AT1G21340

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015373
Physical Location & Seq
Forward (+)
7476022 .. 7476899
878 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21340.1

Sequence Viewer

Length: 783 bp
ATGTTGCCGTACATTGGACACAACAGCTACCAGCAGCACCAGTTTCCGTTGCCGGAGATGGAAATTCCGGAGAAGTGGAAGCTTTCTTACGAACAAGAGGCTATTACTGCTCCGGCTTGTCCTCGTTGTGCATCGTCCAACACCAAGTTTTGTTATTACAACAACTACAGCTTGTCTCAGCCTAGATACTTCTGCAAGGGTTGCCGTCGTTACTGGACGAAAGGCGGTTCTCTCCGCAACATTCCTGTAGGTGGAGGCTGTCGCAAGAGAAGTCGAAGCAGACAGAACAGTCACAAAAGGTTTGGCCGGAACGAGAATCGGCCAGATGGTCTTATTAACCAAGATGATGGATTCCAGTCCAGCCCTCCTGGTTCTGATATTGATTTGGCTGCGGTTTTCGCACAATATGTGACTGATCGGAGCCCTTCTAGTACAGATAATACTACTGGATCCGATCAAGATTCACCGATAACAACAACCACTCATGCTTTAGAATCTTTGAGTTGGGATATCTGCCAAGAAACTGATGTGGATCTTGGATTCTACGGGGAATTCAATAATCTAACTCAGAAGACCAAAGAGGATCAAGAAGTATTTGGTCAGTTTCTCCAAGAAGATCGAGAGGAGATCTTCGAGTTCCAGGGTTTACTCGATGACAAAGAGATTCAAGAGATCCTGGAATGCTCATTCTCAGAGGAGCCAGACCAGTTAGTTTCTCAGGGGAGCTTCATGATCAATGGTGATAACTGGAGTTCAACAGATCTTACCAGGTTCGGGATTTGA

Protein Analysis

260

Amino Acids

29.68

Weight (kDa)

