Rh3BG145600

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
12328858 .. 12331320
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG145600.1

Sequence Viewer

Length: 1308 bp
ATGTTTGTCAAGCTTTCTGTTCTACTAGTACTACTTGTCAGTCTGGTACCAGCAGAAGCCCAAGACCTCAATGTCATCTACAATTCTGGTTTCAATGGCCGTTCTGGTCTTAATCTCAGTCTAGACGGCGTAGCAGAGATCACACCAAAAGGTCTCCTGAAGCTTACAAACGACACCAGACAGAAAAGTGGCCATGCCTTCTACCCTAACCCAGTAACCTTCAAGAACTCAGAGAACGACACCGCCTTCTCCTTCTCCACCAACTTTGTGTTTGCCATCCGATCACTGTACGGTACTCTCAGCGGCAATGGAATCGCCTTTGTCATCGCTCCGACGAGGGGCCTCCCCGGAGCTCTGCCGAACCAGTACCTGAGCCTGTTCAATCCCTCCAACAATGGGAATTTCACCAATCATGTTTTTGCTGTGGAGCTTGACACGGTCAAGAACGCGGAATTCAGTGACATCAATGATAACCATGTTGGGATAGACATCAATGGCTTGCACTCTGTCCAAGCTGCTCCAGCTGGTTATTTTGTTGGTCAGTACTTCAAGAACCTGACTCTTAACAATGGTAAAGAAATGAGAGTCTGGGTTGAATATGATGGTACCAACAAGCAAATTGAAGTTACTATGGCTCCAATTGCTGTTGCAACTAAACCCCCAATTCCACTTTTGTCTTTGAAATATGACCTTTCCCCAATTCTCAACAAAACCATGTATGTCGGCTTTTCTTCTTCAACTGGTACGTTTCTCACATCCCATTATGTAGTGGGTTGGAGCTTTAGGATGAATGGCCAAGCTCAAGACCTTATAGCTTCCAAACTTCCCAAGTTGCCTAGCATTGCAGGTAAAAAGAGGTCCATGCTTTTCACCTTTGGTGTGCCTCTGATTTCCGTGAGTTTGGTTTTGCTAGTGGTTTCTGGGGTGCTTTATGTCATAAGAAGGAAGAGGAAGTTTGCAGAAGTGCTTGAAGATTGGGAGCTAGAGAGTAACATCCTTGAGGCAAGAGATCAGAGCTTTGGTACGGATTTTGTAGCTGAGGAAGTGGAGTTGGTGTTGAAGCTTGGGCTTTTGTGCTCTCATTCAGAGCCAGCGGCAAGGCCAAGCATGCGACAAGTCGTTCTGTACTTGGCCGGTGATGTTGCTTTACCAGAAGTGTCACTTCTCGGGCTTTCTTCTAGTGGCTTAATGGTTGGACACCATGAAGGTTTTGATGACTATGCTATGTCGTATCAGTCTTCTTTAGGCAGTAAGTTCTCCCATTCATCATGTGTTGCAGAGTCGGCACTACTTTCGGGTGGTCGTTGA

Protein Analysis

435

Amino Acids

47.27

Weight (kDa)

