Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012484

Physical Location & Seq

Genomic Coordinates Reverse (-)

721835 .. 724817

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCTTCCATTTCGACACTCCAAGTCCTTCCCTTTCCGCTCTCACATTTGGTCTCAAAGCATCGAACCCCTTCCCTCCTGCTGAAGCTTAGACCCGAATTCGGGTCAAGAAATGGTGAGCTCAGCTGGGCTGGACGATTAATATCCAGTCAGAGGTTTCTATTGAAAGCCATTGACGGCTCGGTTAGCTCCTCTGCTGGTCAAGACCAGAGTCTCCGTAATGATGGGGTAGTGAAGAGTAAGAACAAAAATGGCATAAATCTCAAAGACTCTGTTGGCAAATTGCACGGAATTATCAGCTCCTTCTCTCCCGTCGTCTACTCGATGCGGCAAAGAGTGGGATCCAATTTGGCAATTGGTTTATGTATTGCAGCTGCATTTTTGGTCATTGCTTTGAGAGTGTATGCGGTGAGGAAATCAAAGTACAATCGTCCTGGCTCTGTAGCTGATCTCGTTAGACGTGGCCAGCTTAGATCTGATAGAAGAGGCATTTCACAGCCTCTCAAGTATGATGACCCATTCAATAATCCATTGGTTAAGGTTGGTAAAGGCAATTCAACTGTAGAGATGTGCGGAAAGGTTTATCGCCTAGCCCCGGTTACCCTTACAAAAGAGCAGCAAGCTGTCCATCAGAAAAGGAGATCACGGGCTTACCAGTGGAAGAGACCGACAATATTCCTAAAGGAAGGGGAATCAATACCTCTTGATGTTGACCCTGATACGGTTAGGTGGATTCCTGCCAATCATCCTTTTGCAACCACTGCCGGTGACATTGATGAAGACTTAGCACAAAATAATGTGTACCAGAAACATGGTGTTCCCTTTCGAATTCAAGCTGAGCATGAAGCACTGCAGAGGGAGCAAAAGCTGAACAGGCTAGTGATGGACTCTAGCAATGATAGTGATTTTGTGAAAGCATTCAAGTCAGGTCCCAAGTCACCTGAGCATGGAGAAGAAAGCCCCATCAATAATCAAGCTGGTAACTCCAAGCCGCCGTTGTCAGAATGTGGCCCAAATTCCTTTGGAATTATGTCGCCGTCTGAGGAAACACATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016043 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

353

Amino Acids

38.9

Weight (kDa)

