FvH4_5g26910

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009290
Physical Location & Seq
Reverse (-)
18251656 .. 18256467
4812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26910.t2

Sequence Viewer

Length: 1158 bp
ATGGTGAAGGAGACGGAATATTACGACGTCCTCGGAGTAAAGCCCACCGCCACCGAAGCCGAGATCAAGAAAGCTTATTACATTAAGGCAAGGCAGGTTCATCCAGATAAAAACCCGAACGATCCTCTTGCAGCGCAAAATTTTCAGGTTTTGGGAGAAGCCTACCAAGTGTTAAGTGACCCTGCTCAACGACAAGCTTATGATGCTCATGGAAAATCAGGAATCTCAACCGATGGAATTATTGATCCTGCAGCAATTTTCGCTATGCTATTTGGTAGTGAGCTTTTTGAGGAATATATTGGACAGCTAGCCATGGCATCAATGGCTTCGCTAGATATTTTTACAGAAGGAGAACAGTTTGACGCCAAAAAGTTGCAAGAGAAAATGCGGGTTGTTCAAAGAGAGAGAGAAGAAAAGCTTGTAGAACAACTAAAAAATAGACTCAACCAATATGTGCAAGGAAACAAAGAGGGATTTATTCGTGATGCTGAAGCTGAAGTTGCACGACTTTCGAATGCAGCTTATGGTGTTGATATGTTGAATACAATTGGCTACATATATGCCAGACAGTCGGCAAAAGAGCTAGGGAAGAAAGCGATATATCTGGGAGTGCCATTTATTGCTGAGTGGTTTAGGAATAAAGGGCACTTCATCAAATCCCAAGTAACAGCGGCAACAGGTGCGATTGCTTTGATCCAACTGCAGGAAGACATGAAAAAGCAACTAAATGCAGAAGGAAATTACACTGAGGAAGAGCTTGAAGAATACATGCAATCTAACAAGAAATTGATGATTGATTCCCTGTGGAAACTCAATGTGGCTGATATTGAGGCCACTCTCTCCCGCGTTTGTCAGATGGTTCTTCAAGACAGCAATGCCAAGAAAGAGGAACTCCGTGCACGAGCAAAGGGGTTAAAAACTCTTGGCAAAATCTTCCAGAGAACCAAGTCAACCAATGGGGTTGATGGTGAAAATCCATCAAATGGTCAAATTGAATCGAGCCGCGATGCTTCTCCTTCAACAACACCAAGGTCCTCAATAAGCCAATATGCACCACAGGTGCCACAGATCCCCTATGTGGAACTTGCAGGTGTGCAGTTTGACAACTTCCCTAGGCCAACTGCACCACCTGGTGCACAGAGACATTCTTCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

386

Amino Acids

42.97

Weight (kDa)

