RchiOBHm_Chr7g0217951

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009290
Physical Location & Seq
Reverse (-)
35851953 .. 35856831
4879 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19508

Sequence Viewer

Length: 1182 bp
ATGGTGAAGGAGACGGAATATTACGACGTCCTCGGAGTAAATCCCACCGCCACCGAAGCCGAGATCAAGAAAGCTTATTACATTAAGGCAAGACAGGTTCATCCAGATAAAAACCCGAACGATCCTCTCGCGGCGCAAAATTTTCAGGCAAGGCTAGTTTTGGGAGAAGCCTACCAAGTGTTAAGTGACCCTGCTCAACGACAAGCCTATGATGCTCATGGAAAATCGGGAATCTCAACCGATGGAATTATTGATCCTGCAGCAATCTTCGCTATGCTATTTGGTAGTGAGCTTTTTGAGGAATATATTGGACAGCTAGCCATGGCATCAATGGCTTCACTAGATATTTTTACAGAAGGAGAACAGTTCGATGCCAAAAAGTTGCAAGAGAAAATGCGGGTGGTTCAAAAAGAGAGAGAAGAAAAGCTTGCAGAACTACTAAAAAATAGACTCAACCAATATGTACAAGGAAACAAAGAGGACTTTGTTTGTCATGCTGAAGCTGAAGTTGCAAGACTTTCCAATGCAGCTTATGGTGTTGATATGTTGAATACAATCGGCTATATATATGCCAGACAGTCAGCGAAAGAGCTAGGAAAGAAAGCAATTTATCTGGGAGTGCCATTTATTGCTGAGTGGTTTAGAAATAAAGGGCACTTCATTAAATCCCAAGTAACAGCAGCAACAGGTGCGATTGCTTTGATCCAACTGCAAGAAGACATGAAAAAGCAACTAAATGCAGAAGGAAATTACACTGAGGAAGAGCTTGAAGAATACATGCAAAATAACAAGAAGTTGATGATTGATTCCCTGTGGAAGCTCAATGTGGCTGATATTGAGGCCACTCTCTCCCGCGTTTGTCAGATGGTTCTTCAAGACAGCAGTGCCAAGAAAGAGGAACTCCGTGCACGAGCAAAGGGGTTAAAAACTCTTGGCAAAATCTTCCAGAGAACCAAGTCTACCAATGAAGTTGAGGGTGAAGGTGCACCAAATAGTCTTAATGGAATTGAATCAAGCCGCGATGCTTCTCCTTCGACAACACCAAGGTCCTCAATAAGCTCTTATGCACCACAGGTGCCACAGAGCCCCTACGTGGAACTTGCAGGTGTGCAGTTTGACAACTTTCCTAGGCCAACGGCACCACCTGGTGCACAGAGACATTCTTCCATGGGCAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

393

Amino Acids

43.73

Weight (kDa)

