Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012484

Physical Location & Seq

Genomic Coordinates Reverse (-)

475962 .. 477523

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCTTCCATTTCTTCTCTCCAATTCCAGTTGCTATCCTTTCAGCCCTCGATTTGGGGCTCAGACTCAAACCATCGGACCCCTTCACTCCTACTGAAAGTTAGGCCCGAATGTGGCCGGGTTCGGCGACTGAAATCCAGTGAGAGGTTTCGACTGAGAGCCATTGACGGCTCGGTTGGTTCTGCTGGTGACGACCACACATCTCCTAATGGTGAGGTAGCGAAGACTGAGAACAAAATTACCATAACAAATCACAAAGACTCAATCGGAAAATTGCAGGGAATGATCAGCTCCGTCACCCCCTTGGTCCTTTCGATGCGACAACGAGAGGGATTCGATTTGGCAATTGGTTTGTGTATAGCAACTGCATTTGTGGTCATTGCCGTGAGAGTGTTTGTGGTTAGGAAATCTAAGTACGACCGCCCTGGCTCTGTCGCTGATCTTGTTAGACGCGGTCAGCTTAGGTCTGATAGAAGAGGCATTTCAACGCCTCTCAAGTATGATGACCCATTCAATAATCCACTGGTCAAGCTTGGTAAAGGAAATTCAACTGTAGAGATGTGCGGAAAGGTTTACCGCCTAGCCCCTGTTACGCTCACAAAAGATCAGCAAGTTGTCCATCAGAAAAGGAGGTCGCGCGCTTACCAGTGGAAGAGACCTACAATTTTCCTTAAGGAAGGGGATTCAATACCACCGGATGTTGACCCTGATACGGTTAGGTGGATTCCTGCCAATCATCCTTTTGCAACCACAGTTGGTGACATTGACGAAGACTTGGCACAAAACAATGTGTATCAAAAACATGGTGTTCCATTTCGAATTCAAGCTGAGCATGAAGCACTGCAGAGGGAGCAAAAGTTGAACAGGCTAGTGAATGACTCTACCGATGCTAGTGATTTTACGAATGCGTTCAAGTCAGGTCCAAAGTCACCTGACCGTGGAGAAGAAAGCCGCATCAATAAGCAAGCAGGTAACTTCAATCCACCATTATCAGAACATGCCCCAAATTCATCTCGCAGTGTGCCGCCTTCTGAGGAAATGCATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

350

Amino Acids

38.93

Weight (kDa)