9.76

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20830 AT1G20830
fragaria_vesca	FvH4_5g25940
malus_domestica	MD06G1005200.v1.1
prunus_persica	Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1 Prupe.5G006400_v2.0.a1
pyrus_communis	pycom06g00490
rosa_chinensis	RchiOBHm_Chr4g0410601 RchiOBHm_Chr7g0216471
rosa_laevigata	RLG00000002568
rosa_multiflora	Rmu_ssc0000454.1_g000026
rosa_roxburghii	Rroxscaffold_3G00243210
rosa_rugosa	Rorug07G0160500
rosa_samantha	Rh4CG174600 Rh7AG299700 Rh7BG291200 Rh7DG301000
rosa_wichuraiana	Rw7G025470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	5 cut(s)	38, 328, 407, 573, 992
AclWI	GGATC	2 cut(s)	336, 349
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	98, 828, 1015
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	2 cut(s)	425, 803
AfiI	CCNNNNNNNGG	6 cut(s)	101, 102, 153, 595, 721, 947
AgsI	TTSAA	5 cut(s)	166, 523, 558, 833, 922
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	3 cut(s)	58, 218, 658
AlwI	GGATC	2 cut(s)	336, 349
AoxI	GGCC	2 cut(s)	463, 1009
ApeKI	GCWGC	3 cut(s)	371, 374, 616
ApoI	RAATTY	3 cut(s)	98, 828, 1015
AseI	ATTAAT	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	70, 917
AspS9I	GGNCC	2 cut(s)	929, 1010
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	4 cut(s)	128, 421, 779, 930
AsuII	TTCGAA	1 cut(s)	826
AvaII	GGWCC	1 cut(s)	929
BalI	TGGCCA	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	361, 383, 628
BccI	CCATC	4 cut(s)	218, 636, 877, 971
BceAI	ACGGC	3 cut(s)	193, 979, 1021
BciT130I	CCWGG	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	58, 218, 658
BfaI	CTAG	3 cut(s)	590, 878, 891
BfmI	CTRYAG	3 cut(s)	441, 561, 851
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	5 cut(s)	329, 372, 375, 617, 992
BlpI	GCTNAGC	2 cut(s)	122, 837
BlsI	GCNGC	5 cut(s)	330, 373, 376, 618, 993
Bme1390I	CCNGG	2 cut(s)	435, 596
Bme18I	GGWCC	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	929, 1010
BmiI	GGNNCC	2 cut(s)	343, 931
BmrFI	CCNGG	2 cut(s)	435, 596
BmsI	GCATC	2 cut(s)	70, 315
BoxI	GACNNNNGTC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	942
Bpu1102I	GCTNAGC	2 cut(s)	122, 837
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	142
BsaI	GGTCTC	2 cut(s)	58, 658
BsaJI	CCNNGG	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	6 cut(s)	101, 102, 153, 595, 721, 947
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	2 cut(s)	147, 655
Bse3DI	GCAATG	2 cut(s)	387, 901
Bse8I	GATNNNNATC	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	745
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	6 cut(s)	101, 102, 153, 595, 721, 947
BseMI	GCAATG	2 cut(s)	387, 901
BseMII	CTCAG	4 cut(s)	136, 828, 933, 1032
BseNI	ACTGG	2 cut(s)	147, 655
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	361, 383, 628
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	2 cut(s)	465, 1011
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	596, 765
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	6 cut(s)	101, 102, 153, 595, 721, 947
BsmAI	GTCTC	3 cut(s)	58, 218, 658
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	2 cut(s)	465, 1011
Bso31I	GGTCTC	2 cut(s)	58, 658
Bsp119I	TTCGAA	1 cut(s)	826
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	341, 448, 473, 641
Bsp1720I	GCTNAGC	2 cut(s)	122, 837
BspACI	CCGC	5 cut(s)	38, 328, 407, 573, 992
BspANI	GGCC	2 cut(s)	465, 1011
BspCNI	CTCAG	4 cut(s)	135, 829, 934, 1033
BspLI	GGNNCC	2 cut(s)	343, 931
BspMAI	CTGCAG	1 cut(s)	855
BspPI	GGATC	2 cut(s)	336, 349
BspT104I	TTCGAA	1 cut(s)	826
BspTNI	GGTCTC	2 cut(s)	58, 658
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	2 cut(s)	387, 901
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	2 cut(s)	147, 655
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	4 cut(s)	341, 448, 473, 641
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	562, 724
Bst6I	CTCTTC	3 cut(s)	230, 478, 656
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	467, 621
BstDEI	CTNAG	7 cut(s)	89, 122, 470, 784, 837, 942, 1041
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	745
BstKTI	GATC	4 cut(s)	344, 451, 476, 644
BstMAI	GTCTC	3 cut(s)	58, 218, 658
BstMBI	GATC	4 cut(s)	341, 448, 473, 641
BstMWI	GCNNNNNNNGC	4 cut(s)	186, 761, 859, 874
BstNI	CCWGG	1 cut(s)	435
BstPAI	GACNNNNGTC	1 cut(s)	210
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	2 cut(s)	433, 594
BstSFI	CTRYAG	3 cut(s)	441, 561, 851
BstV1I	GCAGC	3 cut(s)	361, 383, 628
BstV2I	GAAGAC	1 cut(s)	786
BstX2I	RGATCY	2 cut(s)	341, 473
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	2 cut(s)	341, 473
BsuRI	GGCC	2 cut(s)	465, 1011
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	745
BtsI	GCAGTG	2 cut(s)	759, 848
BtsIMutI	CAGTG	3 cut(s)	662, 759, 848
Cac8I	GCNNGC	2 cut(s)	467, 621
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	2 cut(s)	929, 1010
Csp6I	GTAC	2 cut(s)	424, 802
CviAII	CATG	4 cut(s)	812, 842, 947, 1052
CviQI	GTAC	2 cut(s)	424, 802
DdeI	CTNAG	7 cut(s)	89, 122, 470, 784, 837, 942, 1041
DpnI	GATC	4 cut(s)	343, 450, 475, 643
DpnII	GATC	4 cut(s)	341, 448, 473, 641
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	3 cut(s)	230, 478, 656
