Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000256

Physical Location & Seq

Genomic Coordinates Forward (+)

35561470 .. 35563538

Gene Structure 2069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAAAGTTTGGGTTGAATATGATGGTACCAAGAAGCAAATTGAAGTTACTATGGCTCCAATTGCAGTTGCAACTAAATCCCCAACTCCACTTTTGTCTTTGAAATATGACCTTTCTCCAATTCTCAACAAAACCATGTATGTTGGCTTTTCCTCTTCAACTGGTCCGTTCCTCACATCCCATTATGTAGTGGGTTGGAGCTTTAGGATGAATGGCCAAGCTCAAGACCTTATAGCTTCCAAACTTCCCAAGTTGCCTAGCATTGCAGGTGAAAAGAGGTCCATGCTTTTCAGCTTTGGTGTGCCTCGATTTCGGGAAAAGGAGCTTTTGGGAACTGGGGGATTTGGTAAAGTTTATAGAGGTTTATTACCCTCCTCTAAAATTGAGATTGCAGTGAAGAGGGTATCACATGAATCAAGACAGGGGATGAAGGAATTTGTTGCAGAAATTGTTAGTATTGGCCGGCTTCGTCACCGGAATTTAGTACAACTGTTGGGATATTGCAGGCGAAAAGGGGAGCTGCTTTTGGTCTATGACTACATGCCTAATGGAAGCTTGGACAAATACCTCTTTGATCAACCTAAGGTGACCCTTAATTGGAGCCAGAGGTTTAAAGTCATCAAAGGTGTGGCTTCAGGGCTGTTCTATCTTCATGAAGAGTGGGAACAGAGATGTGAAGGCCGTAATGTGCTGCTGGATGGGGAATTGAATGGAAGGCTGGGAGATTTCGGGCTTGCAAGATTATATGATCATGGAACAGACCCTCAAACTACTCATATAGTTGGAACATTCGGGTACCTAGCCCCAGAGCACATAAGAACAGGCCGGGCTACCACACGCACCGACGTGTTTGCTTTCGGGGCATTTTTGCTCGAAGTTGCTTGCGGAAAAAAGCCAATTGAGACACAGGGATCAGAAGATGTGATTTTGGTTGATTGGGTATTTTCTTGTTGGATTAGGAGTAACATCCTTGAGGCAAGAGATCAAAGATTTGGTACTGATTTTGTAGCCGAGGAAGTGGAGTTGGTGTTGAAGCTTGGGCTTTTGTGCTCTCATTCGAGCCAGAGGCAAGGCCAAGCATGCGACAAGTCATTCGGTACTTGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0010033 GO:0014070 GO:0016020 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044464 GO:0046677 GO:0048229 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

369

Amino Acids

41.58

Weight (kDa)

