Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003391.1

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

55048 .. 58631

Gene Structure 3584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003391.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgtttgtcaaggtttctgttctcctagtactactagtacttctggcaccagcagaagcccaagacctcaatttcatctacaatgatggtttcactggccgttctggtcttaatctcagtttagacggcatagcagagatcacaccaacaggtctcttgaagcttacaaacgacaccaaactgaaaagtggtcatgccttctaccctaacccagtaaccttcaagaactcagagaacgacaccgctttctccttctccaccaactttgtttttgccatccgatcagagtacactactctcagcggccatggaatcgcctttgtcatcgctccgacgagaggcctccccggagctctgccgaaccagtacttgagcctgttcaacgggtccaacaatgggaatttctccaatcatgtttttgctgtggagcttgacacgatccagaacacggaattcagtgacatcaatgaaaaccatgttgggatcgacatcaatggcttgcactctgtcaaagctgccgcagctggttattttgatggtcagttcaagaacctgagtcttatcagtggtaaagaaatgagagtttgggttgaatatgatggtaccaagaagcaaattgaagttactattgctccaattgctgttgcaacgaaacccacaactccacttttgtctttgaaatatgacctttccccaattctcaacaaaaccatgtatgttggcttttcttcttcaactggttcattcctcacatcccattatgtagtgggttggagctttaggatgaatggccaagctcaagatcttacagcttccaaacttcccaagttgcctagcattgcaggtaaaaagagaaacttgaaactagaggatggaaaggaaaatggaaaggaagtggagagacaaagaagatggaatggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

307

Amino Acids

33.59

Weight (kDa)

