Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009290

Physical Location & Seq

Genomic Coordinates Reverse (-)

35327401 .. 35332586

Gene Structure 5186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG314500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTAAAGGAGACGGAATATTACGACGTCCTCGGAGTAAATCCCACCGCCACCGAAGCCGAGATCAAGAAAGCTTATTACATTAAGGCAAGACAGGTTCATCCAGATAAAAACCCGAACGATCCTCTCGCGGCGCAAAATTTTCAGGTTTTGGGAGAAGCCTACCAAGTGTTAAGTGACCCTGCTCAACGACAAGCCTATGATGCTCATGGAAAATCCGGAATCTCAACCGATGGAATTATTGATCCTGCAGCAATCTTCGCTATGCTATTTGGTAGTGAGCTTTTTGAGGAATATATTGGACAGCTAGCCATGGCATCAATGGCTTCACTAGATATTTTTACAGAAGGAGAACAGTTCGATGCCAAAAAGTTGCAAGAGAAAATGCGGGTGGTTCAAAAAGAGAGAGAAGAAAAGCTTGCAGAACTACTAAAAAATAGACTCAACCAATATGTACAAGGAAACAAAGAGGACTTTGTTTGTCATGCTGAAGCTGAAGTCGCAAGACTTTCCAATGCAGCTTATGGTGTTGATATGTTGAATACAATCGGCTATATATATGCCAGACAGTCAGCGAAAGAGCTAGGAAAGAAAGCAATATATCTGGGAGTGCCATTTATTGCTGAGTGGTTTAGAAATAAAGGGCACTTCATTAAATCCCAAGTAACAGCAGCAACAGGTGCGATTGCTTTGATCCAACTGCAAGAAGACATGAAAAAGCAACTAAATGCAGAAGGAAATTACACTGAGGAAGAGCTTGAAGAATACATGCAAAATAACAAGAAGTTGATGATTGATTCCCTGTGGAAGCTCAATGTGGCTGATATTGAGGCCACTCTCTCCCGCGTTTGTCAGATGGTTCTTCAAGACAGCAGTGCCAAGAAAGAGGAACTCCGTGCACGAGCAAAGGGGTTAAAAACTCTTGGCAAAATCTTCCAGAGAACCAAGTCTACCAATGAAGTTGAGGGTGAAGGTGCACCAAATAGTCTTAATGGAATTGAATCAAGCCGCGATGCTTCTCCTTCGACAACACCAAGGTCCTCAATAAGCTCTTATGCACCACAGGTACCTTCTCTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

360

Amino Acids

40.11

Weight (kDa)

