Rorug03G0078600

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
6157341 .. 6157970
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0078600.1

Sequence Viewer

Length: 630 bp
ATGGGAACAGCTGTGGGCGCAGTCGACAACAAGGAGACAGCTCGAAGCTTAGCTGATCTGAATCCTAGTGTAGTGTTTGTCTTGGGTGGTCCAGGCAGTGGAAAGGGTACCCAATGTGCAAACATTGTTAAGCATTTTGGGTACACCCATCTCAGTGCTGGTGATCTTCTACGAGCTGAAAGGAATTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATCAAAGAAGGACAAATTGTTCCTGCGGTGGTGACGATTAAACTTCTGGAGCGAGCAATGCTGGAGAGTGGTAATGACAAGTTTCTCATCGATGGGTTTCCTCGTAATGAAGAAAACCGTGCTGCATTTGAGGATGTGACTAAAATCGTGCCCTCATTCGTCCTGTATTTTGTTTGTTCTGAAGAAGAGATGGAGAGGCGCCTTTTGAGTAGGAACCAGGGAAGAGAGGATGATAATGTAGAAACAATAAGGAAGAGGTTTAAGGTTTTTCTAGAGTCTACTGAAAAAGTTTTAGAGTACTATAACGCCCAGGGGAAGGTTCGAAAGATTGATGCTGGGAGGCCTATTGAAGAGGTTTTCGAGTCAGTGAAAGGCATTTTTGGCCCCAAAAATGAGAAGGCCGATTAG

Protein Analysis

209

Amino Acids

23.15

Weight (kDa)

