(s)	58, 608
AlwNI	CAGNNNCTG	1 cut(s)	617
ApoI	RAATTY	4 cut(s)	55, 262, 537, 724
AspS9I	GGNCC	2 cut(s)	183, 638
AsuHPI	GGTGA	2 cut(s)	488, 701
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	2 cut(s)	183, 638
BbsI	GAAGAC	1 cut(s)	495
BccI	CCATC	2 cut(s)	345, 586
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BclI	TGATCA	2 cut(s)	3, 672
BcoDI	GTCTC	2 cut(s)	19, 367
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	4 cut(s)	150, 270, 560, 609
BfuAI	ACCTGC	2 cut(s)	418, 573
BlpI	GCTNAGC	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	183, 638
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	183, 638
BmiI	GGNNCC	2 cut(s)	639, 640
BpiI	GAAGAC	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	750
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	657, 756
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	610
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	2 cut(s)	454, 743
BseLI	CCNNNNNNNGG	2 cut(s)	657, 756
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	3 cut(s)	24, 95, 537
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	2 cut(s)	657, 756
BsmAI	GTCTC	2 cut(s)	19, 367
BsmFI	GGGAC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	367
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	3, 50, 157, 613, 672
Bsp1720I	GCTNAGC	1 cut(s)	546
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	3 cut(s)	23, 96, 538
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	639, 640
BspMAI	CTGCAG	1 cut(s)	564
BspMI	ACCTGC	2 cut(s)	418, 573
BspPI	GGATC	2 cut(s)	58, 608
BspT104I	TTCGAA	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	5 cut(s)	3, 50, 157, 613, 672
Bst4CI	ACNGT	2 cut(s)	140, 531
Bst6I	CTCTTC	2 cut(s)	187, 365
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	4 cut(s)	10, 104, 179, 546
BstF5I	GGATG	2 cut(s)	454, 743
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	5 cut(s)	6, 53, 160, 616, 675
BstMAI	GTCTC	2 cut(s)	19, 367
BstMBI	GATC	5 cut(s)	3, 50, 157, 613, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 568
BstNSI	RCATGY	1 cut(s)	742
BstSFI	CTRYAG	4 cut(s)	150, 270, 560, 609
BstUI	CGCG	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	454, 743
BtsI	GCAGTG	2 cut(s)	468, 557
BtsIMutI	CAGTG	3 cut(s)	371, 468, 557
BveI	ACCTGC	2 cut(s)	418, 573
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	617
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	2 cut(s)	183, 638
Csp6I	GTAC	2 cut(s)	217, 527
CviAII	CATG	6 cut(s)	115, 214, 521, 551, 656, 739
CviJI	RGCY	8 cut(s)	9, 147, 155, 178, 208, 332, 545, 700
CviKI_1	RGCY	8 cut(s)	9, 147, 155, 178, 208, 332, 545, 700
CviQI	GTAC	2 cut(s)	217, 527
DdeI	CTNAG	4 cut(s)	10, 104, 179, 546
DpnI	GATC	5 cut(s)	5, 52, 159, 615, 674
DpnII	GATC	5 cut(s)	3, 50, 157, 613, 672
Eam1104I	CTCTTC	2 cut(s)	187, 365
EarI	CTCTTC	2 cut(s)	187, 365
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	183, 638
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	537
FaeI	CATG	6 cut(s)	118, 217, 524, 554, 659, 742
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	6 cut(s)	114, 213, 520, 550, 655, 738
FauI	CCCGC	1 cut(s)	348
FbaI	TGATCA	2 cut(s)	3, 672