4.73

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 39 - 92 1e-31 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21340
fragaria_vesca FvH4_2g14390
malus_domestica MD05G1018200.v1.1 MD10G1017800.v1.1
prunus_persica Prupe.8G022200_v2.0.a1
pyrus_communis pycom05g01080
rosa_chinensis RchiOBHm_Chr6g0276721
rosa_laevigata RLG00000013370
rosa_multiflora Rmu_sc0000263.1_g000003
rosa_roxburghii Rroxscaffold_7G00192050
rosa_rugosa Rorug06G0103100
rosa_samantha Rh6AG213500 Rh6BG218400 Rh6CG221200 Rh6DG211100
rosa_wichuraiana Rw6G018670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 288
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 3 cut(s) 225, 235, 392
AclWI GGATC 5 cut(s) 444, 457, 540, 591, 667
AcoI YGGCCR 2 cut(s) 304, 320
AcsI RAATTY 2 cut(s) 63, 551
AfaI GTAC 2 cut(s) 11, 433
AfiI CCNNNNNNNGG 3 cut(s) 14, 251, 774
AgsI TTSAA 3 cut(s) 556, 668, 756
AjnI CCWGG 4 cut(s) 367, 639, 675, 767
AluBI AGCT 4 cut(s) 27, 82, 171, 726
AluI AGCT 4 cut(s) 27, 82, 171, 726
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 5 cut(s) 444, 457, 540, 591, 667
Aor13HI TCCGGA 1 cut(s) 67
AoxI GGCC 2 cut(s) 304, 320
ApeKI GCWGC 2 cut(s) 34, 389
ApoI RAATTY 2 cut(s) 63, 551
AsuHPI GGTGA 2 cut(s) 456, 752
BamHI GGATCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 425
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 46, 376
BccI CCATC 3 cut(s) 52, 320, 341
BceAI ACGGC 1 cut(s) 189
BciT130I CCWGG 4 cut(s) 369, 641, 677, 769
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 183, 429
BfmI CTRYAG 2 cut(s) 166, 246
BglII AGATCT 2 cut(s) 627, 760
BisI GCNGC 2 cut(s) 35, 390
BlsI GCNGC 2 cut(s) 36, 391
Bme1390I CCNGG 4 cut(s) 369, 641, 677, 769
BmiI GGNNCC 3 cut(s) 422, 451, 699
BmrFI CCNGG 4 cut(s) 369, 641, 677, 769
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 769
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 640
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 251, 774
Bse1I ACTGG 6 cut(s) 40, 218, 355, 451, 706, 752
Bse8I GATNNNNATC 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 4 cut(s) 369, 641, 677, 769
BseDI CCNNGG 1 cut(s) 640
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 3 cut(s) 14, 251, 774
BseMII CTCAG 4 cut(s) 191, 581, 705, 731
BseNI ACTGG 6 cut(s) 40, 218, 355, 451, 706, 752
BseRI GAGGAG 2 cut(s) 638, 710
BseXI GCAGC 2 cut(s) 46, 376
BshFI GGCC 2 cut(s) 306, 322
BsiSI CCGG 4 cut(s) 53, 68, 113, 307
BslI CCNNNNNNNGG 3 cut(s) 14, 251, 774
BsmAI GTCTC 1 cut(s) 180
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 2 cut(s) 306, 322
Bsp1286I GDGCHC 1 cut(s) 425
Bsp13I TCCGGA 1 cut(s) 67
BspACI CCGC 3 cut(s) 225, 235, 392
BspANI GGCC 2 cut(s) 306, 322
BspCNI CTCAG 4 cut(s) 190, 580, 704, 730
BspEI TCCGGA 1 cut(s) 67
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 3 cut(s) 422, 451, 699
BspPI GGATC 5 cut(s) 444, 457, 540, 591, 667
BsrI ACTGG 6 cut(s) 40, 218, 355, 451, 706, 752
BssECI CCNNGG 1 cut(s) 640
Bst2UI CCWGG 4 cut(s) 369, 641, 677, 769
Bst4CI ACNGT 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 201
BstDEI CTNAG 4 cut(s) 177, 567, 691, 717
BstMAI GTCTC 1 cut(s) 180
BstMWI GCNNNNNNNGC 3 cut(s) 107, 201, 398
BstNI CCWGG 4 cut(s) 369, 641, 677, 769
BstSCI CCNGG 4 cut(s) 367, 639, 675, 767
BstSFI CTRYAG 2 cut(s) 166, 246
BstV1I GCAGC 2 cut(s) 46, 376
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 5 cut(s) 449, 532, 627, 672, 760
BstXI CCANNNNNNTGG 1 cut(s) 347
BstYI RGATCY 5 cut(s) 449, 532, 627, 672, 760
BsuRI GGCC 2 cut(s) 306, 322
