Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

12214041 .. 12217137

Gene Structure 3097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGTTTGTCAAGCTTGTAATAATTCTCGTAGTACTAGTCGTAGCAGCAGCTGAAGATCTCAGCTTCATCTACAATGGCTTCGAGTCTGGAGAAAATATTTGGCAAGATGGCCCCGGAGGGGGAGTCATGGTTGATGGTTTATTCAAAATAACGGGTCATACCTTCTACGCCGAGCCAGTAACCTTCAAAAATGACTCATCATCCAGTTCAGAAATTTTCTCCTTCTCTACCACTTTCGTCTTCGCTATCAGATCAGAGGACCCAACAGTTAGCAGCGGCCATGGCCTCGCCTTTGTTATCTCTCCAACTCTAGGACGTCCCGGAGTTCTTCCAAGCAAGTACTTCGGCCTCTTCAATGGCTCGAACTTGGGGAATATGAACAATCATGTTTTTGCTGTGGAGCTCGACACCATTAAGAGCACGGAGTTCAATGATATCGATAACAACCATATTGGGATCGACATCAATGGATTGAACTCTGTAAAGTCAGCAACAGCAGGATACTATGTTAAGGACGGAAGGTACCCAAGGAAATTGAGCCTCGTCAGTGGTAATCCAATGAAAGTTTGGGTCGAATATGATGGTACTCGGAAGCAGATTAATGTTACTTTGGCTCCAATTAGTGTTGGTAAGAAACCCCGAATTCCACTCTTGTCTTTAAAATATGACCTTTCCCCAGTTCTTAACAAAATTATGTATGTTGGCTTCTCCGCATCCACCGGCTCAGTCAATACATTCCGTTATATTTTGGGCTGGAGCTTTAGGATGAATGGCCAAGCTCAAGAACTTGTTCCTTCACAGCTACCTAAATTGCCTAGGATAGGAGACAAGAAACTGTCTAAACTTCTGACTTATGGTGTGCCTGTGATGGCTGTGAGTTTAGTTTTGCTAACGATTTGTCTTGTGGTTTTTATCATAAGAAGGAAGAAGTGCGCAGAACTACTTGAAGATTGGGAGCTGGAGTATGGGCCTCAAAGGTTTAAATACGAAGAATTGTATAAAGCCACTAAAGGGTTTGGAAAGGAACTGCTCTTGGGTGTTGGGGGATTTGGTGAGGTCTATAGAGGTATCTTACCCACCTCTAAGATTGAGATCGCTGTGAAGAGGGTTTCGCATAAATCAGGACAGGGAATGAAGGAATTTGTAGCAGAAATTGTTAGCCTTGGCCGGCTTCGTCACCGGAATTTAGTACAACTCTTGGGCTATTGCAGGCGAAATGGTGAACTACTTTTGGTGTATGACTACATGCCTAATGGTAGCTTGGAAAAGTACCTCTACAACCAACCGAAGATTACTCTAAACTGGAGTCAGAGGTTTAGAGTAATCAAAGGTGTGGCTTCAGGATTGTTTTATCTTCATGAAGGGTGGGAACAAGTAGTAATTCACAGAGATGTGAAGGCTAGTAATGTGCTACTAGACCAGGAATTGAATGGAAGACTGGGAGATTTTGGACTTGCAAGATTATGTGCCCATGGGACAGACCCTCAAGCTACTCATGTAGCTGGCACACTTGGGTATTTAGCCCCGGAGCATGCAAGAACTGGTCGGGTCACCATGAGCACAGATGTGTTTGCTTACGGGATATTTTTGCTCGAAGTTGCCTGTGGAAGAAGGCCGATAGAGACACAAAGACCGGAGGAGGATATCGTTCTGGTTGATCGGGTTTTTTCGTGTTGGAATAGAGGTAATATTCTAGAGGCAAGAGATCAAAACTTGGGTAACGATTTTGTAGTTGAGGAAGTGGAATTGGTGTTGAAGCTTGCATTGTTGTGCACTCGTTTGCAGCCTGCAGCCAGGCCAAGCATGCGAGAAGTGATGCAGTATTTGAAAGGTGATATTGATCTCCCAGATTTGTCATTTCTTCGGCCCTCTTTGAGTGGTTTAGCATTTGCGCATGATGAAGGTTCAGATGATGTTGAAATGGCGTATCAGTGTTCATATGTTCCAGAGTCGACCCTCCTCTCCGGTGGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

658

Amino Acids

73.15

Weight (kDa)

7.97

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	20 - 269	6e-70	Legume lectin domain
Pkinase	PF00069	344 - 607	1.6e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	345 - 608	6.6e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
Acc16I	TGCGCA	2 cut(s)	934, 1893
