Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

12108273 .. 12110706

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG145800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGTTTGTCAAGCTTTCTGCTCTCCTAGTACTACTAGTACTTCTGGCACCCGCAGAAGCCCAAGACCTCAATTTCATCTACAATGATGGTTTCTCTAGCCGTTCTGGTCTTAATCTAAGTCTAGACGGCATAGCAGAGATCACACCAAAAGGTCTCTTGAAGCTTACGAACCGCACCAAAGAGAGAACTGACAGAACTGGTCATGCCTTCTACCCTAACCCGGTAACCTTCAAAAACTCAGAGAACGACTCCGCTTTCTCCTTCTCCACCACCTTTATCTTTGCCATCCAATCAGAGTACACTACTTTCAGCGGCCATGGAATGGCCTTTTTCATCGCTCCGACGAAAGGCCTCCCCGGAGCTACGTCGAGCCAGTACCTGAGCCTGTTCAACGTCTCCAACAATGGGAATTTCAGCAATCATGTTTTTGCTGTGGAGCTTGACACTATCCAGAACGCGGAATTCAGTGACATCAATGATAACCATGTTGGGATAGACATCAATGGCTTGCGCTCTGTCAAAGCTGCTCCAGCTGGTTATTTTGATGGTCAGTACTTCAAGAACCTGACTCTTATCAGTGGTAAAGAAATGAGAGTTTGGGTTGAATATGATGGTACCAAGAAGCAAATTGAAGTTACTATGGCTCCAATTGCTGTTGCAACTAAACCCCCAACTCCACTTTTGTTTTTGAAATATGACCTTACCCCAATTCTAAAAAAAACCATGTATGTTGGCTTTTCCGCTTCAACTGGTCCGTTCCTCACATCCCATTATGCAGTGGGTTGGAGCTTTAGGATGAATGGCCAAGCTCAAGACCTTATAGCTTCCAAACTTCCCAAGTTGCCTAGCATTGCAGGTAAAAAGAGGTCCATGCTTTTCACCTTTGGTGTGCCTCTGATTTCAGTGAGTTTGGTTTTGCTGGTGGTTTCGGGGATGCTTTATGTCATAAGTAGGAAGAGGAAGTTTGCAGAAGTGCTTGAAGATTGGGAGCTAGAGTATGGTCCTCAGAGGTTTAAATACAAAGAATTGTATATAGCCACCAAAGGGTTTAGGGAAAAGGAGCTTTTGGGAACTGGGGGATTTGGTAAAGTTTATAGAGGTTTATTACCCTCCTCTAAAATTGAGATTGCAGTGAAGAGGGTATCACATGAATCAACACAGGGGACGAAGGAATTTGTAGCAGAAATTGTTAGTATTGGCCGGCTTCGTCACCGGAATTTAGTACAACTGTTGGGATATTGCAGATTATACGACCATGGAACAGACCCTCAAACTACTCAGATAGTTGGAACACTCGGGTACCTAGCTCCAGAGTACACAAGAACAGGTCGGGCCACCACGAGCACCGACGTGTTTGCTTTTGGGGCATTTTTGCTCGAAGTTGCTTGCGGAAAAAGGCCAATTAAGACACAGGGTCCAGAAGATATGATTTTGGTTGCTTGGGTGTTTTCTTGTTGGAATAGAGGTAACATCCTAGAGGCAAGAGATCAAAGCCTTGGTACGGATTTTGTGGCCGAGGAAGTGGAGTTGGTGTTGAAGCTAGGGCTTTTGTGCTATAATTTGGAGCCAGTGGCAAGGCCAAGCATGCGACAAGTTGTTCAGTACTTGGCCGGTGATGTTGCTTTGCCGGAAGTGTCACTTCCCGGGTTTTCTTCTAATGGATTAACGATTGGACACCGTGAAGGTTTTGATGACTATGCTAAGTCGTATCAGTCTTCTTTAGGCAATAAGTTCTCCCATTCATCATATGTTCCAGAGTCGGCACTACTTTCAGGTGGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

594

Amino Acids

65.57

Weight (kDa)

8.8

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	23 - 279	3.1e-81	Legume lectin domain
Lectin_L-type_dom	PF18483	48 - 254	2.3e-06	Legume lectin beta-barrel domain
Pkinase	PF00069	350 - 417	4.7e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	353 - 415	2.5e-09	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	412 - 534	3.2e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	845
Acc65I	GGTACC	2 cut(s)	614, 1299
AccB1I	GGYRCC	3 cut(s)	46, 614, 1299
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccII	CGCG	1 cut(s)	458
AciI	CCGC	7 cut(s)	51, 172, 252, 312, 458, 741, 1389
AcoI	YGGCCR	5 cut(s)	313, 802, 1198, 1512, 1608
AcsI	RAATTY	4 cut(s)	409, 461, 1172, 1216
