Rroxscaffold_7G00206940

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
56792000 .. 56794151
2152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206940.1

Sequence Viewer

Length: 1047 bp
ATGACTCTGCTTTCTCCTTCTCCACCAACTTTATCTTTGCCATTGAACCGAGTTCACTACTTTCGTGGCCATGGAATGTCCTTTGTCATCGCTCCGACGAGAGGCCTCCCCGGAGCAATGTCGGGTCGTACGAGCCTGTTCAACGTCTCCAACAATGGGAATTTCACCAATCATGTTTTTGTGGAGATTGACACGATCGAGAACGCGGAATTCAATGACATCAATGATAACCATGTTGGTATAGACATCAATGGCTTGAACTCTATCACACTGCTCCACCTGGTAAAAAGAGGTCCATGCTTTTCACCTTTGGTGTGCCTCGATTTCCGTGAGTTTGGTTGTGTTAATGGTTTCGGGGTGCTTTATGTCATAAGTAGGAAGAGGAAGTTTGCAGAAGTGCTTGAAGATTGGGAGCTAGAGCGAAAAGGGGAGCTGCTTTTAATCTATGACTACATGCCTAATGGAAGCTTGGATAAATACCTCTTTGATCAACCCGAGGTGACCCTTAATTGGAGCCGGAGGTTTAAAGTCATCAAAGGTGTGGCTTCGGGGTTGTTCTATCTTCATGAAGAATGGGAACAAGTTGTGATTCATAGAGATGTGAAGGCCAGTAATGTGTTGCTAGATGGGGAATTGAATGGAAGGCTAGGAGATTTCGGGCTTGCAAGATTATACGACCATGGAACAAACCCTCAAACTACTCATGATATAGTTGGGACACTCGGAAGTAACATCCTAGAGGCAAGAGATCAAAGCCTTGGTACGGATTTTGTGGCCGAGGAAGTGGAGTTGGTGTTGAAACTTGGGCTTTTGTGCTATCATTCGGAGCCAGCGGCAAGGCCAAGCATGCAACAAGTCATTCAGTACTTGGCCGGTGATGTTGCTTTGCCGGAAGTGTCACTTTCCGGGTTTTCTTCTAATGGATTAATGATTGGACACCATGAAGGTTTTGATGACTATGTTATGTCGTATCAGTCTTCTTTAGGCAATAAGTCCTCCCATTCATCATATGTTCCAGAGTCGGCACTACTTTCAGGTGGTCGTTGA

Protein Analysis

348

Amino Acids

38.6

Weight (kDa)

