FvH4_2g14390

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015373
Physical Location & Seq
Forward (+)
12657532 .. 12658894
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14390.t1

Sequence Viewer

Length: 906 bp
ATGTTCACAGCGCCAGTTCTCGAACAGATGCTTCAATGTCAATCCGGACAACCATTGATCATGAATTCCCAAAAGCCTTCGTGGAAGCCTCACGTCGAGATCGCTCCAAACTGCCCCCGGTGCGCGTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCACAGCCTCGCTACTTCTGCAAAGGCTGCCGGAGATACTGGACCAAAGGCGGGTCCTTGAGGAACGTCCCCGTCGGCGGCGGTTGTAGAAAGAACCGCCGCAGCAGGTCTGCCAGGCTCTCGCAGGCTGACCGGATTTCGATGAGTTACTATCGTCGCAACAGCTCGAGTAGTAGCGGTGATGATCTGTCCGAGCAGCACTCCAAGGAAGGAGCCAACGGGTCGGATATCGACATGGCTGCTGTATTTGCTAATTTCTTGAACCAAAACTCTTGCAACGGACATGATCCCAATTTGGTTGGATCAGAATCGATCCCTGATGATGTTCATGAGGCAAATGCATTATCCGATCACTCCCAAAATTCTTTGAACCCCGCGGAAGATCTTCTTGAATCAGTGGAGCTACTTCAAGGACTCGTACTTCCTGATCATGATCATCAACAATCACACGAAGAGGATAATATTCACAATGTTATGGGAAATCATCAATACCATCAGGATTTGAGTATTCATGAATTTGGTTTGCAGGGTCTGTTAGACGATGAGGATGTGTTTTGGTCTGATACAACAGCAAGTTTGACCAGTAGTACTACTAGTTTCAATTGGCAAGAGTTGGATAATTCATTCCCATCTGATGATGATGATCATATGAAGATACCGACCACCACAACGAATCTATGTAGCGATAACTGGAGCTCCTTTGATTTTTCAGGCTTGGGAGTTTTCTCAGGATCTTAA

Protein Analysis

302

Amino Acids

33.56

Weight (kDa)