9.16

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	1 - 83	1.9e-22	Legume lectin domain
Pkinase	PF00069	104 - 306	2.7e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	107 - 308	3.5e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07460 AT1G07460
fragaria_vesca	FvH4_6g13200
malus_domestica	MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica	Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis	pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis	RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata	RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora	Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii	Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa	Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha	Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana	Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
Acc65I	GGTACC	2 cut(s)	26, 795
AccB1I	GGYRCC	2 cut(s)	26, 795
AciI	CCGC	2 cut(s)	885, 1105
AclWI	GGATC	1 cut(s)	919
AcoI	YGGCCR	2 cut(s)	214, 460
AcsI	RAATTY	2 cut(s)	434, 478
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	5 cut(s)	28, 486, 797, 997, 1099
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflIII	ACRYGT	1 cut(s)	846
AgsI	TTSAA	6 cut(s)	17, 44, 103, 159, 709, 1033
AjiI	CACGTC	1 cut(s)	847
AleI	CACNNNNGTG	1 cut(s)	845
AluBI	AGCT	8 cut(s)	201, 221, 236, 294, 325, 520, 555, 1036
AluI	AGCT	8 cut(s)	201, 221, 236, 294, 325, 520, 555, 1036
Alw21I	GWGCWC	2 cut(s)	813, 1052
Alw26I	GTCTC	1 cut(s)	896
AlwI	GGATC	1 cut(s)	919
AoxI	GGCC	5 cut(s)	214, 460, 679, 823, 1072
ApeKI	GCWGC	2 cut(s)	520, 691
ApoI	RAATTY	2 cut(s)	434, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	1076, 1108
Asp718I	GGTACC	2 cut(s)	26, 795
AspS9I	GGNCC	2 cut(s)	164, 279
AsuC2I	CCSGG	1 cut(s)	827
AsuHPI	GGTGA	3 cut(s)	281, 464, 598
AvaII	GGWCC	2 cut(s)	164, 279
AxyI	CCTNAGG	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	216
BanI	GGYRCC	2 cut(s)	26, 795
Bbv12I	GWGCWC	2 cut(s)	813, 1052
BbvI	GCAGC	2 cut(s)	507, 678
BccI	CCATC	2 cut(s)	17, 692
BceAI	ACGGC	1 cut(s)	666
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BclI	TGATCA	2 cut(s)	574, 748
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	2 cut(s)	258, 800
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	2 cut(s)	521, 692
BlsI	GCNGC	2 cut(s)	522, 693
Bme1390I	CCNGG	1 cut(s)	827
Bme18I	GGWCC	2 cut(s)	164, 279
BmgBI	CACGTC	1 cut(s)	847
BmgT120I	GGNCC	2 cut(s)	164, 279
BmiI	GGNNCC	4 cut(s)	28, 57, 602, 797
BmrFI	CCNGG	1 cut(s)	827
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	207, 992
BpuMI	CCSGG	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	1011
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 1013, 1043
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	166, 340
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	1011
BseGI	GGATG	5 cut(s)	176, 213, 432, 703, 966
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	166, 340
BseRI	GAGGAG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	507, 678
BseYI	CCCAGC	1 cut(s)	718
BshFI	GGCC	5 cut(s)	216, 462, 681, 825, 1074
BshNI	GGYRCC	2 cut(s)	26, 795
BsiHKAI	GWGCWC	2 cut(s)	813, 1052
BsiSI	CCGG	3 cut(s)	463, 475, 826
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	896
BsnI	GGCC	5 cut(s)	216, 462, 681, 825, 1074
Bsp1286I	GDGCHC	2 cut(s)	813, 1052
Bsp143I	GATC	4 cut(s)	574, 748, 911, 982
BspACI	CCGC	2 cut(s)	885, 1105
BspANI	GGCC	5 cut(s)	216, 462, 681, 825, 1074
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	4 cut(s)	28, 57, 602, 797
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	919
BspT107I	GGYRCC	2 cut(s)	26, 795
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	166, 340
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	1011
BssMI	GATC	4 cut(s)	574, 748, 911, 982
Bst4CI	ACNGT	1 cut(s)	492
Bst6I	CTCTTC	3 cut(s)	160, 392, 651
BstC8I	GCNNGC	5 cut(s)	464, 506, 735, 883, 1081
BstDEI	CTNAG	1 cut(s)	582
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	5 cut(s)	176, 213, 432, 703, 966
BstKTI	GATC	4 cut(s)	577, 751, 914, 985
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	4 cut(s)	574, 748, 911, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 860, 1080
BstNSI	RCATGY	2 cut(s)	544, 1083
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	825
BstV1I	GCAGC	2 cut(s)	507, 678
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	5 cut(s)	216, 462, 681, 825, 1074
BtrI	CACGTC	1 cut(s)	847
BtsCI	GGATG	5 cut(s)	176, 213, 432, 703, 966
