MD12G1067400.v1.1

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0009290
Physical Location & Seq
Forward (+)
7971204 .. 7976454
5251 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1067400.v1.1.491

Sequence Viewer

Length: 1209 bp
ATGGTGAAGGAAACGGAGTACTACGACGTTCTCGGCGTCAGCCCGGCGGCGACCGAGGCGGAGATCAAGAAAGCTTATTACATGAAGGCAAGGCAGGTTCATCCAGATAAAAACCCAAATGATCCACTTGCAGCACAAAATTTTCAGGTTTTGGGAGAAGCTTACCAAGTGTTAAGCGACCCAAGCCAACGCCAAGCGTATGATGCTTATGGAAAATCAGGAATTTCAACCGACGCAATTATTGATCCTGCAGCGATATTTGCCATGCTTTTTGGTAGTGAGCTCTTTGAGGAATATATTGGACAGCTAGCCATGGCATCAATGGCTTCCTTAGATATTTTCACAGAAGGGGAACAGTTTGATGCGAAAAAGTTGCAAGACAAAATGCGGGTTGTTCAGAAGGAAAGAGAAGAAAAGCTTGCAGAAACACTAAAAAATCGACTCAACCAATATGTGCAAGGCAACAAAGAGGAATTTGTTAGTCATGCTGAAGCTGAAGTTGCGAGGCTTTCCAATGCAGCTTATGGTGTTGATATGTTGAATACAATTGGCTACATATATGCCAGACAATCAGCAAAGGAGCTAGGCAAGAAAGCAATGTATTTGGGCGTGCCATTTGTTGCAGAGTGGTTTAGAAATAAAGGGCATTTCATTAAATCTCAAGTAACAGCAGCAACAGGTGCAATTGCTTTGATCCAGCTGCAGGAAGACATGAAAAAGCAGCTAAGTGCTGAAGGAAATTACACAGAGGAAGAGCTCGAAGAATACATGCAATCTCACAAGAAAGTGATGATTGATTCCCTGTGGAAGCTTAATGTGGCTGATATTGAGGCCACTCTTTCTCGTGTTTGTCAGATGGTTCTTCAAGACAACAATGCCAAGAAAGAGGAACTCCGTGCACGAGCAAAGGGGTTGAAAACTCTTGGCAAAATCTTCCAGAGAACTAAGTCAACCGGTGGGAATGAGGGTGAAACTCCACAAAATAGTAGAGTTCATAAACTGAATGGAAGTGAATTACGCTATGATCCCTCTTCTCCTATAACAACACCAAAGTCCTCAAAGCCTGAAGAGCCATCATATGCTGCATTCGAGCCGCAGAGCCCCTATGTGGAAGCCCCCCAAATTGCAGGAGCGCAGTTGGACTATCACTTCCCAAGGCCAACTGCACCACCTGGTGCCCAGAGACATTCTTCCATTGGCAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

403

Amino Acids

44.9

Weight (kDa)