5.64

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_33 PF13671 24 - 164 2e-08 AAA domain
AAA_18 PF13238 25 - 153 2.2e-07 AAA domain
ADK PF00406 27 - 179 2e-44 Adenylate kinase
AAA_17 PF13207 28 - 158 2.4e-35 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07460 AT1G07460
fragaria_vesca FvH4_6g13200
malus_domestica MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 2 cut(s) 107, 420
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 2 cut(s) 24, 500
AciI CCGC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 421
AfaI GTAC 3 cut(s) 109, 143, 521
AfiI CCNNNNNNNGG 2 cut(s) 98, 538
AgsI TTSAA 1 cut(s) 572
AjnI CCWGG 3 cut(s) 91, 438, 531
AloI GAACNNNNNNTCC 4 cut(s) 175, 207, 225, 257
AluBI AGCT 5 cut(s) 11, 41, 48, 53, 176
AluI AGCT 5 cut(s) 11, 41, 48, 53, 176
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 3 cut(s) 563, 604, 621
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 184
Asp718I GGTACC 1 cut(s) 107
AspLEI GCGC 2 cut(s) 20, 423
AspS9I GGNCC 2 cut(s) 89, 605
AsuHPI GGTGA 2 cut(s) 173, 265
AsuII TTCGAA 2 cut(s) 215, 544
AvaII GGWCC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 2 cut(s) 107, 420
BbvI GCAGC 1 cut(s) 331
BccI CCATC 3 cut(s) 156, 308, 406
BciT130I CCWGG 3 cut(s) 93, 440, 533
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 2 cut(s) 66, 494
BfoI RGCGCY 1 cut(s) 424
BisI GCNGC 1 cut(s) 345
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 346
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 3 cut(s) 93, 440, 533
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 605
BmiI GGNNCC 5 cut(s) 109, 205, 422, 437, 607
BmrFI CCNGG 3 cut(s) 93, 440, 533
BmsI GCATC 1 cut(s) 544
BpmI CTGGAG 2 cut(s) 290, 305
Bpu1102I GCTNAGC 1 cut(s) 49
Bpu14I TTCGAA 2 cut(s) 215, 544
Bsa29I ATCGAT 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 421
BsaJI CCNNGG 3 cut(s) 439, 531, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 538
Bse3DI GCAATG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 3 cut(s) 93, 440, 533
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 439, 531, 532
BseGI GGATG 2 cut(s) 361, 457
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 98, 538
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 331
BseYI CCCAGC 1 cut(s) 557
BshFI GGCC 3 cut(s) 565, 606, 623
BshNI GGYRCC 2 cut(s) 107, 420
BshVI ATCGAT 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 98, 538
BsmAI GTCTC 1 cut(s) 29
BsnI GGCC 3 cut(s) 565, 606, 623
Bsp119I TTCGAA 2 cut(s) 215, 544
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 3 cut(s) 55, 163, 222
Bsp1720I GCTNAGC 1 cut(s) 49
BspACI CCGC 1 cut(s) 248
BspANI GGCC 3 cut(s) 565, 606, 623
BspCNI CTCAG 1 cut(s) 165
BspDI ATCGAT 1 cut(s) 312
BspLI GGNNCC 5 cut(s) 109, 205, 422, 437, 607
BspT104I TTCGAA 2 cut(s) 215, 544
BspT107I GGYRCC 2 cut(s) 107, 420
BsrDI GCAATG 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 439, 531, 532
BssMI GATC 3 cut(s) 55, 163, 222
BssNI GRCGYC 1 cut(s) 421
Bst2UI CCWGG 3 cut(s) 93, 440, 533
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 4 cut(s) 402, 439, 470, 567
BstACI GRCGYC 1 cut(s) 421
BstBI TTCGAA 2 cut(s) 215, 544
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 2 cut(s) 49, 152
BstF5I GGATG 2 cut(s) 361, 457
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 2 cut(s) 20, 423
BstKTI GATC 3 cut(s) 58, 166, 225
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 3 cut(s) 55, 163, 222
BstMWI GCNNNNNNNGC 3 cut(s) 17, 280, 603
BstNI CCWGG 3 cut(s) 93, 440, 533
BstSCI CCNGG 3 cut(s) 91, 438, 531
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 3 cut(s) 565, 606, 623
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 2 cut(s) 361, 457
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 103, 160, 594
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 2 cut(s) 20, 423
Cfr13I GGNCC 2 cut(s) 89, 605
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 3 cut(s) 108, 142, 520
CviAII CATG 2 cut(s) 208, 220
CviJI RGCY 8 cut(s) 11, 41, 48, 53, 176, 565, 606, 623
CviKI_1 RGCY 8 cut(s) 11, 41, 48, 53, 176, 565, 606, 623
CviQI GTAC 3 cut(s) 108, 142, 520
DdeI CTNAG 2 cut(s) 49, 152
DinI GGCGCC 1 cut(s) 422
DpnI GATC 3 cut(s) 57, 165, 224
DpnII GATC 3 cut(s) 55, 163, 222