Acc65I	GGTACC	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	1952
AciI	CCGC	2 cut(s)	276, 711
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	3 cut(s)	277, 772, 1165
AcsI	RAATTY	4 cut(s)	213, 642, 1139, 1183
AcuI	CTGAAG	2 cut(s)	72, 1323
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	6 cut(s)	33, 341, 524, 586, 1191, 1271
AfiI	CCNNNNNNNGG	5 cut(s)	118, 119, 311, 821, 1011
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	1419, 1793
AleI	CACNNNNGTG	1 cut(s)	1565
Alw21I	GWGCWC	4 cut(s)	405, 422, 1562, 1775
Alw26I	GTCTC	2 cut(s)	819, 1616
Alw44I	GTGCAC	1 cut(s)	1771
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	50
ApaLI	GTGCAC	1 cut(s)	1771
ApeKI	GCWGC	5 cut(s)	44, 47, 273, 1783, 1790
ApoI	RAATTY	4 cut(s)	213, 642, 1139, 1183
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	789
Asp718I	GGTACC	1 cut(s)	522
AspA2I	CCTAGG	1 cut(s)	815
AspLEI	GCGC	2 cut(s)	935, 1894
AspS9I	GGNCC	4 cut(s)	110, 259, 968, 1866
AsuC2I	CCSGG	3 cut(s)	114, 321, 1526
AsuHPI	GGTGA	5 cut(s)	1064, 1169, 1232, 1543, 1844
AvaII	GGWCC	1 cut(s)	259
AvrII	CCTAGG	1 cut(s)	815
BaeGI	GKGCMC	2 cut(s)	1471, 1775
BalI	TGGCCA	1 cut(s)	774
BanI	GGYRCC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	405
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
BbsI	GAAGAC	2 cut(s)	232, 1441
Bbv12I	GWGCWC	4 cut(s)	405, 422, 1562, 1775
BbvI	GCAGC	5 cut(s)	56, 59, 285, 1795, 1802
BccI	CCATC	4 cut(s)	101, 128, 575, 862
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	1421, 1795
BciVI	GTATCC	1 cut(s)	494
BcnI	CCSGG	3 cut(s)	114, 321, 1526
BcoDI	GTCTC	2 cut(s)	819, 1616
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	6 cut(s)	35, 311, 816, 1401, 1415, 1694
BfmI	CTRYAG	2 cut(s)	1060, 1788
BfuI	GTATCC	1 cut(s)	494
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	6 cut(s)	45, 48, 274, 277, 1784, 1791
BlnI	CCTAGG	1 cut(s)	815
BlsI	GCNGC	6 cut(s)	46, 49, 275, 278, 1785, 1792
BmcAI	AGTACT	2 cut(s)	33, 341
Bme1390I	CCNGG	5 cut(s)	114, 321, 1421, 1526, 1795
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	4 cut(s)	110, 259, 968, 1866
BmiI	GGNNCC	4 cut(s)	112, 261, 524, 615
BmrFI	CCNGG	5 cut(s)	114, 321, 1421, 1526, 1795
BmrI	ACTGGG	2 cut(s)	671, 1448
BmsI	GCATC	2 cut(s)	722, 1806
BmuI	ACTGGG	2 cut(s)	671, 1448
BpiI	GAAGAC	2 cut(s)	232, 1441
BpmI	CTGGAG	4 cut(s)	108, 775, 980, 1324
BpuEI	CTTGAG	2 cut(s)	765, 1470
BpuMI	CCSGG	3 cut(s)	114, 321, 1526
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	3 cut(s)	461, 1091, 1839
