Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

12065594 .. 12066695

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTTGTCAAGCTTGTAATAATTCTCGTAGTACTAGTCGTAGCAGCAGCTGAAGATCTCAGCTTCATCTACAATGGCTTCGAGTCTGGAGAAAATATTTGGCAAGATGGCCCCGGAGGGGGAGTCATGGTTGATGGTTTATTCAAAATAACGGGTCATACCTTCTACGCCGAGCCAGTAACCTTCAAAAATGACTCATCATCCAGTTCAGAAATTTTCTCCTTCTCTACCACTTTCGTCTTCGCTATCAGATCAGAGGACCCAACAGTTAGCAGCGGCCATGGCCTCGCCTTTGTTATCTCTCCAACTCTAGGACGTCCCGGAGTTCTTCCAAGCAAGTACTTCGGCCTCTTCAATGGCTCGAACTTGGGGAATATGAACAATCATGTTTTTGCTGTGGAGCTCGACACCATTAAGAGCACGGAGTTCAATGATATCGATAACAACCATATTGGGATCGACATCAATGGATTGAACTCTGTAAAGTCAGCAACAGCAGGATACTATGTTAAGGACGGAAGGTACCCAAGGAAATTGAGCCTCGTCAGTGGTAATCCAATGAAAGTTTGGGTCGAATATGATGGTACTCGGAAGCAGATTAATGTTACTTTGGCTCCAATTAGTGTTGAAGGAAGAAGTGCGCAGAACTACTTGAAGATTGGGAGCTGGAGTATGGGCCTCAAAGGTTTAAATACGAAGAATTGTATAAAGCCACTAAAGGGTTTGGAAAGGAACTGCTCTTGGGTGTTGGGGGATTTGGTGAGGTCTATAGAGGTATCTTACCCACCTCTAAGATTGAGATCGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

29.4

Weight (kDa)