5.34

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 22 - 90 1.1e-17 Legume lectin domain
Pkinase PF00069 140 - 241 4.9e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 141 - 227 2e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07460 AT1G07460
fragaria_vesca FvH4_6g13200
malus_domestica MD12G1146600.v1.1 MD12G1147100.v1.1 MD12G1147300.v1.1 MD12G1147500.v1.1
prunus_persica Prupe.6G259500_v2.0.a1 Prupe.6G259800_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G259900_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G260000_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261400_v2.0.a1 Prupe.6G261500_v2.0.a1
pyrus_communis pycom04g12150 pycom12g14040 pycom12g14060 pycom12g14080 pycom12g14110
rosa_chinensis RchiOBHm_Chr3g0460311 RchiOBHm_Chr3g0465181 RchiOBHm_Chr3g0465701 RchiOBHm_Chr3g0465801 RchiOBHm_Chr3g0465861 RchiOBHm_Chr3g0465911 RchiOBHm_Chr3g0465931 RchiOBHm_Chr3g0465991 RchiOBHm_Chr3g0466011 RchiOBHm_Chr4g0404151 RchiOBHm_Chr6g0253601 RchiOBHm_Chr6g0259671 RchiOBHm_Chr7g0189621 RchiOBHm_Chr7g0189631 RchiOBHm_Chr7g0216481
rosa_laevigata RLG00000014514 RLG00000014515 RLG00000014999 RLG00000024609 RLG00000024614 RLG00000024616 RLG00000024620 RLG00000024624 RLG00000024627 RLG00000024650 RLG00000025025
rosa_multiflora Rmu_co8340115.1_g000001 Rmu_sc0000362.1_g000006 Rmu_sc0000449.1_g000013 Rmu_sc0000536.1_g000003 Rmu_sc0000536.1_g000006 Rmu_sc0002405.1_g000009 Rmu_sc0003391.1_g000002 Rmu_sc0003391.1_g000003 Rmu_sc0003391.1_g000013 Rmu_sc0003492.1_g000011 Rmu_sc0004305.1_g000015 Rmu_sc0004305.1_g000025 Rmu_sc0007705.1_g000012 Rmu_sc0007705.1_g000014 Rmu_sc0007705.1_g000015 Rmu_sc0007705.1_g000018 Rmu_sc0009386.1_g000006 Rmu_sc0009386.1_g000008 Rmu_sc0010030.1_g000001 Rmu_sc0010217.1_g000002 Rmu_sc0034485.1_g000001 Rmu_ssc0000454.1_g000025
rosa_roxburghii Rroxscaffold_3G00243190 Rroxscaffold_6G00413130 Rroxscaffold_6G00414850 Rroxscaffold_6G00414890 Rroxscaffold_6G00414910 Rroxscaffold_6G00414930 Rroxscaffold_6G00419650 Rroxscaffold_7G00206940
rosa_rugosa Rorug03G0041500 Rorug03G0078300 Rorug03G0078500 Rorug03G0078600 Rorug03G0078800 Rorug03G0078900 Rorug07G0160500
rosa_samantha Rh3BG103300 Rh3BG139800 Rh3BG143800 Rh3BG144300 Rh3BG145000 Rh3BG145500 Rh3BG145600 Rh3BG146000 Rh3CG104900 Rh3CG141500 Rh3CG145100 Rh3CG145800 Rh3CG146300 Rh3CG146500 Rh3CG146700 Rh3CG147000 Rh3CG149900 Rh3DG104600 Rh3DG141000 Rh3DG145100 Rh3DG145600 Rh3DG146100 Rh3DG146400 Rh3DG146600 Rh3DG146900 Rh4AG123200 Rh4BG116400 Rh6AG060500 Rh6BG101000 Rh7AG299800 Rh7BG291300 Rh7DG106700 Rh7DG106900
rosa_wichuraiana Rw3G008440 Rw3G011450 Rw3G011670 Rw3G011710 Rw3G011720 Rw3G011750 Rw3G011770 Rw3G011810 Rw6G005390 Rw7G009000 Rw7G025480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AciI CCGC 2 cut(s) 206, 833
AcoI YGGCCR 3 cut(s) 67, 774, 870
AcsI RAATTY 2 cut(s) 160, 209
AfaI GTAC 3 cut(s) 130, 763, 866
AfiI CCNNNNNNNGG 4 cut(s) 101, 156, 510, 763
AgsI TTSAA 7 cut(s) 46, 142, 214, 259, 404, 637, 799
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 3 cut(s) 415, 433, 468
AluI AGCT 3 cut(s) 415, 433, 468
Alw26I GTCTC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 6 cut(s) 67, 103, 606, 774, 839, 870
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 2 cut(s) 160, 209
AseI ATTAAT 1 cut(s) 926
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 2 cut(s) 111, 907
AsuHPI GGTGA 4 cut(s) 157, 297, 511, 887
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 969
BbvI GCAGC 1 cut(s) 420
BccI CCATC 1 cut(s) 620
BciT130I CCWGG 1 cut(s) 281
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 2 cut(s) 111, 907
