AT1G21080

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009290
Physical Location & Seq
Reverse (-)
7378538 .. 7382661
4124 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21080.2

Sequence Viewer

Length: 1176 bp
ATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTACGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATCCAGATAAAAACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCTACCAAGTGCTAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGATTTCAACTGAGATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTCTTTGAAGAATACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATCAGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACAAACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTACTAGCAATGCTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGTTGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGCTTGGGAAGAAAGCTATTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAATCCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAAGGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCCATAAGAAAGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAAAGCACTATCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCCACTGCCAAGAGAGAGGAGCTTCGTGCAAGGGCCAAGGGGTTAAAAACTCTGGGAAAGATCTTCCAGAAGAACAAGATAGCCAGTGAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGAAATGGTCAAGAACATGATCATTCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACCGTTGGACCTCAGGAACCGCAAAGCCCTTATGTGGAAGCACCGAAACTTGGAGAAGAGCAAATCAACTATTACTTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

391

Amino Acids

43.92

Weight (kDa)

5.88

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ-X PF14308 45 - 230 7.6e-54 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 841
AccB7I CCANNNNNTGG 1 cut(s) 151
AciI CCGC 6 cut(s) 48, 248, 436, 566, 1076, 1148
AclWI GGATC 6 cut(s) 116, 173, 236, 357, 857, 953
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 4 cut(s) 363, 504, 510, 747
AfaI GTAC 2 cut(s) 761, 855
AfiI CCNNNNNNNGG 4 cut(s) 151, 1090, 1106, 1154
AflII CTTAAG 1 cut(s) 428
AgsI TTSAA 5 cut(s) 228, 287, 535, 755, 860
AhdI GACNNNNNGTC 1 cut(s) 636
AjnI CCWGG 3 cut(s) 144, 181, 1153
Alw21I GWGCWC 1 cut(s) 1162
Alw26I GTCTC 2 cut(s) 5, 1159
AlwI GGATC 6 cut(s) 116, 173, 236, 357, 857, 953
AoxI GGCC 4 cut(s) 159, 195, 897, 1139
ApeKI GCWGC 5 cut(s) 131, 301, 512, 665, 694
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 3 cut(s) 433, 897, 1064
AsuHPI GGTGA 2 cut(s) 16, 1020
AvaII GGWCC 2 cut(s) 433, 1064
AxyI CCTNAGG 2 cut(s) 126, 1068
BbsI GAAGAC 2 cut(s) 414, 773
Bbv12I GWGCWC 1 cut(s) 1162
BbvI GCAGC 5 cut(s) 118, 313, 524, 652, 681
BciT130I CCWGG 3 cut(s) 146, 183, 1155
BclI TGATCA 1 cut(s) 1012
BcoDI GTCTC 2 cut(s) 5, 1159
BfaI CTAG 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 841
BglII AGATCT 1 cut(s) 924
BisI GCNGC 8 cut(s) 132, 249, 302, 513, 567, 666, 695, 1148
BlsI GCNGC 8 cut(s) 133, 250, 303, 514, 568, 667, 696, 1149
Bme1390I CCNGG 3 cut(s) 146, 183, 1155
Bme18I GGWCC 2 cut(s) 433, 1064
BmeRI GACNNNNNGTC 1 cut(s) 636
BmgT120I GGNCC 3 cut(s) 433, 897, 1064
BmiI GGNNCC 1 cut(s) 1074
BmrFI CCNGG 3 cut(s) 146, 183, 1155
BmsI GCATC 3 cut(s) 109, 323, 1055
BpiI GAAGAC 2 cut(s) 414, 773
BpmI CTGGAG 1 cut(s) 1137
BsaJI CCNNGG 4 cut(s) 31, 182, 900, 1136
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 1090, 1106, 1154
Bse1I ACTGG 1 cut(s) 948
Bse21I CCTNAGG 2 cut(s) 126, 1068
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 3 cut(s) 146, 183, 1155
BseDI CCNNGG 4 cut(s) 31, 182, 900, 1136
BseGI GGATG 2 cut(s) 100, 1019