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	7 cut(s)	112, 280, 527, 815, 1162, 1471, 1524
BsaWI	WCCGGW	3 cut(s)	1179, 1633, 1964
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 114, 138, 144, 598, 628, 947, 977
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 119, 311, 821, 1011
Bse118I	RCCGGY	2 cut(s)	719, 1167
Bse1I	ACTGG	6 cut(s)	176, 204, 677, 1307, 1443, 1546
Bse8I	GATNNNNATC	3 cut(s)	461, 1091, 1839
BseBI	CCWGG	2 cut(s)	1421, 1795
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	7 cut(s)	112, 280, 527, 815, 1162, 1471, 1524
BseGI	GGATG	3 cut(s)	200, 713, 771
BseJI	GATNNNNATC	3 cut(s)	461, 1091, 1839
BseLI	CCNNNNNNNGG	5 cut(s)	118, 119, 311, 821, 1011
BseMII	CTCAG	2 cut(s)	73, 738
BseNI	ACTGG	6 cut(s)	176, 204, 677, 1307, 1443, 1546
BseRI	GAGGAG	2 cut(s)	1652, 1949
BseSI	GKGCMC	2 cut(s)	1471, 1775
BseXI	GCAGC	5 cut(s)	56, 59, 285, 1795, 1802
BshNI	GGYRCC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	4 cut(s)	405, 422, 1562, 1775
BsiSI	CCGG	8 cut(s)	114, 321, 720, 1168, 1180, 1526, 1634, 1965
BslFI	GGGAC	2 cut(s)	303, 1489
BslI	CCNNNNNNNGG	5 cut(s)	118, 119, 311, 821, 1011
BsmAI	GTCTC	2 cut(s)	819, 1616
BsmFI	GGGAC	2 cut(s)	303, 1489
Bsp1286I	GDGCHC	5 cut(s)	405, 422, 1471, 1562, 1775
Bsp143I	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
Bsp19I	CCATGG	2 cut(s)	280, 1471
BspACI	CCGC	2 cut(s)	276, 711
BspCNI	CTCAG	2 cut(s)	72, 737
BspDI	ATCGAT	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	1357
BspLI	GGNNCC	4 cut(s)	112, 261, 524, 615
BspMAI	CTGCAG	1 cut(s)	1792
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	522
BsrFI	RCCGGY	2 cut(s)	719, 1167
BsrI	ACTGG	6 cut(s)	176, 204, 677, 1307, 1443, 1546
BssAI	RCCGGY	2 cut(s)	719, 1167
BssECI	CCNNGG	7 cut(s)	112, 280, 527, 815, 1162, 1471, 1524
BssMI	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	5 cut(s)	280, 527, 815, 1162, 1471
Bst2UI	CCWGG	2 cut(s)	1421, 1795
Bst4CI	ACNGT	2 cut(s)	268, 837
Bst6I	CTCTTC	2 cut(s)	356, 1097
BstACI	GRCGYC	1 cut(s)	316
BstC8I	GCNNGC	7 cut(s)	1169, 1211, 1504, 1533, 1761, 1788, 1805
BstDEI	CTNAG	3 cut(s)	59, 724, 1083
BstDSI	CCRYGG	2 cut(s)	280, 1471
BstEII	GGTNACC	1 cut(s)	1549
BstENI	CCTNNNNNAGG	1 cut(s)	819
BstF5I	GGATG	3 cut(s)	200, 713, 771
BstHHI	GCGC	2 cut(s)	935, 1894
BstKTI	GATC	7 cut(s)	58, 254, 459, 1095, 1660, 1708, 1843
BstMAI	GTCTC	2 cut(s)	819, 1616
BstMBI	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
BstMWI	GCNNNNNNNGC	2 cut(s)	282, 1804
BstNI	CCWGG	2 cut(s)	1421, 1795
BstNSI	RCATGY	3 cut(s)	1249, 1535, 1807
BstPI	GGTNACC	1 cut(s)	1549
