Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012484

Physical Location & Seq

Genomic Coordinates Forward (+)

17414477 .. 17416239

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g25940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTTCCACTTCCACTCTCCAATTCCACTCCCTTTCATTCCAGACCTCAATTTGGGTCGCAAGGCATCAAACGCCTGGATTGCTTAGACCCCAATTCGGGTCCGGTAACTGTCGGTTCATCTGGGCTCGACGGCTAAAACCCACCCACAGGTTCCTAGTTAGAGCCATTGACGGCTCAGTTAGCTCTAATGGTGAAAACCCTAGTGCCCTTAATGATGATTACAAGTTTACCACAAACCTCAAGGACCCAGTTGACAAATTCCACGTAATGGTCTGCTCAGTCCCTCCCATTGTCTTCAAGATACGACAACGAGTAGGATCGAATTTGGCAATTGGTTTATGTATTGCAACTGCATTTTTGGTGGTTGCTCTGAGAGTGTTCATGGTGAGGAAGTCGAAGAACAACCGTCAAGGCTCTGTCGCTGATCTTGTTAGACGCGGTCAGCTTAGGTCCGATAGAAGAGGCATTTCAAAGCCTCTCATGTACGATGACCCATTCAATAATCCATTGGTTAAAGTTGGTAAGGGAAATTCGACTATAGAGATGTGTGGAAAGGTTTATCGCCTTGCCCCAATTACTCTTACGAAAGAGGAACAAGCTATCCATCGAAAGAGGAGGTCGCGGGCATACCAGTGGAAGAGACCGACAATGTTCCTTAAAGAAGGGGATTTAATACCTGCTGATGTTGACCCTGATACAGTTAGGTGGATCCCTTCCAATCATCCTTTTGCAACCACTGCTGGTGACATTGATGAAGACTTGGCACAGACCAATGTGTATCAGAAACATGGTGTACCGTATCGGATTCAGGCTGAGCATGAAGCATTGCAGAGAGTAAGTAGTACATTATGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.43

Weight (kDa)