BseLI CCNNNNNNNGG 4 cut(s) 151, 1090, 1106, 1154
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 5 cut(s) 51, 140, 222, 434, 1082
BseNI ACTGG 1 cut(s) 948
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 5 cut(s) 118, 313, 524, 652, 681
BshFI GGCC 4 cut(s) 161, 197, 899, 1141
BsiHKAI GWGCWC 1 cut(s) 1162
BslI CCNNNNNNNGG 4 cut(s) 151, 1090, 1106, 1154
BsmAI GTCTC 2 cut(s) 5, 1159
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 4 cut(s) 161, 197, 899, 1141
Bsp1286I GDGCHC 1 cut(s) 1162
Bsp143I GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
BspACI CCGC 6 cut(s) 48, 248, 436, 566, 1076, 1148
BspANI GGCC 4 cut(s) 161, 197, 899, 1141
BspCNI CTCAG 5 cut(s) 52, 139, 223, 433, 1081
BspLI GGNNCC 1 cut(s) 1074
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 6 cut(s) 116, 173, 236, 357, 857, 953
BspQI GCTCTTC 1 cut(s) 1107
BspTI CTTAAG 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 1 cut(s) 948
BssECI CCNNGG 4 cut(s) 31, 182, 900, 1136
BssMI GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
BssT1I CCWWGG 2 cut(s) 900, 1136
Bst2UI CCWGG 3 cut(s) 146, 183, 1155
Bst4CI ACNGT 1 cut(s) 1060
Bst6I CTCTTC 2 cut(s) 750, 1107
BstAFI CTTAAG 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 674
BstC8I GCNNGC 3 cut(s) 91, 306, 1143
BstDEI CTNAG 7 cut(s) 60, 126, 173, 231, 420, 719, 1068
BstF5I GGATG 2 cut(s) 100, 1019
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 9 cut(s) 124, 181, 237, 244, 352, 865, 927, 961, 1015
BstMAI GTCTC 2 cut(s) 5, 1159
BstMBI GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 56, 257, 320, 674, 1147
BstNI CCWGG 3 cut(s) 146, 183, 1155
BstSCI CCNGG 3 cut(s) 144, 181, 1153
BstV1I GCAGC 5 cut(s) 118, 313, 524, 652, 681
BstV2I GAAGAC 2 cut(s) 414, 773
BstX2I RGATCY 2 cut(s) 862, 924
BstYI RGATCY 2 cut(s) 862, 924
Bsu36I CCTNAGG 2 cut(s) 126, 1068
BsuRI GGCC 4 cut(s) 161, 197, 899, 1141
BtsCI GGATG 2 cut(s) 100, 1019
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 3 cut(s) 339, 867, 955
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 3 cut(s) 91, 306, 1143
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 3 cut(s) 433, 897, 1064
Csp6I GTAC 2 cut(s) 760, 854
CviAII CATG 2 cut(s) 763, 1010
CviQI GTAC 2 cut(s) 760, 854
DdeI CTNAG 7 cut(s) 60, 126, 173, 231, 420, 719, 1068
DpnI GATC 9 cut(s) 123, 180, 236, 243, 351, 864, 926, 960, 1014
DpnII GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
DriI GACNNNNNGTC 1 cut(s) 636
Eam1104I CTCTTC 2 cut(s) 750, 1107
Eam1105I GACNNNNNGTC 1 cut(s) 636
EarI CTCTTC 2 cut(s) 750, 1107
Eco130I CCWWGG 2 cut(s) 900, 1136
Eco147I AGGCCT 3 cut(s) 161, 197, 1141
Eco32I GATATC 2 cut(s) 334, 820
Eco47I GGWCC 2 cut(s) 433, 1064
Eco57I CTGAAG 4 cut(s) 363, 504, 510, 747
Eco81I CCTNAGG 2 cut(s) 126, 1068
EcoRII CCWGG 3 cut(s) 144, 181, 1153
EcoRV GATATC 2 cut(s) 334, 820
EcoT14I CCWWGG 2 cut(s) 900, 1136
ErhI CCWWGG 2 cut(s) 900, 1136
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 2 cut(s) 766, 1013
FalI AAGNNNNNCTT 2 cut(s) 399, 431
FatI CATG 2 cut(s) 762, 1009
FbaI TGATCA 1 cut(s) 1012
Fnu4HI GCNGC 8 cut(s) 132, 249, 302, 513, 567, 666, 695, 1148
FokI GGATG 2 cut(s) 87, 1006
Fsp4HI GCNGC 8 cut(s) 132, 249, 302, 513, 567, 666, 695, 1148
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 8 cut(s) 132, 249, 302, 513, 567, 666, 695, 1148
GsuI CTGGAG 1 cut(s) 1137
HaeIII GGCC 4 cut(s) 161, 197, 899, 1141
HhaI GCGC 1 cut(s) 1147
Hin1II CATG 2 cut(s) 766, 1013
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 3 cut(s) 424, 501, 791
HphI GGTGA 2 cut(s) 16, 1020