5.64

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 71 7.6e-23 DnaJ domain
DnaJ-X PF14308 136 - 327 2.3e-56 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1094
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 1094
AccB1I GGYRCC 2 cut(s) 1075, 1138
AccI GTMKAC 1 cut(s) 959
AccII CGCG 3 cut(s) 131, 855, 1020
AciI CCGC 5 cut(s) 48, 131, 397, 853, 1018
AclWI GGATC 3 cut(s) 116, 248, 697
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 2 cut(s) 519, 525
AcyI GRCGYC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 1148
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 1093, 1173
AgsI TTSAA 5 cut(s) 407, 550, 770, 875, 1010
AjnI CCWGG 1 cut(s) 1144
Alw21I GWGCWC 3 cut(s) 910, 988, 1153
Alw26I GTCTC 2 cut(s) 5, 1150
Alw44I GTGCAC 3 cut(s) 906, 984, 1149
AlwI GGATC 3 cut(s) 116, 248, 697
AoxI GGCC 2 cut(s) 840, 1130
ApaLI GTGCAC 3 cut(s) 906, 984, 1149
ApeKI GCWGC 3 cut(s) 260, 527, 680
ApoI RAATTY 1 cut(s) 139
AspA2I CCTAGG 1 cut(s) 1127
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 1047
AsuHPI GGTGA 2 cut(s) 16, 989
AsuNHI GCTAGC 1 cut(s) 316
AvaII GGWCC 1 cut(s) 1047
AvrII CCTAGG 1 cut(s) 1127
BaeGI GKGCMC 4 cut(s) 657, 910, 988, 1153
BanI GGYRCC 2 cut(s) 1075, 1138
BanII GRGCYC 1 cut(s) 1088
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 3 cut(s) 910, 988, 1153
BbvI GCAGC 3 cut(s) 272, 539, 692
BccI CCATC 2 cut(s) 236, 859
BceAI ACGGC 1 cut(s) 1152
BciT130I CCWGG 1 cut(s) 1146
BcoDI GTCTC 2 cut(s) 5, 1150
BfaI CTAG 5 cut(s) 155, 317, 341, 593, 1128
BfmI CTRYAG 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 1094
BisI GCNGC 5 cut(s) 132, 261, 528, 681, 1018
BlnI CCTAGG 1 cut(s) 1127
BlsI GCNGC 5 cut(s) 133, 262, 529, 682, 1019
Bme1390I CCNGG 1 cut(s) 1146
Bme18I GGWCC 1 cut(s) 1047
BmgT120I GGNCC 1 cut(s) 1047
BmiI GGNNCC 2 cut(s) 1077, 1140
BmrFI CCNGG 1 cut(s) 1146
BmsI GCATC 4 cut(s) 202, 335, 361, 1012
BmtI GCTAGC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 723
BsaAI YACGTR 1 cut(s) 1093
BsaHI GRCGYC 1 cut(s) 27
BsaJI CCNNGG 5 cut(s) 31, 321, 1043, 1127, 1167
Bsc4I CCNNNNNNNGG 2 cut(s) 1093, 1173
BseBI CCWGG 1 cut(s) 1146
BseDI CCNNGG 5 cut(s) 31, 321, 1043, 1127, 1167
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 2 cut(s) 1093, 1173
BseMII CTCAG 2 cut(s) 624, 747
BseSI GKGCMC 4 cut(s) 657, 910, 988, 1153
BseXI GCAGC 3 cut(s) 272, 539, 692
BsgI GTGCAG 1 cut(s) 1130
Bsh1236I CGCG 3 cut(s) 131, 855, 1020
BshFI GGCC 2 cut(s) 842, 1132
BshNI GGYRCC 2 cut(s) 1075, 1138
BsiHKAI GWGCWC 3 cut(s) 910, 988, 1153
BslI CCNNNNNNNGG 2 cut(s) 1093, 1173
BsmAI GTCTC 2 cut(s) 5, 1150
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 2 cut(s) 842, 1132
Bsp1286I GDGCHC 5 cut(s) 657, 910, 988, 1088, 1153
Bsp1407I TGTACA 1 cut(s) 463
Bsp143I GATC 4 cut(s) 63, 121, 253, 702
Bsp19I CCATGG 2 cut(s) 321, 1167
BspACI CCGC 5 cut(s) 48, 131, 397, 853, 1018
BspANI GGCC 2 cut(s) 842, 1132
BspCNI CTCAG 2 cut(s) 625, 748
BspFNI CGCG 3 cut(s) 131, 855, 1020
BspLI GGNNCC 2 cut(s) 1077, 1140
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 1094
BspOI GCTAGC 1 cut(s) 320
BspPI GGATC 3 cut(s) 116, 248, 697
BspQI GCTCTTC 1 cut(s) 756
BspT107I GGYRCC 2 cut(s) 1075, 1138