AfiI	CCNNNNNNNGG	7 cut(s)	220, 322, 347, 405, 457, 1044, 1501
AflIII	ACRYGT	1 cut(s)	1350
AhdI	GACNNNNNGTC	1 cut(s)	1413
AhlI	ACTAGT	1 cut(s)	34
AjiI	CACGTC	1 cut(s)	1351
AleI	CACNNNNGTG	1 cut(s)	1349
Alw21I	GWGCWC	1 cut(s)	1346
Alw26I	GTCTC	2 cut(s)	158, 400
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	2 cut(s)	1295, 1643
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	4 cut(s)	409, 461, 1172, 1216
Asp718I	GGTACC	2 cut(s)	614, 1299
AspLEI	GCGC	1 cut(s)	513
AspS9I	GGNCC	5 cut(s)	752, 867, 1001, 1332, 1415
AsuC2I	CCSGG	4 cut(s)	221, 357, 1644, 1645
AsuHPI	GGTGA	3 cut(s)	871, 1202, 1625
AvaI	CYCGRG	2 cut(s)	1295, 1643
AvaII	GGWCC	4 cut(s)	752, 867, 1001, 1415
BaeI	ACNNNNGTAYC	2 cut(s)	1283, 1316
BalI	TGGCCA	1 cut(s)	804
BanI	GGYRCC	3 cut(s)	46, 614, 1299
BauI	CACGAG	1 cut(s)	1339
BbsI	GAAGAC	1 cut(s)	1707
Bbv12I	GWGCWC	1 cut(s)	1346
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	4 cut(s)	80, 293, 539, 605
BceAI	ACGGC	2 cut(s)	84, 142
BcgI	CGANNNNNNTGC	2 cut(s)	1337, 1371
BcnI	CCSGG	4 cut(s)	221, 357, 1644, 1645
BcoDI	GTCTC	2 cut(s)	158, 400
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	9 cut(s)	26, 35, 96, 122, 846, 992, 1304, 1475, 1541
BfuAI	ACCTGC	1 cut(s)	845
BisI	GCNGC	2 cut(s)	313, 525
BlsI	GCNGC	2 cut(s)	314, 526
BmcAI	AGTACT	4 cut(s)	30, 39, 554, 1604
Bme1390I	CCNGG	4 cut(s)	221, 357, 1644, 1645
Bme18I	GGWCC	4 cut(s)	752, 867, 1001, 1415
BmeRI	GACNNNNNGTC	1 cut(s)	1413
BmeT110I	CYCGRG	2 cut(s)	1295, 1643
BmgBI	CACGTC	1 cut(s)	1351
BmgT120I	GGNCC	5 cut(s)	752, 867, 1001, 1332, 1415
BmiI	GGNNCC	6 cut(s)	48, 616, 645, 1301, 1416, 1566
BmrFI	CCNGG	4 cut(s)	221, 357, 1644, 1645
BmrI	ACTGGG	1 cut(s)	1083
BmsI	GCATC	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	1083
BpiI	GAAGAC	1 cut(s)	1707
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	2 cut(s)	513, 1293
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	795
BpuMI	CCSGG	4 cut(s)	221, 357, 1644, 1645
BsaBI	GATNNNNATC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	6 cut(s)	316, 355, 1255, 1495, 1515, 1643
BsaWI	WCCGGW	1 cut(s)	1212
BsaXI	ACNNNNNCTCC	6 cut(s)	628, 658, 980, 1010, 1517, 1547
Bsc4I	CCNNNNNNNGG	7 cut(s)	220, 322, 347, 405, 457, 1044, 1501
Bse118I	RCCGGY	2 cut(s)	1200, 1610
Bse1I	ACTGG	5 cut(s)	202, 373, 754, 1078, 1568
Bse3DI	GCAATG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	497
BseDI	CCNNGG	6 cut(s)	316, 355, 1255, 1495, 1515, 1643
BseGI	GGATG	5 cut(s)	285, 764, 801, 939, 1470
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	7 cut(s)	220, 322, 347, 405, 457, 1044, 1501
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	252, 371, 1019, 1292
BseNI	ACTGG	5 cut(s)	202, 373, 754, 1078, 1568
BseRI	GAGGAG	1 cut(s)	1102
BseXI	GCAGC	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	458