9.61

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20830 AT1G20830
fragaria_vesca	FvH4_5g25940
malus_domestica	MD06G1005200.v1.1
prunus_persica	Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1
pyrus_communis	pycom06g00490
rosa_chinensis	RchiOBHm_Chr4g0410601 RchiOBHm_Chr7g0216471
rosa_laevigata	RLG00000002568
rosa_multiflora	Rmu_ssc0000454.1_g000026
rosa_roxburghii	Rroxscaffold_3G00243210
rosa_rugosa	Rorug07G0160500
rosa_samantha	Rh4CG174600 Rh7AG299700 Rh7BG291200 Rh7DG301000
rosa_wichuraiana	Rw7G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	959
AccII	CGCG	3 cut(s)	453, 637, 639
AciI	CCGC	6 cut(s)	421, 453, 564, 577, 952, 1025
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	544, 819, 1006
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
AflII	CTTAAG	1 cut(s)	671
AgsI	TTSAA	8 cut(s)	486, 514, 549, 687, 824, 862, 913, 979
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	4 cut(s)	291, 460, 532, 827
AluI	AGCT	4 cut(s)	291, 460, 532, 827
Alw26I	GTCTC	1 cut(s)	649
AoxI	GGCC	2 cut(s)	104, 115
ApoI	RAATTY	3 cut(s)	544, 819, 1006
Asp700I	GAANNNNTTC	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	639, 641
AspS9I	GGNCC	4 cut(s)	78, 105, 307, 920
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	5 cut(s)	200, 224, 289, 770, 921
AsuII	TTCGAA	1 cut(s)	817
AvaII	GGWCC	3 cut(s)	78, 307, 920
BanII	GRGCYC	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	230, 777
BccI	CCATC	2 cut(s)	81, 627
BceAI	ACGGC	2 cut(s)	184, 368
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	3 cut(s)	581, 869, 891
BfmI	CTRYAG	2 cut(s)	552, 842
BfrI	CTTAAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	959
BisI	GCNGC	2 cut(s)	952, 1025
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	2 cut(s)	953, 1026
Bme1390I	CCNGG	2 cut(s)	119, 426
Bme18I	GGWCC	3 cut(s)	78, 307, 920
BmgT120I	GGNCC	4 cut(s)	78, 105, 307, 920
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	2 cut(s)	119, 426
BmsI	GCATC	3 cut(s)	306, 877, 963
BpiI	GAAGAC	2 cut(s)	230, 777
Bpu10I	CCTNAGC	1 cut(s)	461
Bpu1102I	GCTNAGC	1 cut(s)	828
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	3 cut(s)	303, 424, 937
BsaWI	WCCGGW	1 cut(s)	694
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
Bse1I	ACTGG	4 cut(s)	28, 138, 528, 646
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	303, 424, 937
BseGI	GGATG	2 cut(s)	703, 736
BseLI	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	5 cut(s)	75, 146, 219, 819, 1023
BseNI	ACTGG	4 cut(s)	28, 138, 528, 646
BsePI	GCGCGC	1 cut(s)	637
Bsh1236I	CGCG	3 cut(s)	453, 637, 639
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	106, 117
BsiEI	CGRYCG	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	118, 695
BslI	CCNNNNNNNGG	5 cut(s)	54, 113, 144, 712, 938
BsmAI	GTCTC	1 cut(s)	649
BsmI	GAATGC	1 cut(s)	910
BsnI	GGCC	2 cut(s)	106, 117
Bso31I	GGTCTC	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	285, 439, 604
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	6 cut(s)	421, 453, 564, 577, 952, 1025
BspANI	GGCC	2 cut(s)	106, 117
BspCNI	CTCAG	5 cut(s)	74, 147, 220, 820, 1024
BspFNI	CGCG	3 cut(s)	453, 637, 639
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	846
BspMI	ACCTGC	1 cut(s)	959
BspT104I	TTCGAA	1 cut(s)	817
BspTI	CTTAAG	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	4 cut(s)	28, 138, 528, 646
BssECI	CCNNGG	3 cut(s)	303, 424, 937
BssHII	GCGCGC	1 cut(s)	637
BssMI	GATC	3 cut(s)	285, 439, 604
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	553, 715, 754, 938
Bst6I	CTCTTC	2 cut(s)	469, 647
BstAFI	CTTAAG	1 cut(s)	671
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	639, 966
BstDEI	CTNAG	7 cut(s)	61, 155, 228, 411, 461, 828, 1032
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	2 cut(s)	703, 736
BstFNI	CGCG	3 cut(s)	453, 637, 639
BstHHI	GCGC	2 cut(s)	639, 641
BstKTI	GATC	3 cut(s)	288, 442, 607
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	3 cut(s)	285, 439, 604
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	1 cut(s)	850
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	1001
BstSCI	CCNGG	2 cut(s)	117, 424
BstSFI	CTRYAG	2 cut(s)	552, 842
BstUI	CGCG	3 cut(s)	453, 637, 639
BstV2I	GAAGAC	2 cut(s)	230, 777
BsuRI	GGCC	2 cut(s)	106, 117
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	2 cut(s)	703, 736
BtsI	GCAGTG	2 cut(s)	839, 1024
BtsIMutI	CAGTG	5 cut(s)	145, 521, 653, 839, 1024
BveI	ACCTGC	1 cut(s)	959
Cac8I	GCNNGC	2 cut(s)	639, 966
CfoI	GCGC	2 cut(s)	639, 641
Cfr13I	GGNCC	4 cut(s)	78, 105, 307, 920
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	803, 833, 998, 1043