BstSCI	CCNGG	5 cut(s)	112, 319, 1419, 1524, 1793
BstSFI	CTRYAG	2 cut(s)	1060, 1788
BstSLI	GKGCMC	2 cut(s)	1471, 1775
BstV1I	GCAGC	5 cut(s)	56, 59, 285, 1795, 1802
BstV2I	GAAGAC	2 cut(s)	232, 1441
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	494
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	2 cut(s)	280, 1471
BtsCI	GGATG	3 cut(s)	200, 713, 771
BtsIMutI	CAGTG	2 cut(s)	553, 1937
Cac8I	GCNNGC	7 cut(s)	1169, 1211, 1504, 1533, 1761, 1788, 1805
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	1357
CfoI	GCGC	2 cut(s)	935, 1894
Cfr10I	RCCGGY	2 cut(s)	719, 1167
Cfr13I	GGNCC	4 cut(s)	110, 259, 968, 1866
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	6 cut(s)	32, 340, 523, 585, 1190, 1270
CviQI	GTAC	6 cut(s)	32, 340, 523, 585, 1190, 1270
DdeI	CTNAG	3 cut(s)	59, 724, 1083
DpnI	GATC	7 cut(s)	57, 253, 458, 1094, 1659, 1707, 1842
DpnII	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
DraI	TTTAAA	2 cut(s)	660, 982
EaeI	YGGCCR	3 cut(s)	277, 772, 1165
Eam1104I	CTCTTC	2 cut(s)	356, 1097
EarI	CTCTTC	2 cut(s)	356, 1097
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	5 cut(s)	280, 527, 815, 1162, 1471
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	2 cut(s)	436, 1645
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	72, 1323
Eco91I	GGTNACC	1 cut(s)	1549
EcoICRI	GAGCTC	1 cut(s)	403
EcoNI	CCTNNNNNAGG	1 cut(s)	819
EcoO109I	RGGNCCY	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	1549
EcoRI	GAATTC	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	1419, 1793
EcoRV	GATATC	2 cut(s)	436, 1645
EcoT14I	CCWWGG	5 cut(s)	280, 527, 815, 1162, 1471
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	5 cut(s)	280, 527, 815, 1162, 1471
FaqI	GGGAC	2 cut(s)	303, 1489
FauNDI	CATATG	1 cut(s)	1939
FblI	GTMKAC	1 cut(s)	1952
Fnu4HI	GCNGC	6 cut(s)	45, 48, 274, 277, 1784, 1791
FokI	GGATG	3 cut(s)	187, 700, 778
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	45, 48, 274, 277, 1784, 1791
FspBI	CTAG	6 cut(s)	35, 311, 816, 1401, 1415, 1694
FspI	TGCGCA	2 cut(s)	934, 1893
GlaI	GCGC	2 cut(s)	934, 1893
GluI	GCNGC	6 cut(s)	45, 48, 274, 277, 1784, 1791
GsuI	CTGGAG	4 cut(s)	108, 775, 980, 1324
HapII	CCGG	8 cut(s)	114, 321, 720, 1168, 1180, 1526, 1634, 1965
HhaI	GCGC	2 cut(s)	935, 1894
Hin1I	GRCGYC	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	933, 1892
HinP1I	GCGC	2 cut(s)	933, 1892
HincII	GTYRAC	1 cut(s)	1953
HindII	GTYRAC	1 cut(s)	1953
HindIII	AAGCTT	2 cut(s)	11, 1757
HinfI	GANTC	5 cut(s)	83, 123, 194, 1306, 1949