6.32

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 29 - 276 7.8e-82 Legume lectin domain
Lectin_L-type_dom PF18483 40 - 254 1.5e-09 Legume lectin beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07460 AT1G07460
fragaria_vesca FvH4_6g13200
malus_domestica MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 836
Acc65I GGTACC 2 cut(s) 46, 605
AccB1I GGYRCC 2 cut(s) 46, 605
AccII CGCG 1 cut(s) 449
AciI CCGC 4 cut(s) 243, 303, 449, 1094
AcoI YGGCCR 4 cut(s) 97, 190, 793, 1131
AcsI RAATTY 2 cut(s) 400, 452
AcuI CTGAAG 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 338, 396
AhlI ACTAGT 1 cut(s) 25
Alw21I GWGCWC 2 cut(s) 355, 1079
Alw26I GTCTC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 1166
AoxI GGCC 6 cut(s) 97, 190, 340, 793, 1100, 1131
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 400, 452
Asp718I GGTACC 2 cut(s) 46, 605
AspS9I GGNCC 2 cut(s) 340, 858
AsuC2I CCSGG 1 cut(s) 348
AsuHPI GGTGA 3 cut(s) 397, 862, 1148
AvaI CYCGRG 1 cut(s) 1166
AvaII GGWCC 1 cut(s) 858
BalI TGGCCA 2 cut(s) 192, 795
BanI GGYRCC 2 cut(s) 46, 605
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 1230
Bbv12I GWGCWC 2 cut(s) 355, 1079
BbvCI CCTCAGC 1 cut(s) 1038
BbvI GCAGC 1 cut(s) 502
BccI CCATC 2 cut(s) 284, 596
BceAI ACGGC 2 cut(s) 84, 142
BcgI CGANNNNNNTGC 3 cut(s) 295, 329, 1275
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 158
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 6 cut(s) 26, 122, 837, 911, 983, 1179
BfuAI ACCTGC 1 cut(s) 836
BisI GCNGC 3 cut(s) 304, 516, 1095
BlsI GCNGC 3 cut(s) 305, 517, 1096
BmcAI AGTACT 2 cut(s) 30, 545
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 858
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 2 cut(s) 340, 858
BmiI GGNNCC 4 cut(s) 48, 341, 607, 636
BmrFI CCNGG 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 206
BmuI ACTGGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 1230
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 2 cut(s) 371, 1038
BpuEI CTTGAG 2 cut(s) 786, 1019
BpuMI CCSGG 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 346
BsaXI ACNNNNNCTCC 4 cut(s) 619, 649, 1040, 1070
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 396
Bse118I RCCGGY 1 cut(s) 1133
Bse1I ACTGG 3 cut(s) 212, 364, 745
Bse3DI GCAATG 2 cut(s) 313, 840
Bse8I GATNNNNATC 1 cut(s) 488
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 4 cut(s) 276, 755, 792, 993
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 338, 396
BseMI GCAATG 2 cut(s) 313, 840
BseMII CTCAG 5 cut(s) 130, 243, 313, 362, 1029
BseNI ACTGG 3 cut(s) 212, 364, 745
BseXI GCAGC 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 6 cut(s) 99, 192, 342, 795, 1102, 1133
BshNI GGYRCC 2 cut(s) 46, 605
BsiHKAI GWGCWC 2 cut(s) 355, 1079
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 2 cut(s) 348, 1134
BslI CCNNNNNNNGG 2 cut(s) 338, 396
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 6 cut(s) 99, 192, 342, 795, 1102, 1133
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 2 cut(s) 355, 1079
Bsp143I GATC 3 cut(s) 138, 281, 1009
BspACI CCGC 4 cut(s) 243, 303, 449, 1094
BspANI GGCC 6 cut(s) 99, 192, 342, 795, 1102, 1133
BspCNI CTCAG 5 cut(s) 129, 242, 312, 363, 1030
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 4 cut(s) 48, 341, 607, 636
BspMI ACCTGC 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 46, 605
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 313, 840
BsrFI RCCGGY 1 cut(s) 1133
BsrI ACTGG 3 cut(s) 212, 364, 745
BssAI RCCGGY 1 cut(s) 1133
BssECI CCNNGG 1 cut(s) 346
BssMI GATC 3 cut(s) 138, 281, 1009
Bst4CI ACNGT 3 cut(s) 288, 293, 439
Bst6I CTCTTC 1 cut(s) 941
BstC8I GCNNGC 3 cut(s) 500, 1092, 1109
BstDEI CTNAG 5 cut(s) 116, 229, 299, 371, 1038
BstF5I GGATG 4 cut(s) 276, 755, 792, 993
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 3 cut(s) 141, 284, 1012
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 138, 281, 1009
BstMWI GCNNNNNNNGC 4 cut(s) 521, 641, 1108, 1283
BstNSI RCATGY 1 cut(s) 1111
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 1230
BsuRI GGCC 6 cut(s) 99, 192, 342, 795, 1102, 1133
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 4 cut(s) 276, 755, 792, 993
BtsIMutI CAGTG 2 cut(s) 284, 463
BveI ACCTGC 1 cut(s) 836
Cac8I GCNNGC 3 cut(s) 500, 1092, 1109
CaiI CAGNNNCTG 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 1133
Cfr13I GGNCC 2 cut(s) 340, 858
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 8 cut(s) 194, 413, 476, 715, 862, 1108, 1202, 1269
DdeI CTNAG 5 cut(s) 116, 229, 299, 371, 1038
DpnI GATC 3 cut(s) 140, 283, 1011
DpnII GATC 3 cut(s) 138, 281, 1009