5.81

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ-X PF14308 137 - 326 3.7e-55 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1079
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 2 cut(s) 85, 1079
AccB1I GGYRCC 1 cut(s) 1060
AccB7I CCANNNNNTGG 1 cut(s) 983
AccII CGCG 2 cut(s) 846, 1005
AciI CCGC 5 cut(s) 48, 388, 671, 844, 1003
AclWI GGATC 4 cut(s) 116, 239, 688, 1063
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 2 cut(s) 510, 516
AcyI GRCGYC 2 cut(s) 27, 363
AdeI CACNNNGTG 1 cut(s) 1133
AfiI CCNNNNNNNGG 3 cut(s) 703, 983, 1078
AgsI TTSAA 6 cut(s) 398, 541, 761, 866, 995, 1020
AjnI CCWGG 1 cut(s) 1129
AluBI AGCT 9 cut(s) 74, 197, 283, 307, 418, 494, 521, 583, 757
AluI AGCT 9 cut(s) 74, 197, 283, 307, 418, 494, 521, 583, 757
Alw21I GWGCWC 2 cut(s) 901, 1138
Alw26I GTCTC 2 cut(s) 5, 1135
Alw44I GTGCAC 2 cut(s) 897, 1134
AlwI GGATC 4 cut(s) 116, 239, 688, 1063
AoxI GGCC 2 cut(s) 831, 1115
ApaLI GTGCAC 2 cut(s) 897, 1134
ApeKI GCWGC 3 cut(s) 131, 251, 518
ApoI RAATTY 1 cut(s) 139
AspA2I CCTAGG 1 cut(s) 1112
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 1032
AsuHPI GGTGA 2 cut(s) 16, 980
AsuII TTCGAA 1 cut(s) 512
AsuNHI GCTAGC 1 cut(s) 307
AvaII GGWCC 1 cut(s) 1032
AvrII CCTAGG 1 cut(s) 1112
BaeGI GKGCMC 3 cut(s) 648, 901, 1138
BanI GGYRCC 1 cut(s) 1060
BauI CACGAG 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 901, 1138
BbvI GCAGC 3 cut(s) 143, 263, 530
BccI CCATC 4 cut(s) 227, 850, 959, 985
BcgI CGANNNNNNTGC 4 cut(s) 110, 144, 492, 526
BciT130I CCWGG 1 cut(s) 1131
BcoDI GTCTC 2 cut(s) 5, 1135
BfaI CTAG 4 cut(s) 308, 332, 584, 1113
BfmI CTRYAG 2 cut(s) 249, 701
BfuAI ACCTGC 2 cut(s) 85, 1079
BisI GCNGC 5 cut(s) 132, 252, 519, 672, 1003
BlnI CCTAGG 1 cut(s) 1112
BlsI GCNGC 5 cut(s) 133, 253, 520, 673, 1004
Bme1390I CCNGG 1 cut(s) 1131
Bme18I GGWCC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 1032
BmiI GGNNCC 1 cut(s) 1062
BmrFI CCNGG 1 cut(s) 1131
BmsI GCATC 4 cut(s) 193, 326, 475, 997
BmtI GCTAGC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 512
BsaHI GRCGYC 2 cut(s) 27, 363
BsaJI CCNNGG 4 cut(s) 31, 312, 1028, 1112
Bsc4I CCNNNNNNNGG 3 cut(s) 703, 983, 1078
Bse3DI GCAATG 1 cut(s) 880
BseBI CCWGG 1 cut(s) 1131
BseDI CCNNGG 4 cut(s) 31, 312, 1028, 1112
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 703, 983, 1078
BseMI GCAATG 1 cut(s) 880
BseMII CTCAG 2 cut(s) 615, 738
BseSI GKGCMC 3 cut(s) 648, 901, 1138
BseXI GCAGC 3 cut(s) 143, 263, 530
BsgI GTGCAG 2 cut(s) 1107, 1115
Bsh1236I CGCG 2 cut(s) 846, 1005
BshFI GGCC 2 cut(s) 833, 1117
BshNI GGYRCC 1 cut(s) 1060
BsiHKAI GWGCWC 2 cut(s) 901, 1138
BslI CCNNNNNNNGG 3 cut(s) 703, 983, 1078
BsmAI GTCTC 2 cut(s) 5, 1135
BsmBI CGTCTC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 2 cut(s) 833, 1117
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 3 cut(s) 648, 901, 1138
Bsp143I GATC 5 cut(s) 63, 121, 244, 693, 1068
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 5 cut(s) 48, 388, 671, 844, 1003
BspANI GGCC 2 cut(s) 833, 1117
BspCNI CTCAG 2 cut(s) 616, 739
BspFNI CGCG 2 cut(s) 846, 1005
BspLI GGNNCC 1 cut(s) 1062
BspMAI CTGCAG 2 cut(s) 253, 705
BspMI ACCTGC 2 cut(s) 85, 1079
BspOI GCTAGC 1 cut(s) 311