5.81

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 68 2.1e-25 DnaJ domain
DnaJ-X PF14308 133 - 324 1.3e-56 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 85
AccB1I GGYRCC 1 cut(s) 1175
AciI CCGC 4 cut(s) 47, 59, 388, 1094
AclWI GGATC 4 cut(s) 116, 239, 688, 1019
AcsI RAATTY 3 cut(s) 139, 222, 473
AcuI CTGAAG 4 cut(s) 510, 516, 753, 1086
AcyI GRCGYC 1 cut(s) 36
AdeI CACNNNGTG 1 cut(s) 1175
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 3 cut(s) 703, 1108, 1200
AgeI ACCGGT 1 cut(s) 953
AgsI TTSAA 4 cut(s) 228, 541, 866, 916
AjnI CCWGG 1 cut(s) 1171
Alw21I GWGCWC 3 cut(s) 285, 759, 901
Alw26I GTCTC 1 cut(s) 1177
Alw44I GTGCAC 1 cut(s) 897
AlwI GGATC 4 cut(s) 116, 239, 688, 1019
AoxI GGCC 2 cut(s) 831, 1157
ApaLI GTGCAC 1 cut(s) 897
ApeKI GCWGC 7 cut(s) 131, 251, 518, 671, 700, 721, 1082
ApoI RAATTY 3 cut(s) 139, 222, 473
AsiGI ACCGGT 1 cut(s) 953
AspLEI GCGC 1 cut(s) 1135
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 16, 980
AsuNHI GCTAGC 1 cut(s) 307
BaeGI GKGCMC 2 cut(s) 901, 1180
BanI GGYRCC 1 cut(s) 1175
BanII GRGCYC 3 cut(s) 285, 759, 1103
BauI CACGAG 2 cut(s) 843, 900
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 3 cut(s) 285, 759, 901
BbvI GCAGC 7 cut(s) 143, 263, 530, 683, 687, 733, 1069
BccI CCATC 2 cut(s) 850, 1081
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 1 cut(s) 1173
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 1177
BfaI CTAG 2 cut(s) 308, 584
BfmI CTRYAG 2 cut(s) 249, 701
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 9 cut(s) 48, 132, 252, 519, 672, 701, 722, 1083, 1094
BlsI GCNGC 9 cut(s) 49, 133, 253, 520, 673, 702, 723, 1084, 1095
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 44, 1173
BmiI GGNNCC 1 cut(s) 1177
BmrFI CCNGG 2 cut(s) 44, 1173
BmsI GCATC 3 cut(s) 193, 326, 352
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 3 cut(s) 54, 312, 1154
BsaWI WCCGGW 1 cut(s) 953
Bsc4I CCNNNNNNNGG 3 cut(s) 703, 1108, 1200
Bse118I RCCGGY 1 cut(s) 953
Bse3DI GCAATG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 1173
BseDI CCNNGG 3 cut(s) 54, 312, 1154
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 703, 1108, 1200
BseMI GCAATG 1 cut(s) 603
BseSI GKGCMC 2 cut(s) 901, 1180
BseXI GCAGC 7 cut(s) 143, 263, 530, 683, 687, 733, 1069
BsgI GTGCAG 1 cut(s) 1149
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 833, 1159
BshNI GGYRCC 1 cut(s) 1175
BshTI ACCGGT 1 cut(s) 953
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 3 cut(s) 285, 759, 901
BsiSI CCGG 2 cut(s) 44, 954
BslI CCNNNNNNNGG 3 cut(s) 703, 1108, 1200
BsmAI GTCTC 1 cut(s) 1177
BsmI GAATGC 1 cut(s) 1085
BsnI GGCC 2 cut(s) 833, 1159
Bsp1286I GDGCHC 5 cut(s) 285, 759, 901, 1103, 1180
Bsp143I GATC 5 cut(s) 63, 121, 244, 693, 1024
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 4 cut(s) 47, 59, 388, 1094
BspANI GGCC 2 cut(s) 833, 1159
BspLI GGNNCC 1 cut(s) 1177
BspMAI CTGCAG 2 cut(s) 253, 705
BspMI ACCTGC 1 cut(s) 85
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 4 cut(s) 116, 239, 688, 1019
BspQI GCTCTTC 2 cut(s) 747, 1062
BspT107I GGYRCC 1 cut(s) 1175
BsrDI GCAATG 1 cut(s) 603
BsrFI RCCGGY 1 cut(s) 953
BssAI RCCGGY 1 cut(s) 953
BssECI CCNNGG 3 cut(s) 54, 312, 1154