Eam1104I CTCTTC 4 cut(s) 402, 439, 470, 567
EarI CTCTTC 4 cut(s) 402, 439, 470, 567
Eco147I AGGCCT 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 91, 438, 531
EgeI GGCGCC 1 cut(s) 422
EheI GGCGCC 1 cut(s) 422
FaeI CATG 2 cut(s) 211, 223
FaiI YATR 3 cut(s) 209, 221, 525
FatI CATG 2 cut(s) 207, 219
FbaI TGATCA 1 cut(s) 222
FblI GTMKAC 2 cut(s) 24, 500
Fnu4HI GCNGC 1 cut(s) 345
FokI GGATG 2 cut(s) 368, 464
Fsp4HI GCNGC 1 cut(s) 345
FspBI CTAG 2 cut(s) 66, 494
GlaI GCGC 2 cut(s) 19, 422
GluI GCNGC 1 cut(s) 345
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 2 cut(s) 290, 305
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 3 cut(s) 565, 606, 623
HhaI GCGC 2 cut(s) 20, 423
Hin1I GRCGYC 1 cut(s) 421
Hin1II CATG 2 cut(s) 211, 223
Hin6I GCGC 2 cut(s) 18, 421
HinP1I GCGC 2 cut(s) 18, 421
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 46
HinfI GANTC 3 cut(s) 61, 497, 584
HphI GGTGA 2 cut(s) 173, 265
Hpy166II GTNNAC 3 cut(s) 25, 144, 501
Hpy188I TCNGA 3 cut(s) 60, 196, 403
Hpy188III TCNNGA 2 cut(s) 269, 494
Hpy8I GTNNAC 3 cut(s) 25, 144, 501
HpyAV CCTTC 3 cut(s) 224, 532, 613
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 119, 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 280, 603
HpyF3I CTNAG 2 cut(s) 49, 152
Hsp92I GRCGYC 1 cut(s) 421
Hsp92II CATG 2 cut(s) 211, 223
HspAI GCGC 2 cut(s) 18, 421
KasI GGCGCC 1 cut(s) 420
KpnI GGTACC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 3 cut(s) 55, 163, 222
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 544
MaeI CTAG 2 cut(s) 66, 494
MaeIII GTNAC 2 cut(s) 253, 358
MalI GATC 3 cut(s) 57, 165, 224
MboI GATC 3 cut(s) 55, 163, 222
MboII GAAGA 7 cut(s) 158, 344, 416, 419, 456, 487, 584
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 2 cut(s) 184, 237
Mly113I GGCGCC 1 cut(s) 421
MlyI GAGTC 2 cut(s) 506, 593
MnlI CCTC 8 cut(s) 333, 346, 385, 411, 442, 471, 555, 568
MseI TTAA 3 cut(s) 129, 261, 483
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 11
MspR9I CCNGG 3 cut(s) 93, 440, 533
MvaI CCWGG 3 cut(s) 93, 440, 533
MwoI GCNNNNNNNGC 3 cut(s) 17, 280, 603
NarI GGCGCC 1 cut(s) 421
NdeII GATC 3 cut(s) 55, 163, 222
NlaIII CATG 2 cut(s) 211, 223
NlaIV GGNNCC 5 cut(s) 109, 205, 422, 437, 607
NmuCI GTSAC 2 cut(s) 253, 358
NspV TTCGAA 2 cut(s) 215, 544
PasI CCCWGGG 1 cut(s) 532
PceI AGGCCT 1 cut(s) 565
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 1 cut(s) 346
PleI GAGTC 2 cut(s) 505, 592
PluTI GGCGCC 1 cut(s) 424
PpsI GAGTC 2 cut(s) 505, 592
Psp6I CCWGG 3 cut(s) 91, 438, 531
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 3 cut(s) 91, 438, 531
PspN4I GGNNCC 5 cut(s) 109, 205, 422, 437, 607
PspPI GGNCC 2 cut(s) 89, 605
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 109, 143, 521
RsaNI GTAC 3 cut(s) 108, 142, 520
RseI CAYNNNNRTG 1 cut(s) 153
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 129, 261, 483
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 3 cut(s) 55, 163, 222
Sau96I GGNCC 2 cut(s) 89, 605
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 506, 593
ScrFI CCNGG 3 cut(s) 93, 440, 533
SduI GDGCHC 1 cut(s) 375
SetI ASST 9 cut(s) 13, 43, 50, 55, 178, 482, 489, 543, 579
SfaNI GCATC 1 cut(s) 544
SfoI GGCGCC 1 cut(s) 422
SfuI TTCGAA 2 cut(s) 215, 544
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 2 cut(s) 184, 237
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 1 cut(s) 248
SspDI GGCGCC 1 cut(s) 420
SspMI CTAG 2 cut(s) 66, 494
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 3 cut(s) 91, 438, 531
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 6 cut(s) 24, 43, 215, 312, 544, 582
TasI AATT 2 cut(s) 184, 237
TatI WGTACW 1 cut(s) 519
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 3 cut(s) 129, 261, 483
Tru9I TTAA 3 cut(s) 129, 261, 483
TscAI CASTG 3 cut(s) 103, 160, 594
TseFI GTSAC 2 cut(s) 253, 358
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 2 cut(s) 253, 358
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 3 cut(s) 103, 160, 594
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 184
XbaI TCTAGA 1 cut(s) 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XmiI GTMKAC 2 cut(s) 24, 500
XspI CTAG 2 cut(s) 66, 494
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.