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 6 cut(s) 354, 396, 423, 545, 560, 1039
Hpy188III TCNNGA 5 cut(s) 104, 860, 931, 1004, 1070
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 338, 722, 739
HpyCH4III ACNGT 1 cut(s) 1060
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 6 cut(s) 100, 512, 668, 677, 697, 893
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 257, 320, 674, 1147
HpyF3I CTNAG 7 cut(s) 60, 126, 173, 231, 420, 719, 1068
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 2 cut(s) 766, 1013
HspAI GCGC 1 cut(s) 1145
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 2 cut(s) 883, 1157
Lsp1109I GCAGC 5 cut(s) 118, 313, 524, 652, 681
LweI GCATC 3 cut(s) 109, 323, 1055
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 3 cut(s) 493, 638, 658
MalI GATC 9 cut(s) 123, 180, 236, 243, 351, 864, 926, 960, 1014
MboI GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
MboII GAAGA 9 cut(s) 299, 328, 419, 595, 767, 778, 919, 946, 1124
MflI RGATCY 2 cut(s) 862, 924
MhlI GDGCHC 1 cut(s) 1162
MluCI AATT 3 cut(s) 139, 467, 733
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 1042
MseI TTAA 4 cut(s) 66, 429, 908, 1174
MspA1I CMGCKG 2 cut(s) 665, 694
MspCI CTTAAG 1 cut(s) 428
MspR9I CCNGG 3 cut(s) 146, 183, 1155
MvaI CCWGG 3 cut(s) 146, 183, 1155
MwoI GCNNNNNNNGC 5 cut(s) 56, 257, 320, 674, 1147
NdeII GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
NlaIII CATG 2 cut(s) 766, 1013
NlaIV GGNNCC 1 cut(s) 1074
NmeAIII GCCGAG 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 638
PceI AGGCCT 3 cut(s) 161, 197, 1141
PciSI GCTCTTC 1 cut(s) 1107
PfeI GAWTC 2 cut(s) 424, 791
PflMI CCANNNNNTGG 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 1153
PkrI GCNGC 8 cut(s) 133, 250, 303, 514, 568, 667, 696, 1149
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 144, 181, 1153
PspGI CCWGG 3 cut(s) 144, 181, 1153
PspN4I GGNNCC 1 cut(s) 1074
PspPI GGNCC 3 cut(s) 433, 897, 1064
PsuI RGATCY 2 cut(s) 862, 924
PvuII CAGCTG 2 cut(s) 665, 694
RsaI GTAC 2 cut(s) 761, 855
RsaNI GTAC 2 cut(s) 760, 854
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 4 cut(s) 66, 429, 908, 1174
SatI GCNGC 8 cut(s) 132, 249, 302, 513, 567, 666, 695, 1148
Sau3AI GATC 9 cut(s) 121, 178, 234, 241, 349, 862, 924, 958, 1012
Sau96I GGNCC 3 cut(s) 433, 897, 1064
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 3 cut(s) 146, 183, 1155
SduI GDGCHC 1 cut(s) 1162
SfaNI GCATC 3 cut(s) 109, 323, 1055
SinI GGWCC 2 cut(s) 433, 1064
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 3 cut(s) 139, 467, 733
SseBI AGGCCT 3 cut(s) 161, 197, 1141
SsiI CCGC 6 cut(s) 48, 248, 436, 566, 1076, 1148
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 3 cut(s) 161, 197, 1141
StyD4I CCNGG 3 cut(s) 144, 181, 1153
StyI CCWWGG 2 cut(s) 900, 1136
TaaI ACNGT 1 cut(s) 1060
TaiI ACGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 822
TasI AATT 3 cut(s) 139, 467, 733
TatI WGTACW 1 cut(s) 759
TauI GCSGC 3 cut(s) 251, 569, 1150
TfiI GAWTC 2 cut(s) 424, 791
Tru1I TTAA 4 cut(s) 66, 429, 908, 1174
Tru9I TTAA 4 cut(s) 66, 429, 908, 1174
TscAI CASTG 3 cut(s) 346, 874, 955
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 5 cut(s) 131, 301, 512, 665, 694
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 6 cut(s) 480, 634, 722, 779, 1008, 1056
TspGWI ACGGA 3 cut(s) 29, 68, 1008
TspRI CASTG 3 cut(s) 346, 874, 955
Van91I CCANNNNNTGG 1 cut(s) 151
Vha464I CTTAAG 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 433, 1064
XapI RAATTY 1 cut(s) 467
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.