7.74

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	20 - 212	1e-50	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
Acc16I	TGCGCA	1 cut(s)	642
Acc65I	GGTACC	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	522
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	4 cut(s)	33, 341, 524, 586
AfiI	CCNNNNNNNGG	4 cut(s)	118, 119, 311, 719
AgsI	TTSAA	7 cut(s)	145, 187, 355, 430, 475, 629, 655
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	5 cut(s)	13, 50, 63, 403, 666
AluI	AGCT	5 cut(s)	13, 50, 63, 403, 666
Alw21I	GWGCWC	2 cut(s)	405, 422
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	5 cut(s)	109, 277, 283, 346, 676
ApeKI	GCWGC	3 cut(s)	44, 47, 273
ApoI	RAATTY	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	600
Asp718I	GGTACC	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	3 cut(s)	110, 259, 676
AsuC2I	CCSGG	2 cut(s)	114, 321
AsuHPI	GGTGA	1 cut(s)	772
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	405, 422
BbvI	GCAGC	3 cut(s)	56, 59, 285
BccI	CCATC	3 cut(s)	101, 128, 575
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciVI	GTATCC	1 cut(s)	494
BcnI	CCSGG	2 cut(s)	114, 321
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 311
BfmI	CTRYAG	1 cut(s)	768
BfuI	GTATCC	1 cut(s)	494
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	4 cut(s)	45, 48, 274, 277
BlsI	GCNGC	4 cut(s)	46, 49, 275, 278
BmcAI	AGTACT	2 cut(s)	33, 341
Bme1390I	CCNGG	2 cut(s)	114, 321
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	3 cut(s)	110, 259, 676
BmiI	GGNNCC	4 cut(s)	112, 261, 524, 615
BmrFI	CCNGG	2 cut(s)	114, 321
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	2 cut(s)	108, 688
BpuMI	CCSGG	2 cut(s)	114, 321
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	2 cut(s)	461, 799
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	3 cut(s)	112, 280, 527
BsaXI	ACNNNNNCTCC	8 cut(s)	108, 114, 138, 144, 598, 628, 655, 685
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 119, 311, 719
Bse1I	ACTGG	2 cut(s)	176, 204
Bse8I	GATNNNNATC	2 cut(s)	461, 799
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	3 cut(s)	112, 280, 527
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	2 cut(s)	461, 799
BseLI	CCNNNNNNNGG	4 cut(s)	118, 119, 311, 719
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	176, 204
BseXI	GCAGC	3 cut(s)	56, 59, 285
BshFI	GGCC	5 cut(s)	111, 279, 285, 348, 678
BshNI	GGYRCC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	405, 422
BsiSI	CCGG	2 cut(s)	114, 321
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	118, 119, 311, 719
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	5 cut(s)	111, 279, 285, 348, 678
Bsp1286I	GDGCHC	2 cut(s)	405, 422
Bsp143I	GATC	4 cut(s)	55, 251, 456, 800
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	5 cut(s)	111, 279, 285, 348, 678
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	112, 261, 524, 615
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	176, 204
BssECI	CCNNGG	3 cut(s)	112, 280, 527
BssMI	GATC	4 cut(s)	55, 251, 456, 800
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	280, 527
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	59, 791
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	4 cut(s)	58, 254, 459, 803
BstMBI	GATC	4 cut(s)	55, 251, 456, 800
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	112, 319
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	3 cut(s)	56, 59, 285
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	5 cut(s)	111, 279, 285, 348, 678
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	200
BtsIMutI	CAGTG	1 cut(s)	553
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	3 cut(s)	110, 259, 676
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	4 cut(s)	32, 340, 523, 585
CviAII	CATG	3 cut(s)	127, 281, 386
CviQI	GTAC	4 cut(s)	32, 340, 523, 585
DdeI	CTNAG	2 cut(s)	59, 791
DpnI	GATC	4 cut(s)	57, 253, 458, 802
DpnII	GATC	4 cut(s)	55, 251, 456, 800
DraI	TTTAAA	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	280, 527
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	280, 527
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	2 cut(s)	280, 527
FaeI	CATG	3 cut(s)	130, 284, 389
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	3 cut(s)	126, 280, 385
Fnu4HI	GCNGC	4 cut(s)	45, 48, 274, 277
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	4 cut(s)	45, 48, 274, 277
FspBI	CTAG	2 cut(s)	35, 311
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	4 cut(s)	45, 48, 274, 277
GsuI	CTGGAG	2 cut(s)	108, 688
HaeIII	GGCC	5 cut(s)	111, 279, 285, 348, 678
HapII	CCGG	2 cut(s)	114, 321
HhaI	GCGC	1 cut(s)	643
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	3 cut(s)	130, 284, 389
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	83, 123, 194
HpaII	CCGG	2 cut(s)	114, 321
HphI	GGTGA	1 cut(s)	772
Hpy188I	TCNGA	4 cut(s)	211, 251, 256, 591
Hpy188III	TCNNGA	1 cut(s)	87
HpyAV	CCTTC	5 cut(s)	172, 193, 232, 513, 623
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	59, 791
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	130, 284, 389
HspAI	GCGC	1 cut(s)	641
KpnI	GGTACC	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	55, 251, 456, 800
LmnI	GCTCC	3 cut(s)	400, 619, 663
LpnPI	CCDG	7 cut(s)	72, 127, 189, 217, 334, 483, 652
Lsp1109I	GCAGC	3 cut(s)	56, 59, 285
MaeI	CTAG	2 cut(s)	35, 311
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	178, 604
MalI	GATC	4 cut(s)	57, 253, 458, 802
MboI	GATC	4 cut(s)	55, 251, 456, 800
MboII	GAAGA	7 cut(s)	65, 232, 320, 343, 645, 667, 709
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	405, 422
MluCI	AATT	5 cut(s)	21, 213, 533, 618, 700
MlyI	GAGTC	3 cut(s)	92, 132, 188
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	9 cut(s)	110, 250, 296, 359, 551, 689, 756, 766, 798
MseI	TTAA	4 cut(s)	414, 510, 600, 689
MspA1I	CMGCKG	2 cut(s)	50, 276
MspI	CCGG	2 cut(s)	114, 321
MspR9I	CCNGG	2 cut(s)	114, 321
MwoI	GCNNNNNNNGC	1 cut(s)	282
NciI	CCSGG	2 cut(s)	114, 321
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	4 cut(s)	55, 251, 456, 800
NlaIII	CATG	3 cut(s)	130, 284, 389
NlaIV	GGNNCC	4 cut(s)	112, 261, 524, 615
NmeAIII	GCCGAG	1 cut(s)	196
NsbI	TGCGCA	1 cut(s)	642
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	46, 49, 275, 278
PleI	GAGTC	3 cut(s)	91, 131, 188
PpsI	GAGTC	3 cut(s)	91, 131, 188
PpuMI	RGGWCCY	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	4 cut(s)	112, 261, 524, 615
PspPI	GGNCC	3 cut(s)	110, 259, 676
PspPPI	RGGWCCY	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	4 cut(s)	33, 341, 524, 586
RsaNI	GTAC	4 cut(s)	32, 340, 523, 585
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	4 cut(s)	414, 510, 600, 689
SatI	GCNGC	4 cut(s)	45, 48, 274, 277
Sau3AI	GATC	4 cut(s)	55, 251, 456, 800
Sau96I	GGNCC	3 cut(s)	110, 259, 676
ScaI	AGTACT	2 cut(s)	33, 341
SchI	GAGTC	3 cut(s)	92, 132, 188
ScrFI	CCNGG	2 cut(s)	114, 321
SduI	GDGCHC	2 cut(s)	405, 422
SfcI	CTRYAG	1 cut(s)	768
SinI	GGWCC	1 cut(s)	259
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	5 cut(s)	21, 213, 533, 618, 700
SsiI	CCGC	1 cut(s)	276
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	2 cut(s)	35, 311
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	112, 319
StyI	CCWWGG	2 cut(s)	280, 527
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	6 cut(s)	81, 362, 405, 438, 459, 573
TasI	AATT	5 cut(s)	21, 213, 533, 618, 700
TatI	WGTACW	2 cut(s)	31, 339
TauI	GCSGC	1 cut(s)	279
Tru1I	TTAA	4 cut(s)	414, 510, 600, 689
Tru9I	TTAA	4 cut(s)	414, 510, 600, 689
TscAI	CASTG	1 cut(s)	553
TseI	GCWGC	3 cut(s)	44, 47, 273
TspDTI	ATGAA	3 cut(s)	55, 392, 575
TspGWI	ACGGA	2 cut(s)	437, 531
TspRI	CASTG	1 cut(s)	553
VpaK11BI	GGWCC	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	564
XspI	CTAG	2 cut(s)	35, 311
ZraI	GACGTC	1 cut(s)	317
ZrmI	AGTACT	2 cut(s)	33, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.