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	257
Cac8I	GCNNGC	5 cut(s)	464, 506, 735, 883, 1081
CciI	TCATGA	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	2 cut(s)	164, 279
Csp6I	GTAC	5 cut(s)	27, 485, 796, 996, 1098
CviAII	CATG	7 cut(s)	136, 283, 410, 541, 653, 752, 1080
CviQI	GTAC	5 cut(s)	27, 485, 796, 996, 1098
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	4 cut(s)	576, 750, 913, 984
DpnII	GATC	4 cut(s)	574, 748, 911, 982
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	2 cut(s)	214, 460
Eam1104I	CTCTTC	3 cut(s)	160, 392, 651
EarI	CTCTTC	3 cut(s)	160, 392, 651
Eco47I	GGWCC	2 cut(s)	164, 279
Eco57I	CTGAAG	1 cut(s)	618
Eco81I	CCTNAGG	1 cut(s)	582
Eco91I	GGTNACC	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	586
FaeI	CATG	7 cut(s)	139, 286, 413, 544, 656, 755, 1083
FatI	CATG	7 cut(s)	135, 282, 409, 540, 652, 751, 1079
FbaI	TGATCA	2 cut(s)	574, 748
Fnu4HI	GCNGC	2 cut(s)	521, 692
FokI	GGATG	5 cut(s)	163, 220, 439, 710, 953
Fsp4HI	GCNGC	2 cut(s)	521, 692
FspBI	CTAG	2 cut(s)	258, 800
GluI	GCNGC	2 cut(s)	521, 692
GsaI	CCCAGC	1 cut(s)	722
HaeIII	GGCC	5 cut(s)	216, 462, 681, 825, 1074
HapII	CCGG	3 cut(s)	463, 475, 826
Hin1II	CATG	7 cut(s)	139, 286, 413, 544, 656, 755, 1083
HindIII	AAGCTT	2 cut(s)	553, 1034
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	3 cut(s)	463, 475, 826
HphI	GGTGA	3 cut(s)	281, 464, 598
Hpy188I	TCNGA	1 cut(s)	916
Hpy188III	TCNNGA	4 cut(s)	224, 314, 417, 653
Hpy99I	CGWCG	1 cut(s)	848
HpyAV	CCTTC	3 cut(s)	424, 671, 708
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	7 cut(s)	65, 71, 266, 392, 443, 504, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 860, 1080
HpyF3I	CTNAG	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	846
Hsp92II	CATG	7 cut(s)	139, 286, 413, 544, 656, 755, 1083
KpnI	GGTACC	2 cut(s)	30, 799
KroI	GCCGGC	1 cut(s)	462
KroNI	GCCGGC	1 cut(s)	464
Ksp22I	TGATCA	2 cut(s)	574, 748
Kzo9I	GATC	4 cut(s)	574, 748, 911, 982
LmnI	GCTCC	5 cut(s)	61, 198, 322, 517, 600
Lsp1109I	GCAGC	2 cut(s)	507, 678
MaeI	CTAG	2 cut(s)	258, 800
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	4 cut(s)	46, 470, 586, 962
MalI	GATC	4 cut(s)	576, 750, 913, 984
MboI	GATC	4 cut(s)	574, 748, 911, 982
MboII	GAAGA	5 cut(s)	147, 409, 641, 668, 929
MfeI	CAATTG	2 cut(s)	60, 897
MhlI	GDGCHC	2 cut(s)	813, 1052
MlsI	TGGCCA	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	216
MmeI	TCCRAC	3 cut(s)	176, 763, 932
Mox20I	TGGCCA	1 cut(s)	216
MroNI	GCCGGC	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	2 cut(s)	594, 612
MslI	CAYNNNNRTG	1 cut(s)	845
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	3 cut(s)	463, 475, 826
MspR9I	CCNGG	1 cut(s)	827
MunI	CAATTG	2 cut(s)	60, 897
MwoI	GCNNNNNNNGC	3 cut(s)	62, 860, 1080
NaeI	GCCGGC	1 cut(s)	464
NciI	CCSGG	1 cut(s)	827
NdeII	GATC	4 cut(s)	574, 748, 911, 982
NgoMIV	GCCGGC	1 cut(s)	462
NlaIII	CATG	7 cut(s)	139, 286, 413, 544, 656, 755, 1083
NlaIV	GGNNCC	4 cut(s)	28, 57, 602, 797
NmeAIII	GCCGAG	1 cut(s)	1036
NmuCI	GTSAC	2 cut(s)	470, 586
NspI	RCATGY	2 cut(s)	544, 1083
OliI	CACNNNNGTG	1 cut(s)	845
PaeI	GCATGC	1 cut(s)	1083
PagI	TCATGA	1 cut(s)	652
PaqCI	CACCTGC	1 cut(s)	257
PdiI	GCCGGC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	522, 693
PspEI	GGTNACC	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	718
PspN4I	GGNNCC	4 cut(s)	28, 57, 602, 797
PspPI	GGNCC	2 cut(s)	164, 279
RsaI	GTAC	5 cut(s)	28, 486, 797, 997, 1099
RsaNI	GTAC	5 cut(s)	27, 485, 796, 996, 1098
RseI	CAYNNNNRTG	1 cut(s)	845
SaqAI	TTAA	2 cut(s)	594, 612
SatI	GCNGC	2 cut(s)	521, 692
Sau3AI	GATC	4 cut(s)	574, 748, 911, 982
Sau96I	GGNCC	2 cut(s)	164, 279
ScrFI	CCNGG	1 cut(s)	827
SduI	GDGCHC	2 cut(s)	813, 1052
SinI	GGWCC	2 cut(s)	164, 279
SmiMI	CAYNNNNRTG	1 cut(s)	845
SmlI	CTYRAG	2 cut(s)	222, 971
SmoI	CTYRAG	2 cut(s)	222, 971
SphI	GCATGC	1 cut(s)	1083
SsiI	CCGC	2 cut(s)	885, 1105
SspMI	CTAG	2 cut(s)	258, 800
StyD4I	CCNGG	1 cut(s)	825
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	3 cut(s)	307, 873, 1058
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	2 cut(s)	594, 612
Tru9I	TTAA	2 cut(s)	594, 612
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	2 cut(s)	470, 586
TseI	GCWGC	2 cut(s)	520, 691
Tsp45I	GTSAC	2 cut(s)	470, 586
TspDTI	ATGAA	6 cut(s)	17, 224, 426, 443, 641, 669
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	164, 279
XapI	RAATTY	2 cut(s)	434, 478
XceI	RCATGY	2 cut(s)	544, 1083
XspI	CTAG	2 cut(s)	258, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.