FokI	GGATG	2 cut(s)	441, 730
FspBI	CTAG	1 cut(s)	600
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	6 cut(s)	118, 217, 524, 554, 659, 742
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	4 cut(s)	401, 442, 596, 692
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	488, 701
Hpy166II	GTNNAC	2 cut(s)	421, 527
Hpy188I	TCNGA	7 cut(s)	105, 167, 187, 516, 652, 712, 751
Hpy188III	TCNNGA	2 cut(s)	31, 121
Hpy8I	GTNNAC	2 cut(s)	421, 527
HpyAV	CCTTC	3 cut(s)	389, 456, 677
HpyCH4III	ACNGT	2 cut(s)	140, 531
HpyCH4IV	ACGT	3 cut(s)	169, 417, 715
HpyCH4V	TGCA	4 cut(s)	80, 86, 464, 562
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 568
HpyF3I	CTNAG	4 cut(s)	10, 104, 179, 546
HpySE526I	ACGT	3 cut(s)	169, 417, 715
Hsp92II	CATG	6 cut(s)	118, 217, 524, 554, 659, 742
KflI	GGGWCCC	1 cut(s)	638
Ksp22I	TGATCA	2 cut(s)	3, 672
Kzo9I	GATC	5 cut(s)	3, 50, 157, 613, 672
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	3 cut(s)	169, 417, 715
MaeIII	GTNAC	2 cut(s)	476, 689
MalI	GATC	5 cut(s)	5, 52, 159, 615, 674
MboI	GATC	5 cut(s)	3, 50, 157, 613, 672
MboII	GAAGA	5 cut(s)	142, 204, 382, 500, 674
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	7 cut(s)	55, 63, 262, 306, 432, 537, 724
MlyI	GAGTC	2 cut(s)	590, 686
MnlI	CCTC	9 cut(s)	188, 219, 316, 339, 342, 730, 739, 745, 757
MseI	TTAA	3 cut(s)	246, 390, 630
MslI	CAYNNNNRTG	1 cut(s)	364
MspI	CCGG	1 cut(s)	474
MunI	CAATTG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	2 cut(s)	470, 568
NdeII	GATC	5 cut(s)	3, 50, 157, 613, 672
NlaIII	CATG	6 cut(s)	118, 217, 524, 554, 659, 742
NlaIV	GGNNCC	2 cut(s)	639, 640
NmuCI	GTSAC	2 cut(s)	476, 689
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	401, 442
PflFI	GACNNNGTC	1 cut(s)	171
PleI	GAGTC	2 cut(s)	590, 686
PpsI	GAGTC	2 cut(s)	590, 686
PpuMI	RGGWCCY	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	638
PspN4I	GGNNCC	2 cut(s)	639, 640
PspPI	GGNCC	2 cut(s)	183, 638
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	564
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	613
PsyI	GACNNNGTC	1 cut(s)	171
RsaI	GTAC	2 cut(s)	218, 528
RsaNI	GTAC	2 cut(s)	217, 527
RseI	CAYNNNNRTG	1 cut(s)	364
SaqAI	TTAA	3 cut(s)	246, 390, 630
Sau3AI	GATC	5 cut(s)	3, 50, 157, 613, 672
Sau96I	GGNCC	2 cut(s)	183, 638
SchI	GAGTC	2 cut(s)	590, 686
SfcI	CTRYAG	4 cut(s)	150, 270, 560, 609
SfuI	TTCGAA	1 cut(s)	203
SinI	GGWCC	2 cut(s)	183, 638
SmiMI	CAYNNNNRTG	1 cut(s)	364
Sse9I	AATT	7 cut(s)	55, 63, 262, 306, 432, 537, 724
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	140, 531
TaiI	ACGT	3 cut(s)	172, 420, 718
TaqI	TCGA	7 cut(s)	53, 128, 203, 266, 340, 404, 535
TaqII	GACCGA	1 cut(s)	391
TasI	AATT	7 cut(s)	55, 63, 262, 306, 432, 537, 724
TfiI	GAWTC	2 cut(s)	401, 442
Tru1I	TTAA	3 cut(s)	246, 390, 630
Tru9I	TTAA	3 cut(s)	246, 390, 630
TscAI	CASTG	3 cut(s)	371, 475, 564
TseFI	GTSAC	2 cut(s)	476, 689
Tsp45I	GTSAC	2 cut(s)	476, 689
TspDTI	ATGAA	4 cut(s)	103, 501, 567, 696
TspRI	CASTG	3 cut(s)	371, 475, 564
Tth111I	GACNNNGTC	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	183, 638
XapI	RAATTY	4 cut(s)	55, 262, 537, 724
XceI	RCATGY	1 cut(s)	742
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.