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	7 cut(s)	61, 155, 228, 411, 461, 828, 1032
DpnI	GATC	3 cut(s)	287, 441, 606
DpnII	GATC	3 cut(s)	285, 439, 604
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	2 cut(s)	469, 647
EarI	CTCTTC	2 cut(s)	469, 647
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	649
Eco47I	GGWCC	3 cut(s)	78, 307, 920
EcoRI	GAATTC	1 cut(s)	819
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	1044
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	806, 836, 1001, 1046
FaiI	YATR	7 cut(s)	245, 359, 501, 804, 834, 999, 1044
FatI	CATG	4 cut(s)	802, 832, 997, 1042
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	952, 1025
FokI	GGATG	2 cut(s)	710, 723
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	2 cut(s)	952, 1025
FspBI	CTAG	3 cut(s)	581, 869, 891
GlaI	GCGC	2 cut(s)	638, 640
GluI	GCNGC	2 cut(s)	952, 1025
HaeIII	GGCC	2 cut(s)	106, 117
HapII	CCGG	2 cut(s)	118, 695
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	639, 641
Hin1II	CATG	4 cut(s)	806, 836, 1001, 1046
Hin6I	GCGC	2 cut(s)	637, 639
HinP1I	GCGC	2 cut(s)	637, 639
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	6 cut(s)	65, 260, 333, 683, 724, 878
HpaII	CCGG	2 cut(s)	118, 695
HphI	GGTGA	5 cut(s)	200, 224, 289, 770, 921
Hpy166II	GTNNAC	2 cut(s)	574, 703
Hpy188I	TCNGA	7 cut(s)	64, 78, 269, 469, 624, 994, 1033
Hpy8I	GTNNAC	2 cut(s)	574, 703
HpyAV	CCTTC	3 cut(s)	93, 671, 1038
HpyCH4III	ACNGT	4 cut(s)	553, 715, 754, 938
HpyCH4V	TGCA	5 cut(s)	277, 368, 746, 844, 1042
HpyF10VI	GCNNNNNNNGC	1 cut(s)	850
HpyF3I	CTNAG	7 cut(s)	61, 155, 228, 411, 461, 828, 1032
Hsp92II	CATG	4 cut(s)	806, 836, 1001, 1046
HspAI	GCGC	2 cut(s)	637, 639
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	285, 439, 604
LmnI	GCTCC	2 cut(s)	296, 850
LweI	GCATC	3 cut(s)	306, 877, 963
MaeI	CTAG	3 cut(s)	581, 869, 891
MaeIII	GTNAC	6 cut(s)	188, 295, 589, 758, 927, 971
MalI	GATC	3 cut(s)	287, 441, 606
MboI	GATC	3 cut(s)	285, 439, 604
MboII	GAAGA	6 cut(s)	6, 235, 486, 664, 782, 956
MfeI	CAATTG	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	8 cut(s)	23, 237, 272, 345, 544, 663, 819, 1006
MlyI	GAGTC	3 cut(s)	59, 254, 872
MnlI	CCTC	9 cut(s)	58, 138, 208, 322, 470, 501, 624, 840, 1027
Mph1103I	ATGCAT	1 cut(s)	1044
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	671
MspI	CCGG	2 cut(s)	118, 695
MspR9I	CCNGG	2 cut(s)	119, 426
MunI	CAATTG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	3 cut(s)	453, 637, 639
MwoI	GCNNNNNNNGC	1 cut(s)	850
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	285, 439, 604
NlaIII	CATG	4 cut(s)	806, 836, 1001, 1046
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	4 cut(s)	188, 295, 758, 927
NsiI	ATGCAT	1 cut(s)	1044
NspI	RCATGY	1 cut(s)	1001
NspV	TTCGAA	1 cut(s)	817
PauI	GCGCGC	1 cut(s)	637
PctI	GAATGC	1 cut(s)	910
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	333, 683, 724
PflFI	GACNNNGTC	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	953, 1026
PleI	GAGTC	3 cut(s)	59, 254, 872
PpsI	GAGTC	3 cut(s)	59, 254, 872
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	78, 105, 307, 920
PstI	CTGCAG	1 cut(s)	846
PsyI	GACNNNGTC	1 cut(s)	453
PteI	GCGCGC	1 cut(s)	637
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	2 cut(s)	952, 1025
Sau3AI	GATC	3 cut(s)	285, 439, 604
Sau96I	GGNCC	4 cut(s)	78, 105, 307, 920
SchI	GAGTC	3 cut(s)	59, 254, 872
ScrFI	CCNGG	2 cut(s)	119, 426
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	3 cut(s)	306, 877, 963
SfcI	CTRYAG	2 cut(s)	552, 842
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	3 cut(s)	78, 307, 920
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	494, 671
SmoI	CTYRAG	2 cut(s)	494, 671
Sse9I	AATT	8 cut(s)	23, 237, 272, 345, 544, 663, 819, 1006
SsiI	CCGC	6 cut(s)	421, 453, 564, 577, 952, 1025
SspMI	CTAG	3 cut(s)	581, 869, 891
StyD4I	CCNGG	2 cut(s)	117, 424
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	4 cut(s)	553, 715, 754, 938
TaqI	TCGA	5 cut(s)	50, 151, 314, 336, 817
TasI	AATT	8 cut(s)	23, 237, 272, 345, 544, 663, 819, 1006
TauI	GCSGC	2 cut(s)	954, 1027
TfiI	GAWTC	3 cut(s)	333, 683, 724
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	5 cut(s)	145, 528, 653, 846, 1024
TseFI	GTSAC	4 cut(s)	188, 295, 758, 927
Tsp45I	GTSAC	4 cut(s)	188, 295, 758, 927
TspDTI	ATGAA	2 cut(s)	849, 999
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	5 cut(s)	145, 528, 653, 846, 1024
Tth111I	GACNNNGTC	1 cut(s)	453
Vha464I	CTTAAG	1 cut(s)	671
VpaK11BI	GGWCC	3 cut(s)	78, 307, 920
XapI	RAATTY	3 cut(s)	544, 819, 1006
XceI	RCATGY	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	3 cut(s)	581, 869, 891
Zsp2I	ATGCAT	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.