5.43

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 68	1.8e-25	DnaJ domain
DnaJ-X	PF14308	133 - 324	1.9e-56	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21080 AT1G21080 AT1G21080 AT1G76700
fragaria_vesca	FvH4_5g26910
malus_domestica	MD12G1067400.v1.1 MD14G1067500.v1.1
prunus_persica	Prupe.7G066900_v2.0.a1 Prupe.7G066900_v2.0.a1 Prupe.7G066900_v2.0.a1
pyrus_communis	pycom14g05580
rosa_chinensis	RchiOBHm_Chr7g0217951
rosa_laevigata	RLG00000002430
rosa_multiflora	Rmu_sc0012998.1_g000002
rosa_roxburghii	Rroxscaffold_3G00241610
rosa_rugosa	Rorug07G0172300 Rorug07G0172300 Rorug07G0172400
rosa_samantha	Rh7AG314500 Rh7DG312700
rosa_wichuraiana	Rw0G017290 Rw7G026590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	1066
AccB1I	GGYRCC	1 cut(s)	1066
AccI	GTMKAC	1 cut(s)	950
AccII	CGCG	3 cut(s)	131, 846, 1011
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	5 cut(s)	48, 131, 388, 844, 1009
AclWI	GGATC	3 cut(s)	116, 239, 688
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	510, 516
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	2 cut(s)	456, 1068
AgsI	TTSAA	5 cut(s)	398, 541, 761, 866, 1001
Alw21I	GWGCWC	2 cut(s)	901, 979
Alw26I	GTCTC	1 cut(s)	5
Alw44I	GTGCAC	2 cut(s)	897, 975
AlwI	GGATC	3 cut(s)	116, 239, 688
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	1 cut(s)	831
ApaLI	GTGCAC	2 cut(s)	897, 975
ApeKI	GCWGC	3 cut(s)	251, 518, 671
ApoI	RAATTY	1 cut(s)	139
Asp718I	GGTACC	1 cut(s)	1066
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	1038
AsuHPI	GGTGA	1 cut(s)	980
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	1038
BaeGI	GKGCMC	3 cut(s)	648, 901, 979
BanI	GGYRCC	1 cut(s)	1066
BauI	CACGAG	1 cut(s)	900
BbsI	GAAGAC	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	901, 979
BbvI	GCAGC	3 cut(s)	263, 530, 683
BccI	CCATC	2 cut(s)	227, 850
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	3 cut(s)	308, 332, 584
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
BlsI	GCNGC	5 cut(s)	133, 253, 520, 673, 1010
Bme18I	GGWCC	1 cut(s)	1038
BmgT120I	GGNCC	1 cut(s)	1038
BmiI	GGNNCC	1 cut(s)	1068
BmsI	GCATC	4 cut(s)	193, 326, 352, 1003
BmtI	GCTAGC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	31, 312, 1034
BsaWI	WCCGGW	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	31, 312, 1034
BseGI	GGATG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	615, 738
BseSI	GKGCMC	3 cut(s)	648, 901, 979
BseXI	GCAGC	3 cut(s)	263, 530, 683
Bsh1236I	CGCG	3 cut(s)	131, 846, 1011
BshFI	GGCC	1 cut(s)	833
BshNI	GGYRCC	1 cut(s)	1066
BsiHKAI	GWGCWC	2 cut(s)	901, 979
BsiSI	CCGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	833
Bsp1286I	GDGCHC	3 cut(s)	648, 901, 979
Bsp13I	TCCGGA	1 cut(s)	218
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	63, 121, 244, 693
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	5 cut(s)	48, 131, 388, 844, 1009
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	2 cut(s)	616, 739
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	3 cut(s)	131, 846, 1011
BspLI	GGNNCC	1 cut(s)	1068
BspMAI	CTGCAG	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	116, 239, 688
BspQI	GCTCTTC	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	1066
BsrGI	TGTACA	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	31, 312, 1034
BssMI	GATC	4 cut(s)	63, 121, 244, 693
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	2 cut(s)	312, 1034
Bst2BI	CACGAG	1 cut(s)	900
Bst4CI	ACNGT	2 cut(s)	357, 570
Bst6I	CTCTTC	1 cut(s)	747
BstACI	GRCGYC	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	309, 420
BstDEI	CTNAG	2 cut(s)	624, 747
BstDSI	CCRYGG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	3 cut(s)	131, 846, 1011
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	66, 124, 247, 696
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	4 cut(s)	63, 121, 244, 693
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 203, 260, 323, 500, 680
BstNSI	RCATGY	1 cut(s)	772
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	3 cut(s)	648, 901, 979
BstUI	CGCG	3 cut(s)	131, 846, 1011
BstV1I	GCAGC	3 cut(s)	263, 530, 683
BstV2I	GAAGAC	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	833
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	2 cut(s)	744, 880
Cac8I	GCNNGC	2 cut(s)	309, 420
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	1038
Csp6I	GTAC	2 cut(s)	455, 1067