CciI TCATGA 1 cut(s) 729
CsiI ACCWGGT 1 cut(s) 767
Csp6I GTAC 2 cut(s) 10, 432
CviAII CATG 2 cut(s) 485, 730
CviQI GTAC 2 cut(s) 10, 432
DdeI CTNAG 4 cut(s) 177, 567, 691, 717
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
EaeI YGGCCR 2 cut(s) 304, 320
Eco24I GRGCYC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 551
EcoRII CCWGG 4 cut(s) 367, 639, 675, 767
EcoRV GATATC 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 425
FaeI CATG 2 cut(s) 488, 733
FaiI YATR 3 cut(s) 408, 486, 731
FatI CATG 2 cut(s) 484, 729
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 2 cut(s) 35, 390
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 2 cut(s) 35, 390
FspBI CTAG 2 cut(s) 183, 429
GluI GCNGC 2 cut(s) 35, 390
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 2 cut(s) 306, 322
HapII CCGG 4 cut(s) 53, 68, 113, 307
Hin1II CATG 2 cut(s) 488, 733
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 6 cut(s) 316, 351, 461, 494, 540, 664
HpaII CCGG 4 cut(s) 53, 68, 113, 307
HphI GGTGA 2 cut(s) 456, 752
Hpy166II GTNNAC 1 cut(s) 647
Hpy188I TCNGA 5 cut(s) 376, 420, 454, 570, 694
Hpy188III TCNNGA 7 cut(s) 68, 458, 587, 620, 668, 730, 775
Hpy8I GTNNAC 1 cut(s) 647
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 131, 195
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 201, 398
HpyF3I CTNAG 4 cut(s) 177, 567, 691, 717
Hsp92II CATG 2 cut(s) 488, 733
Kpn2I TCCGGA 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 732
LmnI GCTCC 4 cut(s) 115, 420, 697, 723
Lsp1109I GCAGC 2 cut(s) 46, 376
LweI GCATC 1 cut(s) 140
MabI ACCWGGT 1 cut(s) 767
MaeI CTAG 2 cut(s) 183, 429
MaeIII GTNAC 3 cut(s) 209, 290, 409
MboII GAAGA 3 cut(s) 583, 622, 626
MflI RGATCY 5 cut(s) 449, 532, 627, 672, 760
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 2 cut(s) 63, 551
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 7 cut(s) 91, 132, 248, 375, 574, 616, 688
MroI TCCGGA 1 cut(s) 67
MseI TTAA 1 cut(s) 336
MspI CCGG 4 cut(s) 53, 68, 113, 307
MspR9I CCNGG 4 cut(s) 369, 641, 677, 769
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 4 cut(s) 369, 641, 677, 769
MwoI GCNNNNNNNGC 3 cut(s) 107, 201, 398
NlaIII CATG 2 cut(s) 488, 733
NlaIV GGNNCC 3 cut(s) 422, 451, 699
NmuCI GTSAC 2 cut(s) 290, 409
PagI TCATGA 1 cut(s) 729
PctI GAATGC 1 cut(s) 686
PfeI GAWTC 6 cut(s) 316, 351, 461, 494, 540, 664
PfoI TCCNGGA 1 cut(s) 675
PkrI GCNGC 2 cut(s) 36, 391
Psp6I CCWGG 4 cut(s) 367, 639, 675, 767
PspGI CCWGG 4 cut(s) 367, 639, 675, 767
PspN4I GGNNCC 3 cut(s) 422, 451, 699
PsuI RGATCY 5 cut(s) 449, 532, 627, 672, 760
RsaI GTAC 2 cut(s) 11, 433
RsaNI GTAC 2 cut(s) 10, 432
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 35, 390
ScrFI CCNGG 4 cut(s) 369, 641, 677, 769
SduI GDGCHC 1 cut(s) 425
SetI ASST 7 cut(s) 29, 84, 173, 253, 302, 728, 773
SexAI ACCWGGT 1 cut(s) 767
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 2 cut(s) 166, 246
Sse9I AATT 2 cut(s) 63, 551
SsiI CCGC 3 cut(s) 225, 235, 392
SspMI CTAG 2 cut(s) 183, 429
StyD4I CCNGG 4 cut(s) 367, 639, 675, 767
TaaI ACNGT 1 cut(s) 290
TaqI TCGA 4 cut(s) 274, 619, 633, 651
TasI AATT 2 cut(s) 63, 551
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 6 cut(s) 316, 351, 461, 494, 540, 664
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 2 cut(s) 290, 409
TseI GCWGC 2 cut(s) 34, 389
Tsp45I GTSAC 2 cut(s) 290, 409
TspDTI ATGAA 1 cut(s) 718
TspGWI ACGGA 1 cut(s) 36
XapI RAATTY 2 cut(s) 63, 551
XspI CTAG 2 cut(s) 183, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.