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 4 cut(s) 97, 190, 793, 1131
Eam1104I CTCTTC 1 cut(s) 941
EarI CTCTTC 1 cut(s) 941
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 858
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 1166
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 452
EcoT38I GRGCYC 1 cut(s) 355
FaeI CATG 8 cut(s) 197, 416, 479, 718, 865, 1111, 1205, 1272
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FatI CATG 8 cut(s) 193, 412, 475, 714, 861, 1107, 1201, 1268
Fnu4HI GCNGC 3 cut(s) 304, 516, 1095
FokI GGATG 4 cut(s) 263, 742, 799, 980
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 3 cut(s) 304, 516, 1095
FspBI CTAG 6 cut(s) 26, 122, 837, 911, 983, 1179
GluI GCNGC 3 cut(s) 304, 516, 1095
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 6 cut(s) 99, 192, 342, 795, 1102, 1133
HapII CCGG 2 cut(s) 348, 1134
Hin1II CATG 8 cut(s) 197, 416, 479, 718, 865, 1111, 1205, 1272
HindIII AAGCTT 3 cut(s) 11, 161, 1061
HinfI GANTC 4 cut(s) 312, 559, 585, 1280
HpaII CCGG 2 cut(s) 348, 1134
HphI GGTGA 3 cut(s) 397, 862, 1148
Hpy188I TCNGA 6 cut(s) 232, 281, 333, 888, 1014, 1087
Hpy188III TCNNGA 6 cut(s) 122, 157, 223, 442, 550, 803
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 6 cut(s) 208, 229, 256, 262, 936, 1199
HpyCH4III ACNGT 3 cut(s) 288, 293, 439
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 5 cut(s) 502, 650, 845, 959, 1277
HpyF10VI GCNNNNNNNGC 4 cut(s) 521, 641, 1108, 1283
HpyF3I CTNAG 5 cut(s) 116, 229, 299, 371, 1038
HpySE526I ACGT 1 cut(s) 746
Hsp92II CATG 8 cut(s) 197, 416, 479, 718, 865, 1111, 1205, 1272
KpnI GGTACC 2 cut(s) 50, 609
Kzo9I GATC 3 cut(s) 138, 281, 1009
LmnI GCTCC 7 cut(s) 334, 350, 427, 523, 640, 777, 979
Lsp1109I GCAGC 1 cut(s) 502
MaeI CTAG 6 cut(s) 26, 122, 837, 911, 983, 1179
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 5 cut(s) 214, 458, 625, 989, 1158
MalI GATC 3 cut(s) 140, 283, 1011
MboI GATC 3 cut(s) 138, 281, 1009
MboII GAAGA 6 cut(s) 723, 726, 958, 983, 1167, 1230
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 355, 1079
MlsI TGGCCA 2 cut(s) 192, 795
MluCI AATT 7 cut(s) 82, 400, 452, 618, 639, 663, 699
MluNI TGGCCA 2 cut(s) 192, 795
MlyI GAGTC 3 cut(s) 553, 594, 1289
MmeI TCCRAC 4 cut(s) 356, 414, 755, 1174
MnlI CCTC 9 cut(s) 77, 330, 353, 397, 849, 894, 942, 994, 1033
Mox20I TGGCCA 2 cut(s) 192, 795
MscI TGGCCA 2 cut(s) 192, 795
MseI TTAA 3 cut(s) 111, 564, 1187
Msp20I TGGCCA 2 cut(s) 192, 795
MspA1I CMGCKG 3 cut(s) 303, 524, 1094
MspI CCGG 2 cut(s) 348, 1134
MspR9I CCNGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 639
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 521, 641, 1108, 1283
NciI CCSGG 1 cut(s) 348
NdeII GATC 3 cut(s) 138, 281, 1009
NlaIII CATG 8 cut(s) 197, 416, 479, 718, 865, 1111, 1205, 1272
NlaIV GGNNCC 4 cut(s) 48, 341, 607, 636
NmuCI GTSAC 2 cut(s) 458, 1158
NspI RCATGY 1 cut(s) 1111
PaeI GCATGC 1 cut(s) 1111
PfeI GAWTC 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 437
PkrI GCNGC 3 cut(s) 305, 517, 1096
PleI GAGTC 3 cut(s) 553, 593, 1288
PpsI GAGTC 3 cut(s) 553, 593, 1288
Psp124BI GAGCTC 1 cut(s) 355
PspN4I GGNNCC 4 cut(s) 48, 341, 607, 636
PspPI GGNCC 2 cut(s) 340, 858
PstNI CAGNNNCTG 1 cut(s) 370
PsyI GACNNNGTC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 3 cut(s) 111, 564, 1187
SatI GCNGC 3 cut(s) 304, 516, 1095
Sau3AI GATC 3 cut(s) 138, 281, 1009
Sau96I GGNCC 2 cut(s) 340, 858
ScaI AGTACT 2 cut(s) 30, 545
SchI GAGTC 3 cut(s) 553, 594, 1289
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 2 cut(s) 355, 1079
SinI GGWCC 1 cut(s) 858
SmlI CTYRAG 2 cut(s) 801, 998
SmoI CTYRAG 2 cut(s) 801, 998
SpeI ACTAGT 1 cut(s) 25
SphI GCATGC 1 cut(s) 1111
Sse9I AATT 7 cut(s) 82, 400, 452, 618, 639, 663, 699
SsiI CCGC 4 cut(s) 243, 303, 449, 1094
SspMI CTAG 6 cut(s) 26, 122, 837, 911, 983, 1179
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 3 cut(s) 288, 293, 439
TaiI ACGT 1 cut(s) 749
TasI AATT 7 cut(s) 82, 400, 452, 618, 639, 663, 699
TatI WGTACW 3 cut(s) 28, 543, 1125
TauI GCSGC 2 cut(s) 306, 1097
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 3 cut(s) 111, 564, 1187
Tru9I TTAA 3 cut(s) 111, 564, 1187
TscAI CASTG 2 cut(s) 291, 463
TseFI GTSAC 2 cut(s) 458, 1158
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 2 cut(s) 458, 1158
TspDTI ATGAA 3 cut(s) 803, 1218, 1254
TspGWI ACGGA 2 cut(s) 883, 1040
TspRI CASTG 2 cut(s) 291, 463
Tth111I GACNNNGTC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 858
XapI RAATTY 2 cut(s) 400, 452
XbaI TCTAGA 1 cut(s) 121
XceI RCATGY 1 cut(s) 1111
XspI CTAG 6 cut(s) 26, 122, 837, 911, 983, 1179
ZrmI AGTACT 2 cut(s) 30, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.