BsrGI TGTACA 1 cut(s) 463
BssECI CCNNGG 5 cut(s) 31, 321, 1043, 1127, 1167
BssMI GATC 4 cut(s) 63, 121, 253, 702
BssNI GRCGYC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 909
BssT1I CCWWGG 4 cut(s) 321, 1043, 1127, 1167
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 1146
Bst4CI ACNGT 2 cut(s) 366, 579
Bst6I CTCTTC 1 cut(s) 756
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 689
BstAUI TGTACA 1 cut(s) 463
BstBAI YACGTR 1 cut(s) 1093
BstC8I GCNNGC 2 cut(s) 318, 429
BstDEI CTNAG 2 cut(s) 633, 756
BstDSI CCRYGG 2 cut(s) 321, 1167
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 3 cut(s) 131, 855, 1020
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 4 cut(s) 66, 124, 256, 705
BstMAI GTCTC 2 cut(s) 5, 1150
BstMBI GATC 4 cut(s) 63, 121, 253, 702
BstMWI GCNNNNNNNGC 6 cut(s) 56, 212, 269, 332, 509, 689
BstNI CCWGG 1 cut(s) 1146
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 1144
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 4 cut(s) 657, 910, 988, 1153
BstUI CGCG 3 cut(s) 131, 855, 1020
BstV1I GCAGC 3 cut(s) 272, 539, 692
BstV2I GAAGAC 1 cut(s) 723
BsuRI GGCC 2 cut(s) 842, 1132
BtgI CCRYGG 2 cut(s) 321, 1167
BtgZI GCGATG 1 cut(s) 1035
BtsCI GGATG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 889
BtsIMutI CAGTG 2 cut(s) 753, 889
BveI ACCTGC 1 cut(s) 1094
Cac8I GCNNGC 2 cut(s) 318, 429
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 1047
CsiI ACCWGGT 1 cut(s) 1144
Csp6I GTAC 1 cut(s) 464
CviAII CATG 6 cut(s) 218, 322, 494, 721, 778, 1168
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 2 cut(s) 633, 756
DpnI GATC 4 cut(s) 65, 123, 255, 704
DpnII GATC 4 cut(s) 63, 121, 253, 702
DraIII CACNNNGTG 1 cut(s) 1148
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco130I CCWWGG 4 cut(s) 321, 1043, 1127, 1167
Eco24I GRGCYC 1 cut(s) 1088
Eco47I GGWCC 1 cut(s) 1047
Eco57I CTGAAG 2 cut(s) 519, 525
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRII CCWGG 1 cut(s) 1144
EcoT14I CCWWGG 4 cut(s) 321, 1043, 1127, 1167
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 4 cut(s) 321, 1043, 1127, 1167
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 6 cut(s) 221, 325, 497, 724, 781, 1171
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 6 cut(s) 217, 321, 493, 720, 777, 1167
FauI CCCGC 2 cut(s) 390, 860
FblI GTMKAC 1 cut(s) 959
Fnu4HI GCNGC 5 cut(s) 132, 261, 528, 681, 1018
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 5 cut(s) 132, 261, 528, 681, 1018
FspBI CTAG 5 cut(s) 155, 317, 341, 593, 1128
GlaI GCGC 1 cut(s) 135
GluI GCNGC 5 cut(s) 132, 261, 528, 681, 1018
HaeIII GGCC 2 cut(s) 842, 1132
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 221, 325, 497, 724, 781, 1171
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 2 cut(s) 72, 425
HinfI GANTC 4 cut(s) 231, 450, 806, 1010
HphI GGTGA 2 cut(s) 16, 989
Hpy166II GTNNAC 4 cut(s) 908, 960, 986, 1151
Hpy188I TCNGA 2 cut(s) 35, 864
Hpy188III TCNNGA 5 cut(s) 67, 104, 228, 875, 946
Hpy8I GTNNAC 4 cut(s) 908, 960, 986, 1151
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 4 cut(s) 350, 737, 974, 1041
HpyCH4III ACNGT 2 cut(s) 366, 579
HpyCH4IV ACGT 2 cut(s) 27, 1092
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 212, 269, 332, 509, 689