HpaII	CCGG	8 cut(s)	114, 321, 720, 1168, 1180, 1526, 1634, 1965
HphI	GGTGA	5 cut(s)	1064, 1169, 1232, 1543, 1844
Hpy166II	GTNNAC	3 cut(s)	1223, 1773, 1953
Hpy188I	TCNGA	7 cut(s)	211, 251, 256, 591, 849, 1311, 1909
Hpy188III	TCNNGA	7 cut(s)	87, 782, 1122, 1341, 1358, 1694, 1946
Hpy8I	GTNNAC	3 cut(s)	1223, 1773, 1953
HpyCH4III	ACNGT	2 cut(s)	268, 837
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	8 cut(s)	1209, 1457, 1535, 1763, 1773, 1783, 1790, 1819
HpyF10VI	GCNNNNNNNGC	2 cut(s)	282, 1804
HpyF3I	CTNAG	3 cut(s)	59, 724, 1083
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	316
HspAI	GCGC	2 cut(s)	933, 1892
KpnI	GGTACC	1 cut(s)	526
KroI	GCCGGC	1 cut(s)	1167
KroNI	GCCGGC	1 cut(s)	1169
Kzo9I	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
LmnI	GCTCC	5 cut(s)	400, 619, 756, 955, 1528
Lsp1109I	GCAGC	5 cut(s)	56, 59, 285, 1795, 1802
LweI	GCATC	2 cut(s)	722, 1806
MaeI	CTAG	6 cut(s)	35, 311, 816, 1401, 1415, 1694
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	5 cut(s)	178, 604, 1175, 1549, 1718
MalI	GATC	7 cut(s)	57, 253, 458, 1094, 1659, 1707, 1842
MboI	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	5 cut(s)	405, 422, 1471, 1562, 1775
MlsI	TGGCCA	1 cut(s)	774
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	5 cut(s)	92, 132, 188, 1315, 1958
MmeI	TCCRAC	2 cut(s)	329, 1655
Mox20I	TGGCCA	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	1167
MroXI	GAANNNNTTC	1 cut(s)	789
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	6 cut(s)	414, 510, 600, 659, 684, 981
MslI	CAYNNNNRTG	3 cut(s)	1389, 1565, 1768
Msp20I	TGGCCA	1 cut(s)	774
MspA1I	CMGCKG	2 cut(s)	50, 276
MspI	CCGG	8 cut(s)	114, 321, 720, 1168, 1180, 1526, 1634, 1965
MspR9I	CCNGG	5 cut(s)	114, 321, 1421, 1526, 1795
MvaI	CCWGG	2 cut(s)	1421, 1795
MwoI	GCNNNNNNNGC	2 cut(s)	282, 1804
NaeI	GCCGGC	1 cut(s)	1169
NciI	CCSGG	3 cut(s)	114, 321, 1526
NcoI	CCATGG	2 cut(s)	280, 1471
NdeI	CATATG	1 cut(s)	1939
NdeII	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
NgoMIV	GCCGGC	1 cut(s)	1167
NlaIV	GGNNCC	4 cut(s)	112, 261, 524, 615
NmeAIII	GCCGAG	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	1175, 1549
NsbI	TGCGCA	2 cut(s)	934, 1893
NspI	RCATGY	3 cut(s)	1249, 1535, 1807
OliI	CACNNNNGTG	1 cut(s)	1565
PaeI	GCATGC	2 cut(s)	1535, 1807
PagI	TCATGA	1 cut(s)	1357
PdiI	GCCGGC	1 cut(s)	1169
PdmI	GAANNNNTTC	1 cut(s)	789
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	6 cut(s)	46, 49, 275, 278, 1785, 1792
PleI	GAGTC	5 cut(s)	91, 131, 188, 1314, 1957
PpsI	GAGTC	5 cut(s)	91, 131, 188, 1314, 1957
