Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

3226265 .. 3226606

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATGCGCCCTCATGTGCTCCTCGCGTTGCTTGCTCTTCTTGTTCCTCTTGTTGTTGCCGATCGTATTGTTGTTTGGAAGCCTATAAACAGCACTAGCGACCTAATGGTGGTAGACACTGCAAATTTTGCGGTCTCTGAACACAACAAGGAAGCCAAAACAAACCTCGTATTTGAAAGTGTGGTCGAGGGCAGATATCAAGTTAATGCAGGCATCTATTACGAACTTGTTGTCAAGGCCAAGAATGACTCTTCACCGGCCTCTACTGCAAATTATGTTACCGTTGTCTGGGACCACCATCTAGGCGTCAGGCATTTGATAGACTTTTATAAAAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

6.5

Isoelectric Point (pI)

21.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	29 - 109	3e-22	Aspartic acid proteinase inhibitor
Cystatin	PF00031	30 - 93	1.2e-07	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	131
AcsI	RAATTY	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	109, 288
AgsI	TTSAA	1 cut(s)	176
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	139
AoxI	GGCC	2 cut(s)	237, 258
ApoI	RAATTY	1 cut(s)	124
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	2 cut(s)	96, 302
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 288
Bse118I	RCCGGY	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	109, 288
BseRI	GAGGAG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	239, 260
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	109, 288
BsmAI	GTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	239, 260
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	239, 260
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	293
BspQI	GCTCTTC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssMI	GATC	1 cut(s)	61
BssNI	GRCGYC	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	2 cut(s)	42, 256
BstACI	GRCGYC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	33, 211
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 128, 266
BstUI	CGCG	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	239, 260
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	33, 211
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	295
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	82, 155, 239, 260
CviKI_1	RGCY	4 cut(s)	82, 155, 239, 260
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	42, 256
EarI	CTCTTC	2 cut(s)	42, 256
Eco31I	GGTCTC	1 cut(s)	139
Eco32I	GATATC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	197
FaeI	CATG	1 cut(s)	17
FaiI	YATR	4 cut(s)	15, 86, 276, 330
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	114
FspBI	CTAG	2 cut(s)	96, 302
GlaI	GCGC	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	239, 260
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	122, 209, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 128, 266
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	4 cut(s)	195, 270, 274, 295
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	96, 302
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	29, 243
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	124, 271
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	21, 32, 57, 176, 181, 271
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	32, 128, 266
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	42
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	292
PvuI	CGATCG	1 cut(s)	64
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	2 cut(s)	105, 168
SfaNI	GCATC	1 cut(s)	222
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	124, 271
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	96, 302
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	124, 271
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	124
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	96, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.