BspPI GGATC 4 cut(s) 116, 239, 688, 1063
BspQI GCTCTTC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 880
BssECI CCNNGG 4 cut(s) 31, 312, 1028, 1112
BssMI GATC 5 cut(s) 63, 121, 244, 693, 1068
BssNI GRCGYC 2 cut(s) 27, 363
BssSI CACGAG 1 cut(s) 900
BssT1I CCWWGG 3 cut(s) 312, 1028, 1112
Bst2BI CACGAG 1 cut(s) 900
Bst2UI CCWGG 1 cut(s) 1131
Bst4CI ACNGT 2 cut(s) 357, 570
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 2 cut(s) 27, 363
BstAPI GCANNNNNTGC 1 cut(s) 680
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 2 cut(s) 624, 747
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 2 cut(s) 846, 1005
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 66, 124, 247, 696, 1071
BstMAI GTCTC 2 cut(s) 5, 1135
BstMBI GATC 5 cut(s) 63, 121, 244, 693, 1068
BstMWI GCNNNNNNNGC 6 cut(s) 56, 203, 260, 323, 500, 680
BstNI CCWGG 1 cut(s) 1131
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 1 cut(s) 1129
BstSFI CTRYAG 2 cut(s) 249, 701
BstSLI GKGCMC 3 cut(s) 648, 901, 1138
BstUI CGCG 2 cut(s) 846, 1005
BstV1I GCAGC 3 cut(s) 143, 263, 530
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 1068
BstYI RGATCY 1 cut(s) 1068
BsuRI GGCC 2 cut(s) 833, 1117
BtgI CCRYGG 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 1020
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 744
BveI ACCTGC 2 cut(s) 85, 1079
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 1032
CseI GACGC 1 cut(s) 371
CsiI ACCWGGT 1 cut(s) 1129
CviAII CATG 4 cut(s) 209, 313, 712, 769
DdeI CTNAG 2 cut(s) 624, 747
DpnI GATC 5 cut(s) 65, 123, 246, 695, 1070
DpnII GATC 5 cut(s) 63, 121, 244, 693, 1068
DraIII CACNNNGTG 1 cut(s) 1133
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco130I CCWWGG 3 cut(s) 312, 1028, 1112
Eco47I GGWCC 1 cut(s) 1032
Eco57I CTGAAG 2 cut(s) 510, 516
EcoO109I RGGNCCY 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 1129
EcoT14I CCWWGG 3 cut(s) 312, 1028, 1112
ErhI CCWWGG 3 cut(s) 312, 1028, 1112
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 4 cut(s) 212, 316, 715, 772
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 4 cut(s) 208, 312, 711, 768
FauI CCCGC 2 cut(s) 381, 851
Fnu4HI GCNGC 5 cut(s) 132, 252, 519, 672, 1003
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 5 cut(s) 132, 252, 519, 672, 1003
FspBI CTAG 4 cut(s) 308, 332, 584, 1113
GlaI GCGC 1 cut(s) 135
GluI GCNGC 5 cut(s) 132, 252, 519, 672, 1003
HaeIII GGCC 2 cut(s) 833, 1117
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 2 cut(s) 27, 363
Hin1II CATG 4 cut(s) 212, 316, 715, 772
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HindIII AAGCTT 3 cut(s) 72, 195, 416
HinfI GANTC 4 cut(s) 222, 441, 797, 995
HphI GGTGA 2 cut(s) 16, 980
Hpy166II GTNNAC 3 cut(s) 899, 951, 1136
Hpy188I TCNGA 2 cut(s) 35, 855
Hpy188III TCNNGA 6 cut(s) 67, 104, 219, 482, 866, 937
Hpy8I GTNNAC 3 cut(s) 899, 951, 1136
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 3 cut(s) 341, 728, 1026
HpyCH4III ACNGT 2 cut(s) 357, 570
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 203, 260, 323, 500, 680
HpyF3I CTNAG 2 cut(s) 624, 747
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 2 cut(s) 27, 363
Hsp92II CATG 4 cut(s) 212, 316, 715, 772