EarI	CTCTTC	3 cut(s)	230, 478, 656
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco31I	GGTCTC	2 cut(s)	58, 658
Eco47I	GGWCC	1 cut(s)	929
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	104
Eco91I	GGTNACC	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	929
EcoO65I	GGTNACC	1 cut(s)	598
EcoRI	GAATTC	2 cut(s)	98, 828
EcoRII	CCWGG	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	4 cut(s)	815, 845, 950, 1055
FaiI	YATR	9 cut(s)	257, 364, 405, 510, 813, 843, 948, 1031, 1053
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	4 cut(s)	811, 841, 946, 1051
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	5 cut(s)	329, 372, 375, 617, 992
FokI	GGATG	1 cut(s)	732
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	5 cut(s)	329, 372, 375, 617, 992
FspBI	CTAG	3 cut(s)	590, 878, 891
GluI	GCNGC	5 cut(s)	329, 372, 375, 617, 992
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	465, 1011
HapII	CCGG	2 cut(s)	596, 765
Hin1II	CATG	4 cut(s)	815, 845, 950, 1055
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	5 cut(s)	211, 269, 692, 733, 887
HpaII	CCGG	2 cut(s)	596, 765
HphI	GGTGA	4 cut(s)	128, 421, 779, 930
Hpy166II	GTNNAC	3 cut(s)	319, 712, 802
Hpy188I	TCNGA	5 cut(s)	153, 478, 633, 1003, 1042
Hpy188III	TCNNGA	3 cut(s)	108, 203, 704
Hpy8I	GTNNAC	3 cut(s)	319, 712, 802
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	4 cut(s)	38, 81, 313, 680
HpyCH4III	ACNGT	2 cut(s)	562, 724
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	286, 371, 377, 755, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	186, 761, 859, 874
HpyF3I	CTNAG	7 cut(s)	89, 122, 470, 784, 837, 942, 1041
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	4 cut(s)	815, 845, 950, 1055
Kzo9I	GATC	4 cut(s)	341, 448, 473, 641
LmnI	GCTCC	3 cut(s)	194, 305, 859
Lsp1109I	GCAGC	3 cut(s)	361, 383, 628
LweI	GCATC	2 cut(s)	70, 315
MaeI	CTAG	3 cut(s)	590, 878, 891
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	4 cut(s)	598, 767, 936, 980
MalI	GATC	4 cut(s)	343, 450, 475, 643
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	4 cut(s)	341, 448, 473, 641
MboII	GAAGA	5 cut(s)	247, 495, 673, 791, 965
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	341, 473
MhlI	GDGCHC	1 cut(s)	123
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	9 cut(s)	98, 281, 291, 346, 354, 553, 828, 1015, 1026
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	3 cut(s)	220, 263, 881
MnlI	CCTC	9 cut(s)	86, 147, 202, 405, 479, 510, 711, 849, 1036
Mox20I	TGGCCA	1 cut(s)	465
MroXI	GAANNNNTTC	2 cut(s)	70, 917
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	2 cut(s)	140, 537
Msp20I	TGGCCA	1 cut(s)	465
MspA1I	CMGCKG	2 cut(s)	126, 374
MspI	CCGG	2 cut(s)	596, 765
MspR9I	CCNGG	2 cut(s)	435, 596
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	186, 761, 859, 874
NciI	CCSGG	1 cut(s)	596
NdeII	GATC	4 cut(s)	341, 448, 473, 641
NlaIII	CATG	4 cut(s)	815, 845, 950, 1055
NlaIV	GGNNCC	2 cut(s)	343, 931
NmuCI	GTSAC	2 cut(s)	767, 936
NspV	TTCGAA	1 cut(s)	826
PctI	GAATGC	1 cut(s)	917
PdmI	GAANNNNTTC	2 cut(s)	70, 917
PfeI	GAWTC	2 cut(s)	692, 733
PkrI	GCNGC	5 cut(s)	330, 373, 376, 618, 993
PleI	GAGTC	3 cut(s)	219, 263, 881
PpsI	GAGTC	3 cut(s)	219, 263, 881
PpuMI	RGGWCCY	1 cut(s)	929
PshAI	GACNNNNGTC	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	433
PspEI	GGTNACC	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	343, 931
PspPI	GGNCC	2 cut(s)	929, 1010
PspPPI	RGGWCCY	1 cut(s)	929
PstI	CTGCAG	1 cut(s)	855
PsuI	RGATCY	2 cut(s)	341, 473
PvuII	CAGCTG	2 cut(s)	126, 374
RsaI	GTAC	2 cut(s)	425, 803
RsaNI	GTAC	2 cut(s)	424, 802
SacI	GAGCTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	140, 537
SatI	GCNGC	5 cut(s)	329, 372, 375, 617, 992
Sau3AI	GATC	4 cut(s)	341, 448, 473, 641
Sau96I	GGNCC	2 cut(s)	929, 1010
SchI	GAGTC	3 cut(s)	220, 263, 881
ScrFI	CCNGG	2 cut(s)	435, 596
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	2 cut(s)	70, 315
SfcI	CTRYAG	3 cut(s)	441, 561, 851
SfuI	TTCGAA	1 cut(s)	826
SinI	GGWCC	1 cut(s)	929
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	9 cut(s)	98, 281, 291, 346, 354, 553, 828, 1015, 1026
SsiI	CCGC	5 cut(s)	38, 328, 407, 573, 992
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	3 cut(s)	590, 878, 891
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	433, 594
TaaI	ACNGT	2 cut(s)	562, 724
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	4 cut(s)	14, 64, 323, 826
TaqII	GACCGA	1 cut(s)	682
TasI	AATT	9 cut(s)	98, 281, 291, 346, 354, 553, 828, 1015, 1026
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	2 cut(s)	331, 994
TfiI	GAWTC	2 cut(s)	692, 733
Tru1I	TTAA	2 cut(s)	140, 537
Tru9I	TTAA	2 cut(s)	140, 537
TscAI	CASTG	3 cut(s)	662, 766, 855
TseFI	GTSAC	2 cut(s)	767, 936
TseI	GCWGC	3 cut(s)	371, 374, 616
Tsp45I	GTSAC	2 cut(s)	767, 936
TspDTI	ATGAA	2 cut(s)	792, 858
TspGWI	ACGGA	2 cut(s)	206, 303
TspRI	CASTG	3 cut(s)	662, 766, 855
VpaK11BI	GGWCC	1 cut(s)	929
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	3 cut(s)	98, 828, 1015
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	70, 917
XspI	CTAG	3 cut(s)	590, 878, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.