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 4 cut(s) 416, 623, 647, 737
BisI GCNGC 2 cut(s) 434, 834
BlsI GCNGC 2 cut(s) 435, 835
BmcAI AGTACT 1 cut(s) 866
Bme1390I CCNGG 3 cut(s) 111, 281, 907
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 515, 828
BmrFI CCNGG 3 cut(s) 111, 281, 907
BpiI GAAGAC 1 cut(s) 969
BpuMI CCSGG 2 cut(s) 111, 907
BsaJI CCNNGG 6 cut(s) 70, 109, 495, 679, 757, 777
BsaXI ACNNNNNCTCC 2 cut(s) 779, 809
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 156, 510, 763
Bse118I RCCGGY 1 cut(s) 872
Bse1I ACTGG 1 cut(s) 609
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 6 cut(s) 70, 109, 495, 679, 757, 777
BseGI GGATG 1 cut(s) 732
BseLI CCNNNNNNNGG 4 cut(s) 101, 156, 510, 763
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 609
BseXI GCAGC 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 6 cut(s) 69, 105, 608, 776, 841, 872
BsiEI CGRYCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 5 cut(s) 111, 517, 873, 890, 906
BsiWI CGTACG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 4 cut(s) 101, 156, 510, 763
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 730
BsnI GGCC 6 cut(s) 69, 105, 608, 776, 841, 872
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 3 cut(s) 195, 487, 748
Bsp19I CCATGG 2 cut(s) 70, 679
BspACI CCGC 2 cut(s) 206, 833
BspANI GGCC 6 cut(s) 69, 105, 608, 776, 841, 872
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 2 cut(s) 565, 703
BspLI GGNNCC 2 cut(s) 515, 828
BsrDI GCAATG 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 872
BsrI ACTGG 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 872
BssECI CCNNGG 6 cut(s) 70, 109, 495, 679, 757, 777
BssMI GATC 3 cut(s) 195, 487, 748
BssT1I CCWWGG 3 cut(s) 70, 679, 757
Bst2UI CCWGG 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 663, 831, 848
BstDSI CCRYGG 2 cut(s) 70, 679
BstEII GGTNACC 1 cut(s) 499
BstF5I GGATG 1 cut(s) 732
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 3 cut(s) 198, 490, 751
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 195, 487, 748
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 847
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 2 cut(s) 457, 850
BstPI GGTNACC 1 cut(s) 499
BstSCI CCNGG 3 cut(s) 109, 279, 905
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 1 cut(s) 969
BsuRI GGCC 6 cut(s) 69, 105, 608, 776, 841, 872
BtgI CCRYGG 2 cut(s) 70, 679
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 1 cut(s) 732
BtsI GCAGTG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 3 cut(s) 663, 831, 848
CciI TCATGA 2 cut(s) 565, 703
Cfr10I RCCGGY 1 cut(s) 872
Cfr13I GGNCC 1 cut(s) 293
CsiI ACCWGGT 1 cut(s) 279
Csp6I GTAC 3 cut(s) 129, 762, 865
CviQI GTAC 3 cut(s) 129, 762, 865
DpnI GATC 3 cut(s) 197, 489, 750
DpnII GATC 3 cut(s) 195, 487, 748
DraI TTTAAA 1 cut(s) 526
EaeI YGGCCR 3 cut(s) 67, 774, 870
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 3 cut(s) 70, 679, 757
Eco147I AGGCCT 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 494
Eco91I GGTNACC 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 499
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 3 cut(s) 70, 679, 757
ErhI CCWWGG 3 cut(s) 70, 679, 757
Esp3I CGTCTC 1 cut(s) 151
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 1 cut(s) 730
FauNDI CATATG 1 cut(s) 1009
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 434, 834
FokI GGATG 1 cut(s) 719
Fsp4HI GCNGC 2 cut(s) 434, 834
FspBI CTAG 4 cut(s) 416, 623, 647, 737
GluI GCNGC 2 cut(s) 434, 834
HaeIII GGCC 6 cut(s) 69, 105, 608, 776, 841, 872
