Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

6166472 .. 6183969

Gene Structure 17498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0078800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAATATGAAAGCAAAATGAGGGGTGCCCAGAGAATGGCGTTCAACCCTGTGGTTGGTGGAGGGCCTAATGCTAGTGTAATACATTATTCTCGAAATGATCAGAAAATAAAGGAAGGAGATCTTGTCTTGATGGATGTTGGTTGCGAATTTCATGGTTATGTCAGTGATCTAACCCGCACCTGGCCACCCTGTGGTAGCTTTTCTTCAGCTCAAGAAGAGCTATATGATCTTATTCTGCAAACAAACAAGGAATGCGTGAAGCTTTGCAAACCTGGTGCTACCATTCGGCAAATACACAACTTTTCTGTTGACATGCTTCAAAAAGGACTCAAGGAGATTGGGATTCTGAAGGAGGACTCTAGACGTAGTTCCCATTATCAGCTGAGCCGTTCCTACCATCAGCTGAACCCTACTTCCATAGGTTTCTCTATCCATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

7.72

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	4 - 118	1.1e-31	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AccB7I	CCANNNNNTGG	2 cut(s)	37, 194
AciI	CCGC	1 cut(s)	178
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	2 cut(s)	192, 371
AdeI	CACNNNGTG	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	37, 56, 183, 194
AgsI	TTSAA	2 cut(s)	46, 323
AjnI	CCWGG	2 cut(s)	182, 274
AloI	GAACNNNNNNTCC	2 cut(s)	401, 433
AluBI	AGCT	6 cut(s)	201, 212, 223, 265, 385, 406
AluI	AGCT	6 cut(s)	201, 212, 223, 265, 385, 406
AoxI	GGCC	2 cut(s)	65, 185
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	26
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BccI	CCATC	2 cut(s)	127, 408
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	2 cut(s)	184, 276
BclI	TGATCA	1 cut(s)	100
BfaI	CTAG	3 cut(s)	75, 363, 442
BglII	AGATCT	1 cut(s)	121
BlpI	GCTNAGC	1 cut(s)	386
Bme1390I	CCNGG	2 cut(s)	184, 276
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	184, 276
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	198, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 56, 183, 194
BseBI	CCWGG	2 cut(s)	184, 276
BseGI	GGATG	2 cut(s)	142, 436
BseLI	CCNNNNNNNGG	4 cut(s)	37, 56, 183, 194
BseMII	CTCAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	31
BshFI	GGCC	2 cut(s)	67, 187
BshNI	GGYRCC	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	37, 56, 183, 194
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	67, 187
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	100, 121, 169, 229
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	67, 187
BspCNI	CTCAG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	26
BssMI	GATC	4 cut(s)	100, 121, 169, 229
Bst2UI	CCWGG	2 cut(s)	184, 276
Bst6I	CTCTTC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	142, 436
BstKTI	GATC	4 cut(s)	103, 124, 172, 232
BstMBI	GATC	4 cut(s)	100, 121, 169, 229
BstNI	CCWGG	2 cut(s)	184, 276
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	182, 274
BstSLI	GKGCMC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	67, 187
BtsCI	GGATG	2 cut(s)	142, 436
BtsIMutI	CAGTG	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	65
CsiI	ACCWGGT	1 cut(s)	274
CviAII	CATG	2 cut(s)	155, 316
CviJI	RGCY	9 cut(s)	67, 187, 201, 212, 223, 265, 385, 390, 406
CviKI_1	RGCY	9 cut(s)	67, 187, 201, 212, 223, 265, 385, 390, 406
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	4 cut(s)	102, 123, 171, 231
DpnII	GATC	4 cut(s)	100, 121, 169, 229
DraIII	CACNNNGTG	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	192, 371
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	182, 274
FaeI	CATG	2 cut(s)	158, 319
FaiI	YATR	7 cut(s)	9, 156, 162, 226, 228, 317, 422
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	2 cut(s)	154, 315
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	100
FokI	GGATG	2 cut(s)	149, 423
FspBI	CTAG	3 cut(s)	75, 363, 442
HaeIII	GGCC	2 cut(s)	67, 187
Hin1II	CATG	2 cut(s)	158, 319
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	3 cut(s)	330, 346, 359
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	105, 351
Hpy188III	TCNNGA	4 cut(s)	93, 130, 215, 363
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	110, 346
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	2 cut(s)	241, 270
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	158, 319
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	100, 121, 169, 229
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	44, 63, 169, 196, 205, 261, 288
MabI	ACCWGGT	1 cut(s)	274
MaeI	CTAG	3 cut(s)	75, 363, 442
MaeII	ACGT	1 cut(s)	367
MalI	GATC	4 cut(s)	102, 123, 171, 231
MboI	GATC	4 cut(s)	100, 121, 169, 229
MboII	GAAGA	2 cut(s)	198, 230
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	324, 353
MnlI	CCTC	3 cut(s)	15, 56, 349
Mox20I	TGGCCA	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	187
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	187
MspA1I	CMGCKG	2 cut(s)	385, 406
MspR9I	CCNGG	2 cut(s)	184, 276
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	184, 276
NdeII	GATC	4 cut(s)	100, 121, 169, 229
NlaIII	CATG	2 cut(s)	158, 319
NlaIV	GGNNCC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	2 cut(s)	37, 194
PleI	GAGTC	2 cut(s)	324, 353
PpsI	GAGTC	2 cut(s)	324, 353
Psp6I	CCWGG	2 cut(s)	182, 274
PspGI	CCWGG	2 cut(s)	182, 274
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	121
PvuII	CAGCTG	2 cut(s)	385, 406
RseI	CAYNNNNRTG	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	213
Sau3AI	GATC	4 cut(s)	100, 121, 169, 229
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	2 cut(s)	324, 353
ScrFI	CCNGG	2 cut(s)	184, 276
SduI	GDGCHC	1 cut(s)	31
SexAI	ACCWGGT	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	213, 332
SmoI	CTYRAG	2 cut(s)	213, 332
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	3 cut(s)	75, 363, 442
StyD4I	CCNGG	2 cut(s)	182, 274
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	346
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	24, 143
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	2 cut(s)	37, 194
XapI	RAATTY	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	362
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	3 cut(s)	75, 363, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.