Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

6187604 .. 6188182

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0078900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGAACAGCTGTGGGCGCAGTCGACAACAAGGAGACAGCTCGAAGCTTAGCTGATCTGAATCCTAGTGTAGTGTTTGTCTTGGGTGGTCCAGGCAGTGGAAAGGGTACCCAATGTGCAAACATTGTTAAGCATTTTGGGTACACCCATCTCAGTGCTGGTGATCTTCTACGAGCTGAAAGGAATTCTGGTTCTGAAAATGGAACCATGATTTCGAACATGATCAAAGAAGGACAAATTGTTCCTGCGGTGGTGACGATTAAGCTTCTGGAGCGAGCAATGCTGGAGAGTGGTAATGACAAGTTTCTCATCGATGGGTTTCCTCGTAATGAAGAAAACCGTGCTGCATTTGAGGATGTGACTAAAATCGTGCCCTCATTCGTCCTGTATTTTGATTGTTCTGAAGAAGAGATGGAGAGGCGCCTTTTGAGTAGGAACCAGGGAAGAGAGGATGATAATGTAGAAACAATAAGGAAGAGATTGGTGATTTCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.12

Weight (kDa)

5.3

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	24 - 152	1.2e-08	AAA domain
AAA_18	PF13238	25 - 153	4.4e-08	AAA domain
ADK	PF00406	27 - 162	1.2e-39	Adenylate kinase
AAA_17	PF13207	28 - 158	1.7e-36	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	107, 420
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	109, 143
AfiI	CCNNNNNNNGG	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	91, 438
AloI	GAACNNNNNNTCC	4 cut(s)	175, 207, 225, 257
AluBI	AGCT	6 cut(s)	11, 41, 48, 53, 176, 265
AluI	AGCT	6 cut(s)	11, 41, 48, 53, 176, 265
Alw26I	GTCTC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	184
Asp718I	GGTACC	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	20, 423
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	173, 265, 496
AsuII	TTCGAA	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	375
BanI	GGYRCC	2 cut(s)	107, 420
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	156, 308, 406
BciT130I	CCWGG	2 cut(s)	93, 440
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	2 cut(s)	93, 440
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	4 cut(s)	109, 205, 422, 437
BmrFI	CCNGG	2 cut(s)	93, 440
BpmI	CTGGAG	2 cut(s)	290, 305
Bpu1102I	GCTNAGC	1 cut(s)	49
Bpu14I	TTCGAA	1 cut(s)	215
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	93, 440
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	439
BseGI	GGATG	2 cut(s)	361, 457
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	331
BshNI	GGYRCC	2 cut(s)	107, 420
BshVI	ATCGAT	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	55, 163, 222
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	165
BspDI	ATCGAT	1 cut(s)	312
BspLI	GGNNCC	4 cut(s)	109, 205, 422, 437
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	107, 420
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	439
BssMI	GATC	3 cut(s)	55, 163, 222
BssNI	GRCGYC	1 cut(s)	421
Bst2UI	CCWGG	2 cut(s)	93, 440
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	3 cut(s)	402, 439, 470
BstACI	GRCGYC	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	49, 152
BstF5I	GGATG	2 cut(s)	361, 457
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	20, 423
BstKTI	GATC	3 cut(s)	58, 166, 225
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	55, 163, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 271, 280
BstNI	CCWGG	2 cut(s)	93, 440
BstSCI	CCNGG	2 cut(s)	91, 438
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	312
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	361, 457
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 160
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	2 cut(s)	20, 423
Cfr13I	GGNCC	1 cut(s)	89
ClaI	ATCGAT	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	108, 142
CviAII	CATG	2 cut(s)	208, 220
CviJI	RGCY	6 cut(s)	11, 41, 48, 53, 176, 265
CviKI_1	RGCY	6 cut(s)	11, 41, 48, 53, 176, 265
CviQI	GTAC	2 cut(s)	108, 142
DdeI	CTNAG	2 cut(s)	49, 152
DinI	GGCGCC	1 cut(s)	422
DpnI	GATC	3 cut(s)	57, 165, 224
DpnII	GATC	3 cut(s)	55, 163, 222
Eam1104I	CTCTTC	3 cut(s)	402, 439, 470
EarI	CTCTTC	3 cut(s)	402, 439, 470
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	91, 438
EgeI	GGCGCC	1 cut(s)	422
EheI	GGCGCC	1 cut(s)	422
FaeI	CATG	2 cut(s)	211, 223
FaiI	YATR	2 cut(s)	209, 221
FatI	CATG	2 cut(s)	207, 219
FbaI	TGATCA	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	368, 464
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	2 cut(s)	19, 422
GluI	GCNGC	1 cut(s)	345
GsuI	CTGGAG	2 cut(s)	290, 305
HaeII	RGCGCY	1 cut(s)	424
HhaI	GCGC	2 cut(s)	20, 423
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	211, 223
Hin6I	GCGC	2 cut(s)	18, 421
HinP1I	GCGC	2 cut(s)	18, 421
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	2 cut(s)	46, 263
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	3 cut(s)	173, 265, 496
Hpy166II	GTNNAC	2 cut(s)	25, 144
Hpy188I	TCNGA	3 cut(s)	60, 196, 403
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	2 cut(s)	25, 144
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	2 cut(s)	119, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 271, 280
HpyF3I	CTNAG	2 cut(s)	49, 152
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	211, 223
HspAI	GCGC	2 cut(s)	18, 421
KasI	GGCGCC	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	55, 163, 222
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	253, 358
MalI	GATC	3 cut(s)	57, 165, 224
MboI	GATC	3 cut(s)	55, 163, 222
MboII	GAAGA	6 cut(s)	158, 344, 416, 419, 456, 487
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	184, 237
Mly113I	GGCGCC	1 cut(s)	421
MnlI	CCTC	5 cut(s)	333, 346, 385, 411, 442
MseI	TTAA	2 cut(s)	129, 261
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	93, 440
MvaI	CCWGG	2 cut(s)	93, 440
MwoI	GCNNNNNNNGC	3 cut(s)	17, 271, 280
NarI	GGCGCC	1 cut(s)	421
NdeII	GATC	3 cut(s)	55, 163, 222
NlaIII	CATG	2 cut(s)	211, 223
NlaIV	GGNNCC	4 cut(s)	109, 205, 422, 437
NmuCI	GTSAC	2 cut(s)	253, 358
NspV	TTCGAA	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	61
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	91, 438
PspGI	CCWGG	2 cut(s)	91, 438
PspN4I	GGNNCC	4 cut(s)	109, 205, 422, 437
PspPI	GGNCC	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	109, 143
RsaNI	GTAC	2 cut(s)	108, 142
RseI	CAYNNNNRTG	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	129, 261
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	55, 163, 222
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	93, 440
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	6 cut(s)	13, 43, 50, 55, 178, 267
SfoI	GGCGCC	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	184, 237
SsiI	CCGC	1 cut(s)	248
SspDI	GGCGCC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	91, 438
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	4 cut(s)	24, 43, 215, 312
TasI	AATT	2 cut(s)	184, 237
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	129, 261
Tru9I	TTAA	2 cut(s)	129, 261
TscAI	CASTG	2 cut(s)	103, 160
TseFI	GTSAC	2 cut(s)	253, 358
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	2 cut(s)	253, 358
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	103, 160
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.