BshNI	GGYRCC	3 cut(s)	46, 614, 1299
BsiHKAI	GWGCWC	1 cut(s)	1346
BsiHKCI	CYCGRG	2 cut(s)	1295, 1643
BsiSI	CCGG	7 cut(s)	221, 357, 1201, 1213, 1611, 1628, 1644
BslFI	GGGAC	1 cut(s)	1177
BslI	CCNNNNNNNGG	7 cut(s)	220, 322, 347, 405, 457, 1044, 1501
BsmAI	GTCTC	2 cut(s)	158, 400
BsmBI	CGTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	1177
Bso31I	GGTCTC	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	1295, 1643
Bsp1286I	GDGCHC	1 cut(s)	1346
Bsp143I	GATC	2 cut(s)	138, 1486
Bsp19I	CCATGG	2 cut(s)	316, 1255
BspACI	CCGC	7 cut(s)	51, 172, 252, 312, 458, 741, 1389
BspCNI	CTCAG	4 cut(s)	251, 372, 1018, 1291
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	6 cut(s)	48, 616, 645, 1301, 1416, 1566
BspMI	ACCTGC	1 cut(s)	845
BspT107I	GGYRCC	3 cut(s)	46, 614, 1299
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	849
BsrFI	RCCGGY	2 cut(s)	1200, 1610
BsrI	ACTGG	5 cut(s)	202, 373, 754, 1078, 1568
BssAI	RCCGGY	2 cut(s)	1200, 1610
BssECI	CCNNGG	6 cut(s)	316, 355, 1255, 1495, 1515, 1643
BssMI	GATC	2 cut(s)	138, 1486
BssSI	CACGAG	1 cut(s)	1339
BssT1I	CCWWGG	3 cut(s)	316, 1255, 1495
Bst2BI	CACGAG	1 cut(s)	1339
Bst4CI	ACNGT	2 cut(s)	1230, 1679
Bst6I	CTCTTC	2 cut(s)	950, 1130
BstC8I	GCNNGC	4 cut(s)	509, 1202, 1387, 1586
BstDEI	CTNAG	6 cut(s)	116, 238, 380, 1005, 1278, 1701
BstDSI	CCRYGG	2 cut(s)	316, 1255
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	5 cut(s)	285, 764, 801, 939, 1470
BstFNI	CGCG	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	2 cut(s)	141, 1489
BstMAI	GTCTC	2 cut(s)	158, 400
BstMBI	GATC	2 cut(s)	138, 1486
BstMWI	GCNNNNNNNGC	4 cut(s)	530, 650, 1364, 1585
BstNSI	RCATGY	1 cut(s)	1588
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	219, 355, 1642, 1643
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	511
BstV2I	GAAGAC	1 cut(s)	1707
BtgI	CCRYGG	2 cut(s)	316, 1255
BtgZI	GCGATG	1 cut(s)	319
BtrI	CACGTC	1 cut(s)	1351
BtsCI	GGATG	5 cut(s)	285, 764, 801, 939, 1470
BtsI	GCAGTG	2 cut(s)	783, 1137
BtsIMutI	CAGTG	6 cut(s)	472, 583, 783, 909, 1137, 1575
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	509, 1202, 1387, 1586
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	2 cut(s)	1200, 1610
Cfr13I	GGNCC	5 cut(s)	752, 867, 1001, 1332, 1415
Cfr9I	CCCGGG	1 cut(s)	1643
CviAII	CATG	9 cut(s)	203, 317, 422, 485, 724, 871, 1148, 1256, 1585
DdeI	CTNAG	6 cut(s)	116, 238, 380, 1005, 1278, 1701
DpnI	GATC	2 cut(s)	140, 1488
DpnII	GATC	2 cut(s)	138, 1486
DraI	TTTAAA	1 cut(s)	1015
DriI	GACNNNNNGTC	1 cut(s)	1413
EaeI	YGGCCR	5 cut(s)	313, 802, 1198, 1512, 1608
Eam1104I	CTCTTC	2 cut(s)	950, 1130
Eam1105I	GACNNNNNGTC	1 cut(s)	1413
EarI	CTCTTC	2 cut(s)	950, 1130
Eco130I	CCWWGG	3 cut(s)	316, 1255, 1495
Eco147I	AGGCCT	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	4 cut(s)	752, 867, 1001, 1415
