Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Reverse (-)

25060688 .. 25061195

Gene Structure 508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTTTTCCAAGCTTGTAATATTCATACTGGTAAGCTTAGCAGCAGCAGAAGATCTCAGTTTCATCTACAATGGTTTCCGCTCTGATAACCTTAGCCTAGACGGCATTGCAGGAGTCACACCCAATGAAACCTTCAAGAACTCATCTAATGGCACAGTTTTCTCCTTCTCTACCACTTTTGTCTTCGCTATTAGATCAGAATATGCAGATCTGAGTGCCCATGGCATGGCTTTCGTTGTTGCTCCAACAAGAGGCCTTCCGGGAGCTCTTCCAAGACAGTACCTTGGCCTTTTCAATGAGACCAACAATGGCAATGCCACCAATCATGTTTTTGCTTTAGAGATCAACACCAATCATGTTTTTGCCACCAAGATGAATGGCAAGGCTCAAGAGCTCTCACAACTTCCCAAGCTGCCTCGAATAGGAGCTGACAAAATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

148

Amino Acids

15.98

Weight (kDa)

6.83

Isoelectric Point (pI)

19.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccBSI	CCGCTC	1 cut(s)	81
AciI	CCGC	1 cut(s)	79
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	226, 251, 422
AgsI	TTSAA	2 cut(s)	136, 295
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	13, 36, 266, 394, 412, 428
AluI	AGCT	6 cut(s)	13, 36, 266, 394, 412, 428
Alw21I	GWGCWC	2 cut(s)	268, 396
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	253, 286
ApeKI	GCWGC	3 cut(s)	41, 44, 412
AsuC2I	CCSGG	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	2 cut(s)	268, 396
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	268, 396
BbvI	GCAGC	3 cut(s)	53, 56, 399
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	98
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	2 cut(s)	52, 208
BisI	GCNGC	3 cut(s)	42, 45, 413
BlpI	GCTNAGC	1 cut(s)	37
BlsI	GCNGC	3 cut(s)	43, 46, 414
Bme1390I	CCNGG	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	220, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 251, 422
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	2 cut(s)	105, 319
BseDI	CCNNGG	2 cut(s)	220, 283
BseLI	CCNNNNNNNGG	3 cut(s)	226, 251, 422
BseMI	GCAATG	2 cut(s)	105, 319
BseMII	CTCAG	2 cut(s)	70, 203
BseNI	ACTGG	1 cut(s)	33
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	53, 56, 399
BshFI	GGCC	2 cut(s)	255, 288
BsiHKAI	GWGCWC	2 cut(s)	268, 396
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	226, 251, 422
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	255, 288
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	3 cut(s)	220, 268, 396
Bsp143I	GATC	4 cut(s)	52, 194, 208, 342
Bsp1720I	GCTNAGC	1 cut(s)	37
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	255, 288
BspCNI	CTCAG	2 cut(s)	69, 204
BspQI	GCTCTTC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	293
BsrBI	CCGCTC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	105, 319
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	220, 283
BssMI	GATC	4 cut(s)	52, 194, 208, 342
BssT1I	CCWWGG	2 cut(s)	220, 283
Bst4CI	ACNGT	2 cut(s)	157, 279
Bst6I	CTCTTC	1 cut(s)	273
BstDEI	CTNAG	4 cut(s)	37, 56, 92, 212
BstDSI	CCRYGG	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	420
BstKTI	GATC	4 cut(s)	55, 197, 211, 345
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	52, 194, 208, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	3 cut(s)	53, 56, 399
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	52, 208
BstYI	RGATCY	2 cut(s)	52, 208
BsuRI	GGCC	2 cut(s)	255, 288
BtgI	CCRYGG	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	221, 226, 326, 356
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	4 cut(s)	37, 56, 92, 212
DpnI	GATC	4 cut(s)	54, 196, 210, 344
DpnII	GATC	4 cut(s)	52, 194, 208, 342
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	2 cut(s)	266, 394
Eco130I	CCWWGG	2 cut(s)	220, 283
Eco147I	AGGCCT	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	268, 396
Eco31I	GGTCTC	1 cut(s)	293
Eco53kI	GAGCTC	2 cut(s)	266, 394
EcoICRI	GAGCTC	2 cut(s)	266, 394
EcoNI	CCTNNNNNAGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	220, 283
EcoT38I	GRGCYC	2 cut(s)	268, 396
ErhI	CCWWGG	2 cut(s)	220, 283
FaeI	CATG	4 cut(s)	224, 229, 329, 359
FaiI	YATR	7 cut(s)	26, 204, 222, 227, 327, 357, 439
FatI	CATG	4 cut(s)	220, 225, 325, 355
Fnu4HI	GCNGC	3 cut(s)	42, 45, 413
FriOI	GRGCYC	2 cut(s)	268, 396
Fsp4HI	GCNGC	3 cut(s)	42, 45, 413
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	3 cut(s)	42, 45, 413
HaeIII	GGCC	2 cut(s)	255, 288
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	4 cut(s)	224, 229, 329, 359
HindIII	AAGCTT	2 cut(s)	11, 34
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	85, 199, 213
Hpy188III	TCNNGA	2 cut(s)	136, 389
HpyAV	CCTTC	3 cut(s)	142, 175, 266
HpyCH4III	ACNGT	2 cut(s)	157, 279
HpyCH4V	TGCA	2 cut(s)	110, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	4 cut(s)	37, 56, 92, 212
Hsp92II	CATG	4 cut(s)	224, 229, 329, 359
Kzo9I	GATC	4 cut(s)	52, 194, 208, 342
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	3 cut(s)	247, 263, 425
LpnPI	CCDG	3 cut(s)	14, 96, 273
Lsp1109I	GCAGC	3 cut(s)	53, 56, 399
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	4 cut(s)	54, 196, 210, 344
MbiI	CCGCTC	1 cut(s)	81
MboI	GATC	4 cut(s)	52, 194, 208, 342
MboII	GAAGA	3 cut(s)	62, 175, 260
MflI	RGATCY	2 cut(s)	52, 208
MhlI	GDGCHC	3 cut(s)	220, 268, 396
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	245, 426
MseI	TTAA	1 cut(s)	442
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	261
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	4 cut(s)	52, 194, 208, 342
NlaIII	CATG	4 cut(s)	224, 229, 329, 359
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	273
PflMI	CCANNNNNTGG	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	43, 46, 414
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp124BI	GAGCTC	2 cut(s)	268, 396
PsuI	RGATCY	2 cut(s)	52, 208
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	2 cut(s)	268, 396
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	442
SatI	GCNGC	3 cut(s)	42, 45, 413
Sau3AI	GATC	4 cut(s)	52, 194, 208, 342
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	3 cut(s)	220, 268, 396
SetI	ASST	9 cut(s)	15, 38, 93, 134, 268, 285, 396, 414, 430
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	79
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	2 cut(s)	268, 396
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	2 cut(s)	220, 283
TaaI	ACNGT	2 cut(s)	157, 279
TaqI	TCGA	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	41, 44, 412
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	4 cut(s)	13, 52, 141, 389
Van91I	CCANNNNNTGG	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	420
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.