BssMI GATC 5 cut(s) 63, 121, 244, 693, 1024
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 2 cut(s) 843, 900
BssT1I CCWWGG 2 cut(s) 312, 1154
Bst2BI CACGAG 2 cut(s) 843, 900
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 3 cut(s) 747, 1036, 1062
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 3 cut(s) 309, 420, 611
BstDEI CTNAG 3 cut(s) 331, 725, 945
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 1135
BstKTI GATC 5 cut(s) 66, 124, 247, 696, 1027
BstMAI GTCTC 1 cut(s) 1177
BstMBI GATC 5 cut(s) 63, 121, 244, 693, 1024
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 8 cut(s) 56, 183, 203, 260, 323, 500, 680, 1069
BstNI CCWGG 1 cut(s) 1173
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 2 cut(s) 42, 1171
BstSFI CTRYAG 2 cut(s) 249, 701
BstSLI GKGCMC 2 cut(s) 901, 1180
BstV1I GCAGC 7 cut(s) 143, 263, 530, 683, 687, 733, 1069
BstV2I GAAGAC 1 cut(s) 714
BsuRI GGCC 2 cut(s) 833, 1159
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 309, 420, 611
CfoI GCGC 1 cut(s) 1135
Cfr10I RCCGGY 1 cut(s) 953
CseI GACGC 2 cut(s) 25, 242
CsiI ACCWGGT 1 cut(s) 1171
Csp6I GTAC 1 cut(s) 19
CspAI ACCGGT 1 cut(s) 953
CviAII CATG 6 cut(s) 82, 265, 313, 485, 712, 769
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 331, 725, 945
DpnI GATC 5 cut(s) 65, 123, 246, 695, 1026
DpnII GATC 5 cut(s) 63, 121, 244, 693, 1024
DraIII CACNNNGTG 1 cut(s) 1175
Eam1104I CTCTTC 3 cut(s) 747, 1036, 1062
EarI CTCTTC 3 cut(s) 747, 1036, 1062
EciI GGCGGA 1 cut(s) 74
Ecl136II GAGCTC 2 cut(s) 283, 757
Eco130I CCWWGG 2 cut(s) 312, 1154
Eco24I GRGCYC 3 cut(s) 285, 759, 1103
Eco53kI GAGCTC 2 cut(s) 283, 757
Eco57I CTGAAG 4 cut(s) 510, 516, 753, 1086
EcoICRI GAGCTC 2 cut(s) 283, 757
EcoRII CCWGG 1 cut(s) 1171
EcoT14I CCWWGG 2 cut(s) 312, 1154
EcoT38I GRGCYC 3 cut(s) 285, 759, 1103
ErhI CCWWGG 2 cut(s) 312, 1154
FaeI CATG 6 cut(s) 85, 268, 316, 488, 715, 772
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 6 cut(s) 81, 264, 312, 484, 711, 768
FauI CCCGC 1 cut(s) 381
FauNDI CATATG 1 cut(s) 1078
Fnu4HI GCNGC 9 cut(s) 48, 132, 252, 519, 672, 701, 722, 1083, 1094
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 3 cut(s) 285, 759, 1103
Fsp4HI GCNGC 9 cut(s) 48, 132, 252, 519, 672, 701, 722, 1083, 1094
FspBI CTAG 2 cut(s) 308, 584
GlaI GCGC 1 cut(s) 1134
GluI GCNGC 9 cut(s) 48, 132, 252, 519, 672, 701, 722, 1083, 1094
HaeIII GGCC 2 cut(s) 833, 1159
HapII CCGG 2 cut(s) 44, 954
HgaI GACGC 2 cut(s) 25, 242
HhaI GCGC 1 cut(s) 1135
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 6 cut(s) 85, 268, 316, 488, 715, 772
Hin6I GCGC 1 cut(s) 1133
HinP1I GCGC 1 cut(s) 1133
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HindIII AAGCTT 4 cut(s) 72, 159, 416, 809
HinfI GANTC 2 cut(s) 441, 797
HpaII CCGG 2 cut(s) 44, 954
HphI GGTGA 2 cut(s) 16, 980
Hpy166II GTNNAC 2 cut(s) 899, 951
Hpy188I TCNGA 2 cut(s) 399, 855
Hpy188III TCNNGA 5 cut(s) 67, 104, 219, 866, 937
Hpy8I GTNNAC 2 cut(s) 899, 951
Hpy99I CGWCG 2 cut(s) 29, 236
HpyAV CCTTC 4 cut(s) 79, 341, 394, 728
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 183, 203, 260, 323, 500, 680, 1069
HpyF3I CTNAG 3 cut(s) 331, 725, 945
