MD12G1147100.v1.1

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
22598097 .. 22598525
429 bp
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UTR
Exon/CDS
Intron
MD12G1147100.v1.1.491

Sequence Viewer

Length: 429 bp
ATGCTTACGAATGACTCTCAAGAGATAAAGGGCCATGCCTTCTACCCTAACCCAGTCACCTTCAAGAACTCATATTCTGATACCAATGCTTTCTCATTTTCTACAACATTTGTGTTCGCTATCAGGTCGCTGCTTGCAACTGTGAGCGGTCATGGAATGGCCTTCGTCATTGCTCCGAAAAGAGGGATTCCCCAAGCTCTACATAGCCCTTTCCTAGGCCTTTTCAATCCAACCAACAATGGCAATGTCACCAATCATATTTTTGCTGTAGAGCTAGACACTATCAAGCAGATCGAGTTCAATGACATCGATAACAATCATGTAGGAATTGATATTAATGGTTTGAACTCTGTGAAATCTGCTACCGCAGGATACTATGCTGAAAACAATGGTGGGTTTTGGAACTTGCCCTCACTAGTGGTCAAGTAA

Protein Analysis

143

Amino Acids

15.5

Weight (kDa)

6.16

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 2 - 124 2.9e-42 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07460 AT1G07460
fragaria_vesca FvH4_6g13200
malus_domestica MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 147
AciI CCGC 2 cut(s) 147, 366
AfiI CCNNNNNNNGG 2 cut(s) 182, 215
AgsI TTSAA 4 cut(s) 64, 226, 301, 346
AhlI ACTAGT 1 cut(s) 415
AluBI AGCT 2 cut(s) 197, 274
AluI AGCT 2 cut(s) 197, 274
AoxI GGCC 3 cut(s) 31, 159, 217
ApeKI GCWGC 1 cut(s) 130
AseI ATTAAT 1 cut(s) 336
AspA2I CCTAGG 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 49, 241
AvrII CCTAGG 1 cut(s) 214
BbvI GCAGC 1 cut(s) 117
BciVI GTATCC 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 3 cut(s) 215, 275, 416
BfmI CTRYAG 1 cut(s) 267
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 1 cut(s) 131
BlnI CCTAGG 1 cut(s) 214
BlsI GCNGC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 215
Bse1I ACTGG 1 cut(s) 53
Bse3DI GCAATG 2 cut(s) 168, 250
Bse8I GATNNNNATC 1 cut(s) 315
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 182, 215
BseMI GCAATG 2 cut(s) 168, 250
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 117
BshFI GGCC 3 cut(s) 33, 161, 219
BshVI ATCGAT 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 182, 215
BsnI GGCC 3 cut(s) 33, 161, 219
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 2 cut(s) 147, 366
BspANI GGCC 3 cut(s) 33, 161, 219
BspDI ATCGAT 1 cut(s) 309
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 2 cut(s) 168, 250
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 214
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 213
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 309
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 33, 161, 219
BsuTUI ATCGAT 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 309
CviAII CATG 3 cut(s) 35, 152, 320
CviJI RGCY 6 cut(s) 33, 161, 197, 207, 219, 274
CviKI_1 RGCY 6 cut(s) 33, 161, 197, 207, 219, 274
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 3 cut(s) 38, 155, 323
FaiI YATR 7 cut(s) 36, 73, 153, 204, 258, 321, 378
FatI CATG 3 cut(s) 34, 151, 319
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 3 cut(s) 215, 275, 416
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 3 cut(s) 33, 161, 219
Hin1II CATG 3 cut(s) 38, 155, 323
HinfI GANTC 2 cut(s) 14, 187
HphI GGTGA 2 cut(s) 49, 241
Hpy188I TCNGA 2 cut(s) 79, 177
Hpy188III TCNNGA 2 cut(s) 20, 64
HpyAV CCTTC 3 cut(s) 49, 70, 172
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 137
Hsp92II CATG 3 cut(s) 38, 155, 323
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 66, 109, 354
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 3 cut(s) 215, 275, 416
MaeIII GTNAC 2 cut(s) 55, 247
MalI GATC 1 cut(s) 293
MbiI CCGCTC 1 cut(s) 147
MboI GATC 1 cut(s) 291
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 2 cut(s) 176, 421
MseI TTAA 1 cut(s) 336
NdeII GATC 1 cut(s) 291
NlaIII CATG 3 cut(s) 38, 155, 323
NmuCI GTSAC 2 cut(s) 55, 247
PceI AGGCCT 1 cut(s) 219
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 336
PspPI GGNCC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 8
SetI ASST 4 cut(s) 62, 128, 199, 276
SfcI CTRYAG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 1 cut(s) 327
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 2 cut(s) 147, 366
SspMI CTAG 3 cut(s) 215, 275, 416
StuI AGGCCT 1 cut(s) 219
StyI CCWWGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 294, 309
TasI AATT 1 cut(s) 327
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 2 cut(s) 55, 247
TseI GCWGC 1 cut(s) 130
Tsp45I GTSAC 2 cut(s) 55, 247
VspI ATTAAT 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 213
XmaJI CCTAGG 1 cut(s) 214
XspI CTAG 3 cut(s) 215, 275, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.