10.15

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20830 AT1G20830
fragaria_vesca	FvH4_5g25940
malus_domestica	MD06G1005200.v1.1
prunus_persica	Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1
pyrus_communis	pycom06g00490
rosa_chinensis	RchiOBHm_Chr4g0410601 RchiOBHm_Chr7g0216471
rosa_laevigata	RLG00000002568
rosa_multiflora	Rmu_ssc0000454.1_g000026
rosa_roxburghii	Rroxscaffold_3G00243210
rosa_rugosa	Rorug07G0160500
rosa_samantha	Rh4CG174600 Rh7AG299700 Rh7BG291200 Rh7DG301000
rosa_wichuraiana	Rw7G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccII	CGCG	2 cut(s)	441, 625
AciI	CCGC	2 cut(s)	441, 625
AclWI	GGATC	3 cut(s)	328, 706, 719
AcsI	RAATTY	3 cut(s)	260, 325, 532
AfaI	GTAC	3 cut(s)	488, 798, 847
AfiI	CCNNNNNNNGG	5 cut(s)	54, 98, 99, 150, 271
AgsI	TTSAA	3 cut(s)	301, 474, 502
AjnI	CCWGG	1 cut(s)	76
AloI	GAACNNNNNNTCC	2 cut(s)	588, 620
AluBI	AGCT	3 cut(s)	186, 448, 602
AluI	AGCT	3 cut(s)	186, 448, 602
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	3 cut(s)	328, 706, 719
ApoI	RAATTY	3 cut(s)	260, 325, 532
AspS9I	GGNCC	3 cut(s)	102, 247, 453
AsuHPI	GGTGA	3 cut(s)	206, 400, 758
AvaII	GGWCC	3 cut(s)	102, 247, 453
BaeGI	GKGCMC	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	711
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	2 cut(s)	289, 765
BccI	CCATC	1 cut(s)	615
BceAI	ACGGC	2 cut(s)	149, 190
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	637
BfaI	CTAG	2 cut(s)	158, 204
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	688
BlpI	GCTNAGC	1 cut(s)	816
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	3 cut(s)	102, 247, 453
BmgT120I	GGNCC	3 cut(s)	102, 247, 453
BmiI	GGNNCC	4 cut(s)	103, 155, 249, 713
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	289, 765
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	637
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 98, 99, 150, 271
Bse1I	ACTGG	2 cut(s)	251, 634
Bse3DI	GCAATG	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	5 cut(s)	54, 98, 99, 150, 271
BseMI	GCAATG	1 cut(s)	827
BseMII	CTCAG	4 cut(s)	192, 294, 365, 807
BseNI	ACTGG	2 cut(s)	251, 634
BseRI	GAGGAG	1 cut(s)	631
BseSI	GKGCMC	1 cut(s)	211
Bsh1236I	CGCG	2 cut(s)	441, 625
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	5 cut(s)	54, 98, 99, 150, 271
BsmAI	GTCTC	1 cut(s)	637
BsmFI	GGGAC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	130, 211
Bsp143I	GATC	3 cut(s)	320, 427, 711
Bsp1720I	GCTNAGC	1 cut(s)	816
BspACI	CCGC	2 cut(s)	441, 625
BspCNI	CTCAG	4 cut(s)	191, 293, 366, 808
BspFNI	CGCG	2 cut(s)	441, 625
BspLI	GGNNCC	4 cut(s)	103, 155, 249, 713
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	3 cut(s)	328, 706, 719
BspTNI	GGTCTC	1 cut(s)	637
BsrDI	GCAATG	1 cut(s)	827
BsrI	ACTGG	2 cut(s)	251, 634
BssMI	GATC	3 cut(s)	320, 427, 711
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	4 cut(s)	113, 410, 703, 801
Bst6I	CTCTTC	2 cut(s)	457, 635
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	6 cut(s)	86, 178, 280, 374, 449, 816
BstF5I	GGATG	1 cut(s)	724
BstFNI	CGCG	2 cut(s)	441, 625
BstKTI	GATC	3 cut(s)	323, 430, 714
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	3 cut(s)	320, 427, 711
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 82, 183, 740
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	441, 625
BstV2I	GAAGAC	2 cut(s)	289, 765
BstX2I	RGATCY	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	724
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	641, 738
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	1 cut(s)	627
Cfr13I	GGNCC	3 cut(s)	102, 247, 453
CseI	GACGC	1 cut(s)	447
Csp6I	GTAC	3 cut(s)	487, 797, 846
CviAII	CATG	4 cut(s)	385, 484, 791, 821
CviQI	GTAC	3 cut(s)	487, 797, 846
DdeI	CTNAG	6 cut(s)	86, 178, 280, 374, 449, 816
DpnI	GATC	3 cut(s)	322, 429, 713
DpnII	GATC	3 cut(s)	320, 427, 711
Eam1104I	CTCTTC	2 cut(s)	457, 635
EarI	CTCTTC	2 cut(s)	457, 635
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	637
Eco47I	GGWCC	3 cut(s)	102, 247, 453
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	4 cut(s)	388, 487, 794, 824
FaiI	YATR	8 cut(s)	343, 386, 485, 542, 631, 792, 822, 853
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	4 cut(s)	384, 483, 790, 820
FauI	CCCGC	1 cut(s)	618
FokI	GGATG	1 cut(s)	711
FriOI	GRGCYC	1 cut(s)	130
FspBI	CTAG	2 cut(s)	158, 204
HapII	CCGG	1 cut(s)	105
HgaI	GACGC	1 cut(s)	447
Hin1II	CATG	4 cut(s)	388, 487, 794, 824
HincII	GTYRAC	2 cut(s)	256, 691
HindII	GTYRAC	2 cut(s)	256, 691
HinfI	GANTC	1 cut(s)	808
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	206, 400, 758
Hpy166II	GTNNAC	4 cut(s)	231, 256, 691, 797
Hpy188I	TCNGA	4 cut(s)	375, 457, 786, 807
Hpy188III	TCNNGA	2 cut(s)	43, 301
Hpy8I	GTNNAC	4 cut(s)	231, 256, 691, 797
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	2 cut(s)	659, 726
HpyCH4III	ACNGT	4 cut(s)	113, 410, 703, 801
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	350, 356, 734, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 82, 183, 740
HpyF3I	CTNAG	6 cut(s)	86, 178, 280, 374, 449, 816
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	388, 487, 794, 824
Kzo9I	GATC	3 cut(s)	320, 427, 711
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	158, 204
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	107, 746
MalI	GATC	3 cut(s)	322, 429, 713
MboI	GATC	3 cut(s)	320, 427, 711
MboII	GAAGA	5 cut(s)	289, 412, 474, 652, 770
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	2 cut(s)	130, 211
MluCI	AATT	8 cut(s)	23, 51, 95, 260, 325, 333, 532, 576
MnlI	CCTC	9 cut(s)	58, 251, 297, 384, 458, 489, 586, 609, 612
MseI	TTAA	4 cut(s)	213, 516, 660, 674
MslI	CAYNNNNRTG	1 cut(s)	634
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	2 cut(s)	441, 625
MwoI	GCNNNNNNNGC	4 cut(s)	73, 82, 183, 740
NdeII	GATC	3 cut(s)	320, 427, 711
NlaIII	CATG	4 cut(s)	388, 487, 794, 824
NlaIV	GGNNCC	4 cut(s)	103, 155, 249, 713
NmuCI	GTSAC	1 cut(s)	746
PfeI	GAWTC	1 cut(s)	808
PflFI	GACNNNGTC	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	247
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	103, 155, 249, 713
PspPI	GGNCC	3 cut(s)	102, 247, 453
PspPPI	RGGWCCY	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	711
PsyI	GACNNNGTC	1 cut(s)	441
RsaI	GTAC	3 cut(s)	488, 798, 847
RsaNI	GTAC	3 cut(s)	487, 797, 846
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	4 cut(s)	213, 516, 660, 674
Sau3AI	GATC	3 cut(s)	320, 427, 711
Sau96I	GGNCC	3 cut(s)	102, 247, 453
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	130, 211
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	3 cut(s)	102, 247, 453
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	8 cut(s)	23, 51, 95, 260, 325, 333, 532, 576
SsiI	CCGC	2 cut(s)	441, 625
SspMI	CTAG	2 cut(s)	158, 204
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	113, 410, 703, 801
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	5 cut(s)	130, 323, 398, 536, 610
TaqII	GACCGA	1 cut(s)	661
TasI	AATT	8 cut(s)	23, 51, 95, 260, 325, 333, 532, 576
TatI	WGTACW	1 cut(s)	845
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	4 cut(s)	213, 516, 660, 674
Tru9I	TTAA	4 cut(s)	213, 516, 660, 674
TscAI	CASTG	2 cut(s)	641, 745
TseFI	GTSAC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	5 cut(s)	27, 109, 373, 771, 837
TspRI	CASTG	2 cut(s)	641, 745
Tth111I	GACNNNGTC	1 cut(s)	441
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	102, 247, 453
XapI	RAATTY	3 cut(s)	260, 325, 532
XspI	CTAG	2 cut(s)	158, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.