Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

12788550 .. 12791420

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGTCGCCGAGCAAACGCCGGGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTTTTTGTGGATTTCAATGGACCCAAAGAGAGTCCTTATCAGGGAGGTGTGTGGAGGATACGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATAGGCTTTGTCAACAAGATCTACCACCCAAATGTTGATGAAATGTCGGGATCAGTTTGTTTAGATGTTATCAACCAGACTTGGAGTCCCATGTTTGATCTGGTTAATGTGTTTGAAGTCTTTCTTCCGCAACTTCTTTTATATCCAAATCCATCGGATCCCTTGAACGGAGAAGCTGCTGCTCTGATGATGCGTGATCGGACTGCTTATGAGCAAAGAGTAAAAGAGTTCTGCGAGAAATACGCAAAGCCAGAAGATATAGGAGCTGCCCAAGAAGAGAAATCCAGTGATGAAGAGCTGAGTGAAGATGAATATGCCTCCAGTGATGATGAGGCAGTTGCAGGCAAAGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

184

Amino Acids

20.95

Weight (kDa)

4.35

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AciI	CCGC	1 cut(s)	323
AclWI	GGATC	4 cut(s)	253, 347, 360, 542
AfiI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AhdI	GACNNNNNGTC	1 cut(s)	279
AluBI	AGCT	5 cut(s)	163, 371, 461, 493, 545
AluI	AGCT	5 cut(s)	163, 371, 461, 493, 545
AlwI	GGATC	4 cut(s)	253, 347, 360, 542
ApeKI	GCWGC	3 cut(s)	371, 374, 461
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	358, 361, 448
BccI	CCATC	4 cut(s)	22, 74, 199, 355
BciVI	GTATCC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	144
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 354
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	160, 375
BpmI	CTGGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
Bse1I	ACTGG	2 cut(s)	480, 516
Bse8I	GATNNNNATC	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	480, 516
BseXI	GCAGC	3 cut(s)	358, 361, 448
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BsmFI	GGGAC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
BspACI	CCGC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	115, 354
BspPI	GGATC	4 cut(s)	253, 347, 360, 542
BspQI	GCTCTTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	480, 516
BssMI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
Bst6I	CTCTTC	2 cut(s)	465, 483
BstC8I	GCNNGC	2 cut(s)	86, 538
BstDEI	CTNAG	1 cut(s)	494
BstKTI	GATC	7 cut(s)	75, 216, 248, 295, 355, 394, 550
BstMBI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	358, 361, 448
BstX2I	RGATCY	2 cut(s)	213, 352
BstYI	RGATCY	2 cut(s)	213, 352
BsuI	GTATCC	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	487, 523
Cac8I	GCNNGC	2 cut(s)	86, 538
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	2 cut(s)	85, 286
CviJI	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
CviKI_1	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	7 cut(s)	74, 215, 247, 294, 354, 393, 549
DpnII	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
DriI	GACNNNNNGTC	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	465, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	2 cut(s)	465, 483
Eco47I	GGWCC	1 cut(s)	113
FaeI	CATG	2 cut(s)	88, 289
FaiI	YATR	9 cut(s)	86, 183, 197, 287, 337, 405, 455, 510, 553
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	84, 285
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
GluI	GCNGC	3 cut(s)	372, 375, 462
GsuI	CTGGAG	1 cut(s)	499
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	88, 289
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 280
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	352, 381, 396
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	88, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	88, 289
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	160, 458
LpnPI	CCDG	9 cut(s)	35, 119, 180, 281, 284, 459, 493, 522, 529
Lsp1109I	GCAGC	3 cut(s)	358, 361, 448
LweI	GCATC	2 cut(s)	160, 375
MalI	GATC	7 cut(s)	74, 215, 247, 294, 354, 393, 549
MboI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
MboII	GAAGA	5 cut(s)	311, 461, 482, 500, 512
MflI	RGATCY	2 cut(s)	213, 352
MlyI	GAGTC	2 cut(s)	133, 289
MnlI	CCTC	4 cut(s)	131, 141, 520, 523
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
NlaIII	CATG	2 cut(s)	88, 289
NlaIV	GGNNCC	2 cut(s)	115, 354
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	315
PkrI	GCNGC	3 cut(s)	373, 376, 463
PleI	GAGTC	2 cut(s)	132, 288
PpsI	GAGTC	2 cut(s)	132, 288
PsiI	TTATAA	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	115, 354
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	213, 352
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 289
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	7 cut(s)	66, 142, 165, 373, 463, 495, 547
SfaNI	GCATC	2 cut(s)	160, 375
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	88
SsiI	CCGC	1 cut(s)	323
StyD4I	CCNGG	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	487, 523
TseI	GCWGC	3 cut(s)	371, 374, 461
TspDTI	ATGAA	4 cut(s)	53, 249, 501, 519
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	487, 523
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.