Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007705.1

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Reverse (-)

67292 .. 67831

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007705.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtttgtcaagctttctgctctcctagtactactagtacttctggcacccgcagaagcccaagacctcaatttcatctacaatgatggtttctctagccgttctggtcttaatctaagtctagacggcatagcagagatcacaccagaaggtctcttgaagcttacgaaccgcaccaaagagagaactgacagaactggtcatgccttctaccctaacccgttaaccttcaaaaactcagagaacgactccgctttctccttctccaccacctttatctttgccatccaatcagagtacactactttcagcggccatggaatggcctttttcatcgctccgacgaaaggcctccccggagctacttcgagccagtacctgagcctgttcaacgtctccaacaatgggaatttcagcaatcatgtttttgctgtggagcttgacactatccagaacgcggaattcagtgacatcaatgataaccatgttgggatagacatcaatggcttgcagtctgtccaagctgctccaagaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

179

Amino Acids

19.52

Weight (kDa)

4.89

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccII	CGCG	1 cut(s)	458
AciI	CCGC	5 cut(s)	51, 172, 252, 312, 458
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	409, 461
AfaI	GTAC	4 cut(s)	30, 39, 299, 377
AfiI	CCNNNNNNNGG	4 cut(s)	322, 347, 405, 457
AgsI	TTSAA	3 cut(s)	160, 232, 391
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	5 cut(s)	13, 163, 362, 439, 524
AluI	AGCT	5 cut(s)	13, 163, 362, 439, 524
Alw26I	GTCTC	2 cut(s)	158, 400
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	313, 324, 349
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	2 cut(s)	409, 461
AsuC2I	CCSGG	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	2 cut(s)	80, 293
BceAI	ACGGC	2 cut(s)	84, 142
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	158, 400
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	26, 35, 96, 122
BisI	GCNGC	2 cut(s)	313, 525
BlsI	GCNGC	2 cut(s)	314, 526
BmcAI	AGTACT	2 cut(s)	30, 39
Bme1390I	CCNGG	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
Bpu10I	CCTNAGC	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	316, 355
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 347, 405, 457
Bse1I	ACTGG	2 cut(s)	202, 373
Bse8I	GATNNNNATC	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	316, 355
BseGI	GGATG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	497
BseLI	CCNNNNNNNGG	4 cut(s)	322, 347, 405, 457
BseMII	CTCAG	2 cut(s)	252, 371
BseNI	ACTGG	2 cut(s)	202, 373
BseXI	GCAGC	1 cut(s)	511
Bsh1236I	CGCG	1 cut(s)	458
BshFI	GGCC	3 cut(s)	315, 326, 351
BshNI	GGYRCC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	357
BslI	CCNNNNNNNGG	4 cut(s)	322, 347, 405, 457
BsmAI	GTCTC	2 cut(s)	158, 400
BsmBI	CGTCTC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	315, 326, 351
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	5 cut(s)	51, 172, 252, 312, 458
BspANI	GGCC	3 cut(s)	315, 326, 351
BspCNI	CTCAG	2 cut(s)	251, 372
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	202, 373
BssECI	CCNNGG	2 cut(s)	316, 355
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	3 cut(s)	116, 238, 380
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	158, 400
BstMBI	GATC	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	511
BsuRI	GGCC	3 cut(s)	315, 326, 351
BtgI	CCRYGG	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	379
Csp6I	GTAC	4 cut(s)	29, 38, 298, 376
CviAII	CATG	4 cut(s)	203, 317, 422, 485
CviQI	GTAC	4 cut(s)	29, 38, 298, 376
DdeI	CTNAG	3 cut(s)	116, 238, 380
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	4 cut(s)	206, 320, 425, 488
FaiI	YATR	5 cut(s)	131, 204, 318, 423, 486
FatI	CATG	4 cut(s)	202, 316, 421, 484
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	313, 525
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	313, 525
FspBI	CTAG	4 cut(s)	26, 35, 96, 122
GluI	GCNGC	2 cut(s)	313, 525
HaeIII	GGCC	3 cut(s)	315, 326, 351
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	4 cut(s)	206, 320, 425, 488
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HindIII	AAGCTT	2 cut(s)	11, 161
HinfI	GANTC	1 cut(s)	248
HpaI	GTTAAC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	2 cut(s)	225, 300
Hpy188I	TCNGA	3 cut(s)	241, 295, 342
Hpy188III	TCNNGA	3 cut(s)	122, 157, 451
Hpy8I	GTNNAC	2 cut(s)	225, 300
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	4 cut(s)	143, 217, 238, 271
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	511
HpyF3I	CTNAG	3 cut(s)	116, 238, 380
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	206, 320, 425, 488
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	4 cut(s)	343, 359, 436, 532
LpnPI	CCDG	9 cut(s)	29, 90, 159, 183, 370, 386, 392, 398, 464
Lsp1109I	GCAGC	1 cut(s)	511
MaeI	CTAG	4 cut(s)	26, 35, 96, 122
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MluCI	AATT	3 cut(s)	70, 409, 461
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	2 cut(s)	365, 423
MnlI	CCTC	2 cut(s)	77, 362
MseI	TTAA	2 cut(s)	111, 224
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	458
NciI	CCSGG	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	4 cut(s)	206, 320, 425, 488
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	467
PceI	AGGCCT	1 cut(s)	351
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	314, 526
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	379
RsaI	GTAC	4 cut(s)	30, 39, 299, 377
RsaNI	GTAC	4 cut(s)	29, 38, 298, 376
SaqAI	TTAA	2 cut(s)	111, 224
SatI	GCNGC	2 cut(s)	313, 525
Sau3AI	GATC	1 cut(s)	138
ScaI	AGTACT	2 cut(s)	30, 39
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	357
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	3 cut(s)	70, 409, 461
SseBI	AGGCCT	1 cut(s)	351
SsiI	CCGC	5 cut(s)	51, 172, 252, 312, 458
SspMI	CTAG	4 cut(s)	26, 35, 96, 122
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	316
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	368
TasI	AATT	3 cut(s)	70, 409, 461
TatI	WGTACW	3 cut(s)	28, 37, 297
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	111, 224
Tru9I	TTAA	2 cut(s)	111, 224
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	64, 322
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	2 cut(s)	409, 461
XbaI	TCTAGA	1 cut(s)	121
XspI	CTAG	4 cut(s)	26, 35, 96, 122
ZrmI	AGTACT	2 cut(s)	30, 39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.