HpyF3I CTNAG 2 cut(s) 633, 756
HpySE526I ACGT 2 cut(s) 27, 1092
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 221, 325, 497, 724, 781, 1171
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 63, 121, 253, 702
LguI GCTCTTC 1 cut(s) 756
Lsp1109I GCAGC 3 cut(s) 272, 539, 692
LweI GCATC 4 cut(s) 202, 335, 361, 1012
MabI ACCWGGT 1 cut(s) 1144
MaeI CTAG 5 cut(s) 155, 317, 341, 593, 1128
MaeII ACGT 2 cut(s) 27, 1092
MaeIII GTNAC 2 cut(s) 185, 673
MalI GATC 4 cut(s) 65, 123, 255, 704
MboI GATC 4 cut(s) 63, 121, 253, 702
MboII GAAGA 8 cut(s) 259, 431, 728, 773, 782, 863, 934, 1155
MhlI GDGCHC 5 cut(s) 657, 910, 988, 1088, 1153
MluCI AATT 5 cut(s) 139, 246, 606, 748, 1005
MlyI GAGTC 1 cut(s) 444
MmeI TCCRAC 1 cut(s) 730
MnlI CCTC 9 cut(s) 41, 135, 292, 472, 751, 832, 889, 967, 1060
MseI TTAA 6 cut(s) 84, 182, 663, 923, 999, 1180
MspR9I CCNGG 1 cut(s) 1146
MvaI CCWGG 1 cut(s) 1146
MvnI CGCG 3 cut(s) 131, 855, 1020
MwoI GCNNNNNNNGC 6 cut(s) 56, 212, 269, 332, 509, 689
NcoI CCATGG 2 cut(s) 321, 1167
NdeII GATC 4 cut(s) 63, 121, 253, 702
NheI GCTAGC 1 cut(s) 316
NlaIII CATG 6 cut(s) 221, 325, 497, 724, 781, 1171
NlaIV GGNNCC 2 cut(s) 1077, 1140
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 781
PaqCI CACCTGC 1 cut(s) 1094
PciSI GCTCTTC 1 cut(s) 756
PfeI GAWTC 3 cut(s) 231, 806, 1010
PkrI GCNGC 5 cut(s) 133, 262, 529, 682, 1019
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Ppu21I YACGTR 1 cut(s) 1093
PpuMI RGGWCCY 1 cut(s) 1047
Psp5II RGGWCCY 1 cut(s) 1047
Psp6I CCWGG 1 cut(s) 1144
PspGI CCWGG 1 cut(s) 1144
PspN4I GGNNCC 2 cut(s) 1077, 1140
PspPI GGNCC 1 cut(s) 1047
PspPPI RGGWCCY 1 cut(s) 1047
PsrI GAACNNNNNNTAC 2 cut(s) 943, 975
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 6 cut(s) 84, 182, 663, 923, 999, 1180
SatI GCNGC 5 cut(s) 132, 261, 528, 681, 1018
Sau3AI GATC 4 cut(s) 63, 121, 253, 702
Sau96I GGNCC 1 cut(s) 1047
SchI GAGTC 1 cut(s) 444
ScrFI CCNGG 1 cut(s) 1146
SduI GDGCHC 5 cut(s) 657, 910, 988, 1088, 1153
SexAI ACCWGGT 1 cut(s) 1144
SfaNI GCATC 4 cut(s) 202, 335, 361, 1012
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 1047
Sse9I AATT 5 cut(s) 139, 246, 606, 748, 1005
SsiI CCGC 5 cut(s) 48, 131, 397, 853, 1018
SspI AATATT 1 cut(s) 20
SspMI CTAG 5 cut(s) 155, 317, 341, 593, 1128
StyD4I CCNGG 1 cut(s) 1144
StyI CCWWGG 4 cut(s) 321, 1043, 1127, 1167
TaaI ACNGT 2 cut(s) 366, 579
TaiI ACGT 2 cut(s) 30, 1095
TaqI TCGA 2 cut(s) 369, 1034
TasI AATT 5 cut(s) 139, 246, 606, 748, 1005
TatI WGTACW 1 cut(s) 463
TauI GCSGC 2 cut(s) 134, 1020
TfiI GAWTC 3 cut(s) 231, 806, 1010
Tru1I TTAA 6 cut(s) 84, 182, 663, 923, 999, 1180
Tru9I TTAA 6 cut(s) 84, 182, 663, 923, 999, 1180
TscAI CASTG 2 cut(s) 760, 889
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 3 cut(s) 260, 527, 680
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 89, 649, 737, 981
TspGWI ACGGA 2 cut(s) 29, 893
TspRI CASTG 2 cut(s) 760, 889
VneI GTGCAC 3 cut(s) 906, 984, 1149
VpaK11BI GGWCC 1 cut(s) 1047
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmaJI CCTAGG 1 cut(s) 1127
XmiI GTMKAC 1 cut(s) 959
XspI CTAG 5 cut(s) 155, 317, 341, 593, 1128
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.