PpuMI	RGGWCCY	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	1419, 1793
PspEI	GGTNACC	1 cut(s)	1549
PspGI	CCWGG	2 cut(s)	1419, 1793
PspN4I	GGNNCC	4 cut(s)	112, 261, 524, 615
PspPI	GGNCC	4 cut(s)	110, 259, 968, 1866
PspPPI	RGGWCCY	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	1792
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	6 cut(s)	33, 341, 524, 586, 1191, 1271
RsaNI	GTAC	6 cut(s)	32, 340, 523, 585, 1190, 1270
RseI	CAYNNNNRTG	3 cut(s)	1389, 1565, 1768
SacI	GAGCTC	1 cut(s)	405
SalI	GTCGAC	1 cut(s)	1951
SaqAI	TTAA	6 cut(s)	414, 510, 600, 659, 684, 981
SatI	GCNGC	6 cut(s)	45, 48, 274, 277, 1784, 1791
Sau3AI	GATC	7 cut(s)	55, 251, 456, 1092, 1657, 1705, 1840
Sau96I	GGNCC	4 cut(s)	110, 259, 968, 1866
ScaI	AGTACT	2 cut(s)	33, 341
SchI	GAGTC	5 cut(s)	92, 132, 188, 1315, 1958
ScrFI	CCNGG	5 cut(s)	114, 321, 1421, 1526, 1795
SduI	GDGCHC	5 cut(s)	405, 422, 1471, 1562, 1775
SfaNI	GCATC	2 cut(s)	722, 1806
SfcI	CTRYAG	2 cut(s)	1060, 1788
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	3 cut(s)	1389, 1565, 1768
SmlI	CTYRAG	2 cut(s)	780, 1485
SmoI	CTYRAG	2 cut(s)	780, 1485
SpeI	ACTAGT	1 cut(s)	34
SphI	GCATGC	2 cut(s)	1535, 1807
SsiI	CCGC	2 cut(s)	276, 711
SspI	AATATT	2 cut(s)	97, 1690
SspMI	CTAG	6 cut(s)	35, 311, 816, 1401, 1415, 1694
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	5 cut(s)	112, 319, 1419, 1524, 1793
StyI	CCWWGG	5 cut(s)	280, 527, 815, 1162, 1471
TaaI	ACNGT	2 cut(s)	268, 837
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	8 cut(s)	81, 362, 405, 438, 459, 573, 1593, 1952
TatI	WGTACW	3 cut(s)	31, 339, 1189
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	6 cut(s)	414, 510, 600, 659, 684, 981
Tru9I	TTAA	6 cut(s)	414, 510, 600, 659, 684, 981
TscAI	CASTG	2 cut(s)	553, 1937
TseFI	GTSAC	2 cut(s)	1175, 1549
TseI	GCWGC	5 cut(s)	44, 47, 273, 1783, 1790
Tsp45I	GTSAC	2 cut(s)	1175, 1549
TspDTI	ATGAA	9 cut(s)	55, 392, 575, 782, 1148, 1346, 1374, 1914, 1926
TspGWI	ACGGA	3 cut(s)	437, 531, 728
TspRI	CASTG	2 cut(s)	553, 1937
VneI	GTGCAC	1 cut(s)	1771
VpaK11BI	GGWCC	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	819
XapI	RAATTY	4 cut(s)	213, 642, 1139, 1183
XbaI	TCTAGA	1 cut(s)	1693
XceI	RCATGY	3 cut(s)	1249, 1535, 1807
XcmI	CCANNNNNNNNNTGG	2 cut(s)	564, 1427
XmaJI	CCTAGG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	1952
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	6 cut(s)	35, 311, 816, 1401, 1415, 1694
ZraI	GACGTC	1 cut(s)	317
ZrmI	AGTACT	2 cut(s)	33, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.