CviAII	CATG	5 cut(s)	209, 313, 485, 712, 769
CviQI	GTAC	2 cut(s)	455, 1067
DdeI	CTNAG	2 cut(s)	624, 747
DpnI	GATC	4 cut(s)	65, 123, 246, 695
DpnII	GATC	4 cut(s)	63, 121, 244, 693
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
Eco130I	CCWWGG	2 cut(s)	312, 1034
Eco47I	GGWCC	1 cut(s)	1038
Eco57I	CTGAAG	2 cut(s)	510, 516
EcoO109I	RGGNCCY	1 cut(s)	1038
EcoT14I	CCWWGG	2 cut(s)	312, 1034
ErhI	CCWWGG	2 cut(s)	312, 1034
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	5 cut(s)	212, 316, 488, 715, 772
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	5 cut(s)	208, 312, 484, 711, 768
FauI	CCCGC	2 cut(s)	381, 851
FblI	GTMKAC	1 cut(s)	950
Fnu4HI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
FspBI	CTAG	3 cut(s)	308, 332, 584
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	212, 316, 488, 715, 772
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HindIII	AAGCTT	2 cut(s)	72, 416
HinfI	GANTC	4 cut(s)	222, 441, 797, 1001
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	3 cut(s)	899, 951, 977
Hpy188I	TCNGA	2 cut(s)	35, 855
Hpy188III	TCNNGA	5 cut(s)	67, 104, 219, 866, 937
Hpy8I	GTNNAC	3 cut(s)	899, 951, 977
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	5 cut(s)	341, 728, 965, 1032, 1080
HpyCH4III	ACNGT	2 cut(s)	357, 570
HpyCH4IV	ACGT	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 203, 260, 323, 500, 680
HpyF3I	CTNAG	2 cut(s)	624, 747
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	5 cut(s)	212, 316, 488, 715, 772
HspAI	GCGC	1 cut(s)	134
Kpn2I	TCCGGA	1 cut(s)	218
KpnI	GGTACC	1 cut(s)	1070
Kzo9I	GATC	4 cut(s)	63, 121, 244, 693
LguI	GCTCTTC	1 cut(s)	747
Lsp1109I	GCAGC	3 cut(s)	263, 530, 683
LweI	GCATC	4 cut(s)	193, 326, 352, 1003
MaeI	CTAG	3 cut(s)	308, 332, 584
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	2 cut(s)	176, 664
MalI	GATC	4 cut(s)	65, 123, 246, 695
MboI	GATC	4 cut(s)	63, 121, 244, 693
MboII	GAAGA	7 cut(s)	250, 422, 719, 764, 773, 854, 925
MhlI	GDGCHC	3 cut(s)	648, 901, 979
MluCI	AATT	4 cut(s)	139, 237, 739, 996
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	721
MnlI	CCTC	9 cut(s)	41, 135, 283, 463, 742, 823, 880, 958, 1051
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	5 cut(s)	84, 173, 654, 914, 990
MspI	CCGG	1 cut(s)	219
MvnI	CGCG	3 cut(s)	131, 846, 1011
MwoI	GCNNNNNNNGC	6 cut(s)	56, 203, 260, 323, 500, 680
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	4 cut(s)	63, 121, 244, 693
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	5 cut(s)	212, 316, 488, 715, 772
NlaIV	GGNNCC	1 cut(s)	1068
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	772
PciSI	GCTCTTC	1 cut(s)	747
PfeI	GAWTC	3 cut(s)	222, 797, 1001
PkrI	GCNGC	5 cut(s)	133, 253, 520, 673, 1010
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	1038
Psp5II	RGGWCCY	1 cut(s)	1038
PspN4I	GGNNCC	1 cut(s)	1068
PspPI	GGNCC	1 cut(s)	1038
PspPPI	RGGWCCY	1 cut(s)	1038
PsrI	GAACNNNNNNTAC	2 cut(s)	934, 966
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	456, 1068
RsaNI	GTAC	2 cut(s)	455, 1067
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	5 cut(s)	84, 173, 654, 914, 990
SatI	GCNGC	5 cut(s)	132, 252, 519, 672, 1009
Sau3AI	GATC	4 cut(s)	63, 121, 244, 693
Sau96I	GGNCC	1 cut(s)	1038
SchI	GAGTC	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	648, 901, 979
SfaNI	GCATC	4 cut(s)	193, 326, 352, 1003
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	1038
Sse9I	AATT	4 cut(s)	139, 237, 739, 996
SsiI	CCGC	5 cut(s)	48, 131, 388, 844, 1009
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	3 cut(s)	308, 332, 584
StyI	CCWWGG	2 cut(s)	312, 1034
TaaI	ACNGT	2 cut(s)	357, 570
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	360, 1025
TasI	AATT	4 cut(s)	139, 237, 739, 996
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	2 cut(s)	134, 1011
TfiI	GAWTC	3 cut(s)	222, 797, 1001
Tru1I	TTAA	5 cut(s)	84, 173, 654, 914, 990
Tru9I	TTAA	5 cut(s)	84, 173, 654, 914, 990
TscAI	CASTG	2 cut(s)	751, 880
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	251, 518, 671
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	89, 640, 728, 972
TspGWI	ACGGA	2 cut(s)	29, 884
TspRI	CASTG	2 cut(s)	751, 880
VneI	GTGCAC	2 cut(s)	897, 975
VpaK11BI	GGWCC	1 cut(s)	1038
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	950
XspI	CTAG	3 cut(s)	308, 332, 584
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.