HapII CCGG 5 cut(s) 111, 517, 873, 890, 906
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 3 cut(s) 4, 589, 1019
HpaII CCGG 5 cut(s) 111, 517, 873, 890, 906
HphI GGTGA 4 cut(s) 157, 297, 511, 887
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 96, 725, 826
Hpy188III TCNNGA 4 cut(s) 199, 566, 704, 1016
Hpy8I GTNNAC 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 27, 598, 636, 938
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 392, 665, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 847
HpySE526I ACGT 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 3 cut(s) 195, 487, 748
LmnI GCTCC 7 cut(s) 97, 113, 279, 412, 430, 513, 826
Lsp1109I GCAGC 1 cut(s) 420
MabI ACCWGGT 1 cut(s) 279
MaeI CTAG 4 cut(s) 416, 623, 647, 737
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 499, 728, 897
MalI GATC 3 cut(s) 197, 489, 750
MboI GATC 3 cut(s) 195, 487, 748
MboII GAAGA 6 cut(s) 391, 416, 554, 581, 906, 969
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 160, 209, 508, 632
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 1028
MmeI TCCRAC 2 cut(s) 119, 174
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 5 cut(s) 345, 440, 507, 525, 926
MslI CAYNNNNRTG 1 cut(s) 597
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 5 cut(s) 111, 517, 873, 890, 906
MspR9I CCNGG 3 cut(s) 111, 281, 907
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 847
NciI CCSGG 2 cut(s) 111, 907
NcoI CCATGG 2 cut(s) 70, 679
NdeI CATATG 1 cut(s) 1009
NdeII GATC 3 cut(s) 195, 487, 748
NlaIV GGNNCC 2 cut(s) 515, 828
NmeAIII GCCGAG 1 cut(s) 802
NmuCI GTSAC 2 cut(s) 499, 897
NspI RCATGY 2 cut(s) 457, 850
PaeI GCATGC 1 cut(s) 850
PagI TCATGA 2 cut(s) 565, 703
PceI AGGCCT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 1 cut(s) 589
Pfl23II CGTACG 1 cut(s) 128
PkrI GCNGC 2 cut(s) 435, 835
Ple19I CGATCG 1 cut(s) 198
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
PshBI ATTAAT 1 cut(s) 926
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 1 cut(s) 499
PspGI CCWGG 1 cut(s) 279
PspLI CGTACG 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 515, 828
PspPI GGNCC 1 cut(s) 293
PvuI CGATCG 1 cut(s) 198
RsaI GTAC 3 cut(s) 130, 763, 866
RsaNI GTAC 3 cut(s) 129, 762, 865
RseI CAYNNNNRTG 1 cut(s) 597
SaqAI TTAA 5 cut(s) 345, 440, 507, 525, 926
SatI GCNGC 2 cut(s) 434, 834
Sau3AI GATC 3 cut(s) 195, 487, 748
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 866
SchI GAGTC 1 cut(s) 1028
ScrFI CCNGG 3 cut(s) 111, 281, 907
SexAI ACCWGGT 1 cut(s) 279
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 597
SphI GCATGC 1 cut(s) 850
Sse9I AATT 4 cut(s) 160, 209, 508, 632
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 2 cut(s) 206, 833
SspMI CTAG 4 cut(s) 416, 623, 647, 737
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 109, 279, 905
StyI CCWWGG 3 cut(s) 70, 679, 757
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 198, 321
TasI AATT 4 cut(s) 160, 209, 508, 632
TatI WGTACW 1 cut(s) 864
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 5 cut(s) 345, 440, 507, 525, 926
Tru9I TTAA 5 cut(s) 345, 440, 507, 525, 926
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 499, 897
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 499, 897
TspDTI ATGAA 5 cut(s) 554, 581, 582, 957, 993
TspGWI ACGGA 2 cut(s) 317, 779
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 293
VspI ATTAAT 1 cut(s) 926
XapI RAATTY 2 cut(s) 160, 209
XceI RCATGY 2 cut(s) 457, 850
XspI CTAG 4 cut(s) 416, 623, 647, 737
ZrmI AGTACT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.