Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034485.1

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 574

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 574 bp

caccaactttgtgtttgccatccgatcactgtacggtactctcagcggcaatggaatcgcctttgtcatcgctccgacgagaggccttcccggagctctgccgaaccagtacctgagcctgttcaacccctccaacaatgggaatttcaccaatcgtgtttttgctgtggagcttgacacggtcaagaacgcggaattcagtgacatcaatgataaccatgttgggatagacatcaatggcttgcactctgtccaagctgctccagctggttattttgttggtcagtacttcaagaacctgactcttaacaatggtaaagaaatgagagtctgggttgaatatgatggtaccaacaagcaaattgaagttactatggctccagttgctgttgcaactaaacccccaattccacttttgtctttgaaatatgacctttccccaattctcaacaaaaccatgtatgtcggcttttcctcttcaactggtacgtttctcacatcccattatgtagtgggttggagctttaggatgaatggccaagctcaagaccttatagcttccaaacttcccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

20.87

Weight (kDa)

8.8

Isoelectric Point (pI)

21.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	348
AccII	CGCG	1 cut(s)	192
AciI	CCGC	2 cut(s)	46, 192
AcoI	YGGCCR	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	143, 195
AfaI	GTAC	6 cut(s)	33, 38, 111, 288, 350, 488
AfiI	CCNNNNNNNGG	2 cut(s)	81, 139
AgsI	TTSAA	6 cut(s)	125, 293, 339, 366, 425, 481
AluBI	AGCT	7 cut(s)	96, 173, 258, 267, 523, 543, 558
AluI	AGCT	7 cut(s)	96, 173, 258, 267, 523, 543, 558
Alw21I	GWGCWC	1 cut(s)	98
AlwNI	CAGNNNCTG	2 cut(s)	113, 387
AoxI	GGCC	2 cut(s)	83, 536
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	2 cut(s)	143, 195
Asp718I	GGTACC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	27, 339
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BcnI	CCSGG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	47, 259
BlsI	GCNGC	2 cut(s)	48, 260
BmcAI	AGTACT	1 cut(s)	288
Bme1390I	CCNGG	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	350, 379
BmrFI	CCNGG	1 cut(s)	91
BpmI	CTGGAG	2 cut(s)	247, 364
Bpu10I	CCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 139
Bse1I	ACTGG	3 cut(s)	107, 381, 488
Bse3DI	GCAATG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	231
BseGI	GGATG	3 cut(s)	19, 498, 535
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	81, 139
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	56, 105
BseNI	ACTGG	3 cut(s)	107, 381, 488
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	85, 538
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	91
BslI	CCNNNNNNNGG	2 cut(s)	81, 139
BsnI	GGCC	2 cut(s)	85, 538
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	46, 192
BspANI	GGCC	2 cut(s)	85, 538
BspCNI	CTCAG	2 cut(s)	55, 106
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	350, 379
BspT107I	GGYRCC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	107, 381, 488
BssMI	GATC	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	31, 36, 182
Bst6I	CTCTTC	1 cut(s)	482
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	42, 114
BstF5I	GGATG	3 cut(s)	19, 498, 535
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 384
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	85, 538
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	19, 498, 535
BtsIMutI	CAGTG	2 cut(s)	27, 206
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	2 cut(s)	113, 387
Csp6I	GTAC	6 cut(s)	32, 37, 110, 287, 349, 487
CviAII	CATG	2 cut(s)	219, 458
CviQI	GTAC	6 cut(s)	32, 37, 110, 287, 349, 487
DdeI	CTNAG	2 cut(s)	42, 114
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Ecl136II	GAGCTC	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	98
Eco53kI	GAGCTC	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	98
FaeI	CATG	2 cut(s)	222, 461
FaiI	YATR	8 cut(s)	220, 343, 375, 430, 459, 463, 508, 555
FatI	CATG	2 cut(s)	218, 457
Fnu4HI	GCNGC	2 cut(s)	47, 259
FokI	GGATG	3 cut(s)	6, 485, 542
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	47, 259
GluI	GCNGC	2 cut(s)	47, 259
GsuI	CTGGAG	2 cut(s)	247, 364
HaeIII	GGCC	2 cut(s)	85, 538
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	2 cut(s)	222, 461
HinfI	GANTC	3 cut(s)	55, 302, 328
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	24, 76
Hpy188III	TCNNGA	3 cut(s)	185, 293, 546
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	3 cut(s)	31, 36, 182
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	2 cut(s)	245, 393
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 384
HpyF3I	CTNAG	2 cut(s)	42, 114
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	222, 461
KpnI	GGTACC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	6 cut(s)	77, 93, 170, 266, 383, 520
Lsp1109I	GCAGC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	201, 368
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	98
MlsI	TGGCCA	1 cut(s)	538
MluCI	AATT	5 cut(s)	143, 195, 361, 406, 442
MluNI	TGGCCA	1 cut(s)	538
MlyI	GAGTC	2 cut(s)	296, 337
MmeI	TCCRAC	3 cut(s)	99, 157, 498
MnlI	CCTC	3 cut(s)	75, 140, 485
Mox20I	TGGCCA	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	538
MseI	TTAA	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	538
MspA1I	CMGCKG	2 cut(s)	46, 267
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	264, 384
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	222, 461
NlaIV	GGNNCC	2 cut(s)	350, 379
NmuCI	GTSAC	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	55
PflFI	GACNNNGTC	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	48, 260
PleI	GAGTC	2 cut(s)	296, 336
PpsI	GAGTC	2 cut(s)	296, 336
Psp124BI	GAGCTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	350, 379
PstNI	CAGNNNCTG	2 cut(s)	113, 387
PsyI	GACNNNGTC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	267
RsaI	GTAC	6 cut(s)	33, 38, 111, 288, 350, 488
RsaNI	GTAC	6 cut(s)	32, 37, 110, 287, 349, 487
SacI	GAGCTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	2 cut(s)	47, 259
Sau3AI	GATC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	288
SchI	GAGTC	2 cut(s)	296, 337
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	5 cut(s)	143, 195, 361, 406, 442
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	46, 192
SstI	GAGCTC	1 cut(s)	98
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	3 cut(s)	31, 36, 182
TaiI	ACGT	1 cut(s)	492
TasI	AATT	5 cut(s)	143, 195, 361, 406, 442
TatI	WGTACW	1 cut(s)	286
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	2 cut(s)	34, 206
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	34, 206
Tth111I	GACNNNGTC	1 cut(s)	180
XapI	RAATTY	2 cut(s)	143, 195
ZrmI	AGTACT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.