8.57

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	833
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	2 cut(s)	46, 602
AciI	CCGC	3 cut(s)	243, 303, 519
AclWI	GGATC	2 cut(s)	433, 491
AcoI	YGGCCR	3 cut(s)	97, 304, 790
AcsI	RAATTY	2 cut(s)	400, 452
AfaI	GTAC	5 cut(s)	30, 39, 290, 368, 604
AfiI	CCNNNNNNNGG	3 cut(s)	338, 396, 448
AgsI	TTSAA	9 cut(s)	160, 223, 382, 547, 593, 620, 679, 735, 862
AhlI	ACTAGT	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	8 cut(s)	163, 353, 430, 515, 524, 777, 797, 812
AluI	AGCT	8 cut(s)	163, 353, 430, 515, 524, 777, 797, 812
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	158, 895
AlwI	GGATC	2 cut(s)	433, 491
AoxI	GGCC	4 cut(s)	97, 304, 340, 790
ApeKI	GCWGC	2 cut(s)	515, 521
ApoI	RAATTY	2 cut(s)	400, 452
Asp718I	GGTACC	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	387
AsuC2I	CCSGG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	792
BanI	GGYRCC	2 cut(s)	46, 602
BanII	GRGCYC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	502, 533
BccI	CCATC	6 cut(s)	80, 284, 530, 593, 866, 906
BceAI	ACGGC	2 cut(s)	84, 142
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	158, 895
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	26, 35, 834, 866
BfuAI	ACCTGC	1 cut(s)	833
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	4 cut(s)	304, 516, 519, 522
BlsI	GCNGC	4 cut(s)	305, 517, 520, 523
BmcAI	AGTACT	3 cut(s)	30, 39, 368
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	387
BmiI	GGNNCC	3 cut(s)	48, 388, 604
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpuEI	CTTGAG	2 cut(s)	391, 783
BpuMI	CCSGG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	307, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 396, 448
Bse1I	ACTGG	4 cut(s)	100, 212, 364, 742
Bse3DI	GCAATG	1 cut(s)	837
Bse8I	GATNNNNATC	1 cut(s)	488
BseDI	CCNNGG	2 cut(s)	307, 346
BseGI	GGATG	4 cut(s)	276, 752, 789, 877
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	3 cut(s)	338, 396, 448
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	4 cut(s)	130, 243, 313, 545
BseNI	ACTGG	4 cut(s)	100, 212, 364, 742
BseXI	GCAGC	2 cut(s)	502, 533
BshFI	GGCC	4 cut(s)	99, 306, 342, 792
BshNI	GGYRCC	2 cut(s)	46, 602
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	338, 396, 448
BsmAI	GTCTC	2 cut(s)	158, 895
BsnI	GGCC	4 cut(s)	99, 306, 342, 792
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	138, 281, 438, 483, 802
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	3 cut(s)	243, 303, 519
BspANI	GGCC	4 cut(s)	99, 306, 342, 792
BspCNI	CTCAG	4 cut(s)	129, 242, 312, 546
BspLI	GGNNCC	3 cut(s)	48, 388, 604
BspMI	ACCTGC	1 cut(s)	833
BspPI	GGATC	2 cut(s)	433, 491
BspT107I	GGYRCC	2 cut(s)	46, 602
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	4 cut(s)	100, 212, 364, 742
BssECI	CCNNGG	2 cut(s)	307, 346
BssMI	GATC	5 cut(s)	138, 281, 438, 483, 802
BssT1I	CCWWGG	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	4 cut(s)	116, 229, 299, 554
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	4 cut(s)	276, 752, 789, 877
BstKTI	GATC	5 cut(s)	141, 284, 441, 486, 805
BstMAI	GTCTC	2 cut(s)	158, 895
BstMBI	GATC	5 cut(s)	138, 281, 438, 483, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	521, 638
BstSCI	CCNGG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	502, 533
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BsuRI	GGCC	4 cut(s)	99, 306, 342, 792
BtgI	CCRYGG	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	4 cut(s)	276, 752, 789, 877
BtsIMutI	CAGTG	3 cut(s)	93, 463, 571
BveI	ACCTGC	1 cut(s)	833
Cac8I	GCNNGC	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	387
Csp6I	GTAC	5 cut(s)	29, 38, 289, 367, 603
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	5 cut(s)	194, 308, 413, 476, 712
CviQI	GTAC	5 cut(s)	29, 38, 289, 367, 603
DdeI	CTNAG	4 cut(s)	116, 229, 299, 554
DpnI	GATC	5 cut(s)	140, 283, 440, 485, 804
DpnII	GATC	5 cut(s)	138, 281, 438, 483, 802
EaeI	YGGCCR	3 cut(s)	97, 304, 790
Ecl136II	GAGCTC	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	307
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	5 cut(s)	197, 311, 416, 479, 715
FalI	AAGNNNNNCTT	2 cut(s)	842, 874
FatI	CATG	5 cut(s)	193, 307, 412, 475, 711
Fnu4HI	GCNGC	4 cut(s)	304, 516, 519, 522
FokI	GGATG	4 cut(s)	263, 739, 796, 884
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	4 cut(s)	304, 516, 519, 522
FspBI	CTAG	4 cut(s)	26, 35, 834, 866
GluI	GCNGC	4 cut(s)	304, 516, 519, 522
HaeIII	GGCC	4 cut(s)	99, 306, 342, 792
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	5 cut(s)	197, 311, 416, 479, 715
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	312, 556
HpaII	CCGG	1 cut(s)	348
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	4 cut(s)	232, 281, 286, 333
Hpy188III	TCNNGA	5 cut(s)	157, 223, 442, 547, 800
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	208, 229, 262
HpyCH4V	TGCA	3 cut(s)	502, 647, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	521, 638
HpyF3I	CTNAG	4 cut(s)	116, 229, 299, 554
Hsp92II	CATG	5 cut(s)	197, 311, 416, 479, 715
KpnI	GGTACC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	138, 281, 438, 483, 802
LmnI	GCTCC	5 cut(s)	334, 350, 427, 637, 774
Lsp1109I	GCAGC	2 cut(s)	502, 533
MaeI	CTAG	4 cut(s)	26, 35, 834, 866
MaeIII	GTNAC	3 cut(s)	214, 458, 622
MalI	GATC	5 cut(s)	140, 283, 440, 485, 804
MboI	GATC	5 cut(s)	138, 281, 438, 483, 802
MboII	GAAGA	3 cut(s)	720, 723, 921
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	6 cut(s)	70, 400, 452, 615, 636, 696
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	3 cut(s)	356, 414, 752
MnlI	CCTC	5 cut(s)	77, 332, 353, 758, 862
Mox20I	TGGCCA	1 cut(s)	792
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	2 cut(s)	303, 524
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	521, 638
NciI	CCSGG	1 cut(s)	348
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	5 cut(s)	138, 281, 438, 483, 802
NlaIII	CATG	5 cut(s)	197, 311, 416, 479, 715
NlaIV	GGNNCC	3 cut(s)	48, 388, 604
NmuCI	GTSAC	1 cut(s)	458
PceI	AGGCCT	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	312
PkrI	GCNGC	4 cut(s)	305, 517, 520, 523
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	48, 388, 604
PspPI	GGNCC	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	802
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	5 cut(s)	30, 39, 290, 368, 604
RsaNI	GTAC	5 cut(s)	29, 38, 289, 367, 603
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	4 cut(s)	304, 516, 519, 522
Sau3AI	GATC	5 cut(s)	138, 281, 438, 483, 802
Sau96I	GGNCC	1 cut(s)	387
ScaI	AGTACT	3 cut(s)	30, 39, 368
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	355
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	370, 798
SmoI	CTYRAG	2 cut(s)	370, 798
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	6 cut(s)	70, 400, 452, 615, 636, 696
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	3 cut(s)	243, 303, 519
SspMI	CTAG	4 cut(s)	26, 35, 834, 866
SstI	GAGCTC	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	1 cut(s)	307
TaqI	TCGA	1 cut(s)	486
TasI	AATT	6 cut(s)	70, 400, 452, 615, 636, 696
TatI	WGTACW	4 cut(s)	28, 37, 288, 366
TauI	GCSGC	2 cut(s)	306, 521
TfiI	GAWTC	1 cut(s)	312
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	100, 463, 571
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	2 cut(s)	515, 521
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	4 cut(s)	64, 483, 732, 800
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	3 cut(s)	100, 463, 571
VpaK11BI	GGWCC	1 cut(s)	387
XapI	RAATTY	2 cut(s)	400, 452
XspI	CTAG	4 cut(s)	26, 35, 834, 866
ZrmI	AGTACT	3 cut(s)	30, 39, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.