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 6 cut(s) 85, 268, 316, 488, 715, 772
HspAI GCGC 1 cut(s) 1133
Kzo9I GATC 5 cut(s) 63, 121, 244, 693, 1024
LguI GCTCTTC 2 cut(s) 747, 1062
LmnI GCTCC 2 cut(s) 580, 1130
Lsp1109I GCAGC 7 cut(s) 143, 263, 530, 683, 687, 733, 1069
LweI GCATC 3 cut(s) 193, 326, 352
MabI ACCWGGT 1 cut(s) 1171
MaeI CTAG 2 cut(s) 308, 584
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 664
MalI GATC 5 cut(s) 65, 123, 246, 695, 1026
MboI GATC 5 cut(s) 63, 121, 244, 693, 1024
MboII GAAGA 9 cut(s) 422, 719, 764, 773, 854, 925, 1023, 1079, 1182
MfeI CAATTG 2 cut(s) 546, 684
MhlI GDGCHC 5 cut(s) 285, 759, 901, 1103, 1180
MluCI AATT 9 cut(s) 139, 222, 237, 473, 546, 684, 739, 1013, 1122
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 1119
MseI TTAA 4 cut(s) 173, 654, 813, 1207
MspA1I CMGCKG 1 cut(s) 700
MspI CCGG 2 cut(s) 44, 954
MspR9I CCNGG 2 cut(s) 44, 1173
MunI CAATTG 2 cut(s) 546, 684
Mva1269I GAATGC 1 cut(s) 1085
MvaI CCWGG 1 cut(s) 1173
MwoI GCNNNNNNNGC 8 cut(s) 56, 183, 203, 260, 323, 500, 680, 1069
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 312
NdeI CATATG 1 cut(s) 1078
NdeII GATC 5 cut(s) 63, 121, 244, 693, 1024
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 6 cut(s) 85, 268, 316, 488, 715, 772
NlaIV GGNNCC 1 cut(s) 1177
NmeAIII GCCGAG 1 cut(s) 12
NspI RCATGY 1 cut(s) 772
PciSI GCTCTTC 2 cut(s) 747, 1062
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 1085
PfeI GAWTC 1 cut(s) 797
PinAI ACCGGT 1 cut(s) 953
PkrI GCNGC 9 cut(s) 49, 133, 253, 520, 673, 702, 723, 1084, 1095
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Psp124BI GAGCTC 2 cut(s) 285, 759
Psp6I CCWGG 1 cut(s) 1171
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 1 cut(s) 1177
PstI CTGCAG 2 cut(s) 253, 705
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
SacI GAGCTC 2 cut(s) 285, 759
SapI GCTCTTC 2 cut(s) 747, 1062
SaqAI TTAA 4 cut(s) 173, 654, 813, 1207
SatI GCNGC 9 cut(s) 48, 132, 252, 519, 672, 701, 722, 1083, 1094
Sau3AI GATC 5 cut(s) 63, 121, 244, 693, 1024
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 2 cut(s) 44, 1173
SduI GDGCHC 5 cut(s) 285, 759, 901, 1103, 1180
SexAI ACCWGGT 1 cut(s) 1171
SfaNI GCATC 3 cut(s) 193, 326, 352
SfcI CTRYAG 2 cut(s) 249, 701
SmlI CTYRAG 1 cut(s) 660
SmoI CTYRAG 1 cut(s) 660
Sse9I AATT 9 cut(s) 139, 222, 237, 473, 546, 684, 739, 1013, 1122
SsiI CCGC 4 cut(s) 47, 59, 388, 1094
SspMI CTAG 2 cut(s) 308, 584
SstI GAGCTC 2 cut(s) 285, 759
StyD4I CCNGG 2 cut(s) 42, 1171
StyI CCWWGG 2 cut(s) 312, 1154
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 439, 759, 1089
TaqII GACCGA 1 cut(s) 68
TasI AATT 9 cut(s) 139, 222, 237, 473, 546, 684, 739, 1013, 1122
TatI WGTACW 1 cut(s) 18
TauI GCSGC 2 cut(s) 50, 1096
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 4 cut(s) 173, 654, 813, 1207
Tru9I TTAA 4 cut(s) 173, 654, 813, 1207
TseI GCWGC 7 cut(s) 131, 251, 518, 671, 700, 721, 1082
TspDTI ATGAA 5 cut(s) 89, 98, 640, 728, 983
TspGWI ACGGA 2 cut(s) 29, 884
VneI GTGCAC 1 cut(s) 897
XapI RAATTY 3 cut(s) 139, 222, 473
XceI RCATGY 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 2 cut(s) 308, 584
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.