Eco88I	CYCGRG	2 cut(s)	1295, 1643
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	461
EcoT14I	CCWWGG	3 cut(s)	316, 1255, 1495
ErhI	CCWWGG	3 cut(s)	316, 1255, 1495
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	9 cut(s)	206, 320, 425, 488, 727, 874, 1151, 1259, 1588
FalI	AAGNNNNNCTT	2 cut(s)	1623, 1655
FaqI	GGGAC	1 cut(s)	1177
FatI	CATG	9 cut(s)	202, 316, 421, 484, 723, 870, 1147, 1255, 1584
FauI	CCCGC	1 cut(s)	58
FauNDI	CATATG	1 cut(s)	1747
Fnu4HI	GCNGC	2 cut(s)	313, 525
FokI	GGATG	5 cut(s)	272, 751, 808, 946, 1457
Fsp4HI	GCNGC	2 cut(s)	313, 525
FspBI	CTAG	9 cut(s)	26, 35, 96, 122, 846, 992, 1304, 1475, 1541
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	2 cut(s)	313, 525
GsuI	CTGGAG	2 cut(s)	513, 1293
HapII	CCGG	7 cut(s)	221, 357, 1201, 1213, 1611, 1628, 1644
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	9 cut(s)	206, 320, 425, 488, 727, 874, 1151, 1259, 1588
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HindIII	AAGCTT	2 cut(s)	11, 161
HinfI	GANTC	4 cut(s)	248, 568, 1151, 1757
HpaII	CCGG	7 cut(s)	221, 357, 1201, 1213, 1611, 1628, 1644
HphI	GGTGA	3 cut(s)	871, 1202, 1625
Hpy166II	GTNNAC	2 cut(s)	300, 1317
Hpy188I	TCNGA	6 cut(s)	241, 295, 342, 897, 1008, 1281
Hpy188III	TCNNGA	8 cut(s)	122, 157, 451, 559, 812, 1310, 1418, 1754
Hpy8I	GTNNAC	2 cut(s)	300, 1317
Hpy99I	CGWCG	3 cut(s)	346, 370, 1352
HpyAV	CCTTC	5 cut(s)	217, 238, 271, 1162, 1676
HpyCH4III	ACNGT	2 cut(s)	1230, 1679
HpyCH4IV	ACGT	3 cut(s)	365, 393, 1350
HpyCH4V	TGCA	6 cut(s)	659, 776, 854, 968, 1130, 1242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	530, 650, 1364, 1585
HpyF3I	CTNAG	6 cut(s)	116, 238, 380, 1005, 1278, 1701
HpySE526I	ACGT	3 cut(s)	365, 393, 1350
Hsp92II	CATG	9 cut(s)	206, 320, 425, 488, 727, 874, 1151, 1259, 1588
HspAI	GCGC	1 cut(s)	511
KpnI	GGTACC	2 cut(s)	618, 1303
KroI	GCCGGC	1 cut(s)	1200
KroNI	GCCGGC	1 cut(s)	1202
Kzo9I	GATC	2 cut(s)	138, 1486
Lsp1109I	GCAGC	1 cut(s)	511
LweI	GCATC	1 cut(s)	924
MaeI	CTAG	9 cut(s)	26, 35, 96, 122, 846, 992, 1304, 1475, 1541
MaeII	ACGT	3 cut(s)	365, 393, 1350
MaeIII	GTNAC	6 cut(s)	223, 467, 634, 1208, 1466, 1635
MalI	GATC	2 cut(s)	140, 1488
MboI	GATC	2 cut(s)	138, 1486
MboII	GAAGA	6 cut(s)	967, 992, 1147, 1433, 1644, 1707
MfeI	CAATTG	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	1346
MlsI	TGGCCA	1 cut(s)	804
MluNI	TGGCCA	1 cut(s)	804
MlyI	GAGTC	3 cut(s)	242, 562, 1766
MmeI	TCCRAC	5 cut(s)	365, 423, 764, 1267, 1436
Mox20I	TGGCCA	1 cut(s)	804
MroNI	GCCGGC	1 cut(s)	1200
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	4 cut(s)	111, 1014, 1404, 1664
MslI	CAYNNNNRTG	1 cut(s)	1349
Msp20I	TGGCCA	1 cut(s)	804
MspA1I	CMGCKG	2 cut(s)	312, 533
MspI	CCGG	7 cut(s)	221, 357, 1201, 1213, 1611, 1628, 1644
MspR9I	CCNGG	4 cut(s)	221, 357, 1644, 1645