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 5 cut(s) 63, 121, 244, 693, 1068
LguI GCTCTTC 1 cut(s) 747
Lsp1109I GCAGC 3 cut(s) 143, 263, 530
LweI GCATC 4 cut(s) 193, 326, 475, 997
MabI ACCWGGT 1 cut(s) 1129
MaeI CTAG 4 cut(s) 308, 332, 584, 1113
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 176, 664
MalI GATC 5 cut(s) 65, 123, 246, 695, 1070
MboI GATC 5 cut(s) 63, 121, 244, 693, 1068
MboII GAAGA 8 cut(s) 422, 601, 719, 764, 773, 854, 925, 1140
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 1068
MhlI GDGCHC 3 cut(s) 648, 901, 1138
MluCI AATT 7 cut(s) 139, 237, 255, 546, 739, 785, 990
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 721
MnlI CCTC 8 cut(s) 41, 135, 283, 463, 742, 823, 880, 1045
MseI TTAA 3 cut(s) 84, 173, 914
MspA1I CMGCKG 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 1131
MunI CAATTG 1 cut(s) 546
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 1131
MvnI CGCG 2 cut(s) 846, 1005
MwoI GCNNNNNNNGC 6 cut(s) 56, 203, 260, 323, 500, 680
NcoI CCATGG 1 cut(s) 312
NdeII GATC 5 cut(s) 63, 121, 244, 693, 1068
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 4 cut(s) 212, 316, 715, 772
NlaIV GGNNCC 1 cut(s) 1062
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 772
NspV TTCGAA 1 cut(s) 512
PaqCI CACCTGC 1 cut(s) 1079
PciSI GCTCTTC 1 cut(s) 747
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 222, 797, 995
PflMI CCANNNNNTGG 1 cut(s) 983
PkrI GCNGC 5 cut(s) 133, 253, 520, 673, 1004
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
PpuMI RGGWCCY 1 cut(s) 1032
Psp5II RGGWCCY 1 cut(s) 1032
Psp6I CCWGG 1 cut(s) 1129
PspGI CCWGG 1 cut(s) 1129
PspN4I GGNNCC 1 cut(s) 1062
PspPI GGNCC 1 cut(s) 1032
PspPPI RGGWCCY 1 cut(s) 1032
PstI CTGCAG 2 cut(s) 253, 705
PsuI RGATCY 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 3 cut(s) 84, 173, 914
SatI GCNGC 5 cut(s) 132, 252, 519, 672, 1003
Sau3AI GATC 5 cut(s) 63, 121, 244, 693, 1068
Sau96I GGNCC 1 cut(s) 1032
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 1131
SduI GDGCHC 3 cut(s) 648, 901, 1138
SexAI ACCWGGT 1 cut(s) 1129
SfaNI GCATC 4 cut(s) 193, 326, 475, 997
SfcI CTRYAG 2 cut(s) 249, 701
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 1 cut(s) 1032
Sse9I AATT 7 cut(s) 139, 237, 255, 546, 739, 785, 990
SsiI CCGC 5 cut(s) 48, 388, 671, 844, 1003
SspI AATATT 1 cut(s) 20
SspMI CTAG 4 cut(s) 308, 332, 584, 1113
StyD4I CCNGG 1 cut(s) 1129
StyI CCWWGG 3 cut(s) 312, 1028, 1112
TaaI ACNGT 2 cut(s) 357, 570
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 512, 998
TasI AATT 7 cut(s) 139, 237, 255, 546, 739, 785, 990
TauI GCSGC 2 cut(s) 674, 1005
TfiI GAWTC 3 cut(s) 222, 797, 995
Tru1I TTAA 3 cut(s) 84, 173, 914
Tru9I TTAA 3 cut(s) 84, 173, 914
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 3 cut(s) 131, 251, 518
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 89, 640, 728
TspGWI ACGGA 2 cut(s) 29, 884
TspRI CASTG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 983
VneI GTGCAC 2 cut(s) 897, 1134
VpaK11BI GGWCC 1 cut(s) 1032
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmaJI CCTAGG 1 cut(s) 1112
XspI CTAG 4 cut(s) 308, 332, 584, 1113
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.