MunI	CAATTG	1 cut(s)	648
MvnI	CGCG	1 cut(s)	458
MwoI	GCNNNNNNNGC	4 cut(s)	530, 650, 1364, 1585
NaeI	GCCGGC	1 cut(s)	1202
NciI	CCSGG	4 cut(s)	221, 357, 1644, 1645
NcoI	CCATGG	2 cut(s)	316, 1255
NdeI	CATATG	1 cut(s)	1747
NdeII	GATC	2 cut(s)	138, 1486
NgoMIV	GCCGGC	1 cut(s)	1200
NlaIII	CATG	9 cut(s)	206, 320, 425, 488, 727, 874, 1151, 1259, 1588
NlaIV	GGNNCC	6 cut(s)	48, 616, 645, 1301, 1416, 1566
NmeAIII	GCCGAG	1 cut(s)	1540
NmuCI	GTSAC	3 cut(s)	467, 1208, 1635
NspI	RCATGY	1 cut(s)	1588
OliI	CACNNNNGTG	1 cut(s)	1349
PaeI	GCATGC	1 cut(s)	1588
PceI	AGGCCT	1 cut(s)	351
PdiI	GCCGGC	1 cut(s)	1202
PfeI	GAWTC	1 cut(s)	1151
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	314, 526
PleI	GAGTC	3 cut(s)	242, 562, 1765
PpsI	GAGTC	3 cut(s)	242, 562, 1765
PspEI	GGTNACC	1 cut(s)	223
PspN4I	GGNNCC	6 cut(s)	48, 616, 645, 1301, 1416, 1566
PspPI	GGNCC	5 cut(s)	752, 867, 1001, 1332, 1415
PstNI	CAGNNNCTG	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	1349
SaqAI	TTAA	4 cut(s)	111, 1014, 1404, 1664
SatI	GCNGC	2 cut(s)	313, 525
Sau3AI	GATC	2 cut(s)	138, 1486
Sau96I	GGNCC	5 cut(s)	752, 867, 1001, 1332, 1415
ScaI	AGTACT	4 cut(s)	30, 39, 554, 1604
SchI	GAGTC	3 cut(s)	242, 562, 1766
ScrFI	CCNGG	4 cut(s)	221, 357, 1644, 1645
SduI	GDGCHC	1 cut(s)	1346
SfaNI	GCATC	1 cut(s)	924
SinI	GGWCC	4 cut(s)	752, 867, 1001, 1415
SmaI	CCCGGG	1 cut(s)	1645
SmiMI	CAYNNNNRTG	1 cut(s)	1349
SmlI	CTYRAG	1 cut(s)	810
SmoI	CTYRAG	1 cut(s)	810
SpeI	ACTAGT	1 cut(s)	34
SphI	GCATGC	1 cut(s)	1588
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	7 cut(s)	51, 172, 252, 312, 458, 741, 1389
SspMI	CTAG	9 cut(s)	26, 35, 96, 122, 846, 992, 1304, 1475, 1541
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	4 cut(s)	219, 355, 1642, 1643
StyI	CCWWGG	3 cut(s)	316, 1255, 1495
TaaI	ACNGT	2 cut(s)	1230, 1679
TaiI	ACGT	3 cut(s)	368, 396, 1353
TaqI	TCGA	2 cut(s)	368, 1377
TatI	WGTACW	7 cut(s)	28, 37, 297, 552, 1222, 1314, 1602
TauI	GCSGC	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	1151
Tru1I	TTAA	4 cut(s)	111, 1014, 1404, 1664
Tru9I	TTAA	4 cut(s)	111, 1014, 1404, 1664
TscAI	CASTG	6 cut(s)	472, 583, 783, 909, 1137, 1575
TseFI	GTSAC	3 cut(s)	467, 1208, 1635
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	3 cut(s)	467, 1208, 1635
TspDTI	ATGAA	5 cut(s)	64, 322, 812, 1164, 1731
TspGWI	ACGGA	2 cut(s)	744, 1517
TspMI	CCCGGG	1 cut(s)	1643
TspRI	CASTG	6 cut(s)	472, 583, 783, 909, 1137, 1575
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	4 cut(s)	752, 867, 1001, 1415
XapI	RAATTY	4 cut(s)	409, 461, 1172, 1216
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	1588
XmaI	CCCGGG	1 cut(s)	1643
XspI	CTAG	9 cut(s)	26, 35, 96, 122, 846, 992, 1304, 1475, 1541
ZrmI	AGTACT	4 cut(s)	30, 39, 554, 1604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.