4.96

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 36 - 90 3.1e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21340
fragaria_vesca FvH4_2g14390
malus_domestica MD05G1018200.v1.1 MD10G1017800.v1.1
prunus_persica Prupe.8G022200_v2.0.a1
pyrus_communis pycom05g01080
rosa_chinensis RchiOBHm_Chr6g0276721
rosa_laevigata RLG00000013370
rosa_multiflora Rmu_sc0000263.1_g000003
rosa_roxburghii Rroxscaffold_7G00192050
rosa_rugosa Rorug06G0103100
rosa_samantha Rh6AG213500 Rh6BG218400 Rh6CG221200 Rh6DG211100
rosa_wichuraiana Rw6G018670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccII CGCG 2 cut(s) 125, 545
AccIII TCCGGA 1 cut(s) 44
AciI CCGC 8 cut(s) 219, 246, 249, 265, 268, 345, 543, 545
AclWI GGATC 3 cut(s) 449, 475, 478
AcsI RAATTY 3 cut(s) 64, 529, 683
AfaI GTAC 2 cut(s) 588, 757
AfiI CCNNNNNNNGG 2 cut(s) 219, 245
AgsI TTSAA 6 cut(s) 35, 430, 538, 560, 578, 769
AhlI ACTAGT 1 cut(s) 761
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 3 cut(s) 333, 571, 864
AluI AGCT 3 cut(s) 333, 571, 864
Alw21I GWGCWC 1 cut(s) 866
AlwI GGATC 3 cut(s) 449, 475, 478
AlwNI CAGNNNCTG 1 cut(s) 700
Ama87I CYCGRG 1 cut(s) 334
Aor13HI TCCGGA 1 cut(s) 44
ApeKI GCWGC 4 cut(s) 195, 270, 364, 407
ApoI RAATTY 3 cut(s) 64, 529, 683
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 2 cut(s) 13, 125
AspS9I GGNCC 2 cut(s) 210, 222
AsuC2I CCSGG 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 359
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 2 cut(s) 210, 222
BanII GRGCYC 1 cut(s) 866
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 866
BbvI GCAGC 4 cut(s) 182, 282, 376, 394
BccI CCATC 2 cut(s) 669, 805
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 4 cut(s) 57, 595, 601, 811
BcnI CCSGG 1 cut(s) 118
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 264
BglII AGATCT 1 cut(s) 550
BisI GCNGC 6 cut(s) 196, 247, 268, 271, 365, 408
BlsI GCNGC 6 cut(s) 197, 248, 269, 272, 366, 409
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 2 cut(s) 118, 283
Bme18I GGWCC 2 cut(s) 210, 222
BmeT110I CYCGRG 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 210, 222
BmiI GGNNCC 2 cut(s) 223, 382
BmrFI CCNGG 2 cut(s) 118, 283
BmsI GCATC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 880
BpuEI CTTGAG 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 479
BsaBI GATNNNNATC 3 cut(s) 475, 600, 810
BsaJI CCNNGG 3 cut(s) 116, 372, 543
BsaWI WCCGGW 2 cut(s) 44, 300
BsaXI ACNNNNNCTCC 2 cut(s) 848, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 245
Bse1I ACTGG 4 cut(s) 14, 212, 750, 863
Bse8I GATNNNNATC 3 cut(s) 475, 600, 810
BseAI TCCGGA 1 cut(s) 44
BseBI CCWGG 1 cut(s) 283
BseCI ATCGAT 1 cut(s) 479
BseDI CCNNGG 3 cut(s) 116, 372, 543
BseGI GGATG 1 cut(s) 721
BseJI GATNNNNATC 3 cut(s) 475, 600, 810
BseLI CCNNNNNNNGG 2 cut(s) 219, 245
BseNI ACTGG 4 cut(s) 14, 212, 750, 863
BseXI GCAGC 4 cut(s) 182, 282, 376, 394
Bsh1236I CGCG 2 cut(s) 125, 545
BshVI ATCGAT 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 866
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 4 cut(s) 45, 118, 199, 301
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 219, 245
BsmFI GGGAC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 866
Bsp13I TCCGGA 1 cut(s) 44
BspACI CCGC 8 cut(s) 219, 246, 249, 265, 268, 345, 543, 545
BspDI ATCGAT 1 cut(s) 479
BspEI TCCGGA 1 cut(s) 44
BspFNI CGCG 2 cut(s) 125, 545
BspHI TCATGA 4 cut(s) 60, 496, 598, 679
BspLI GGNNCC 2 cut(s) 223, 382
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 3 cut(s) 449, 475, 478
BsrI ACTGG 4 cut(s) 14, 212, 750, 863
BssECI CCNNGG 3 cut(s) 116, 372, 543
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 615
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 1 cut(s) 895
BstDSI CCRYGG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 721
BstFNI CGCG 2 cut(s) 125, 545
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 125
BstMWI GCNNNNNNNGC 4 cut(s) 120, 186, 195, 416
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 116, 281
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 2 cut(s) 125, 545
BstV1I GCAGC 4 cut(s) 182, 282, 376, 394
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 550, 899
BstYI RGATCY 2 cut(s) 550, 899
Bsu15I ATCGAT 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 479
BtgI CCRYGG 1 cut(s) 543
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 1 cut(s) 570
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 700
CciI TCATGA 4 cut(s) 60, 496, 598, 679
CfoI GCGC 2 cut(s) 13, 125
Cfr13I GGNCC 2 cut(s) 210, 222
Cfr42I CCGCGG 1 cut(s) 546
ClaI ATCGAT 1 cut(s) 479
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 587, 756
CviAII CATG 6 cut(s) 61, 403, 452, 497, 599, 680
CviQI GTAC 2 cut(s) 587, 756
DdeI CTNAG 1 cut(s) 895
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 866
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 210, 222
Eco53kI GAGCTC 1 cut(s) 864
Eco88I CYCGRG 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 864
EcoO109I RGGNCCY 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 281
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 866
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 6 cut(s) 64, 406, 455, 500, 602, 683
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 221
FatI CATG 6 cut(s) 60, 402, 451, 496, 598, 679
FauI CCCGC 2 cut(s) 212, 550
FauNDI CATATG 1 cut(s) 816
FbaI TGATCA 4 cut(s) 57, 595, 601, 811
Fnu4HI GCNGC 6 cut(s) 196, 247, 268, 271, 365, 408
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 1 cut(s) 866
Fsp4HI GCNGC 6 cut(s) 196, 247, 268, 271, 365, 408
FspBI CTAG 1 cut(s) 762
GlaI GCGC 2 cut(s) 12, 124
GluI GCNGC 6 cut(s) 196, 247, 268, 271, 365, 408
GsuI CTGGAG 1 cut(s) 880
HaeII RGCGCY 1 cut(s) 14
HapII CCGG 4 cut(s) 45, 118, 199, 301
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 13, 125
Hin1II CATG 6 cut(s) 64, 406, 455, 500, 602, 683
Hin6I GCGC 2 cut(s) 11, 123
HinP1I GCGC 2 cut(s) 11, 123
HinfI GANTC 4 cut(s) 476, 560, 582, 841
HpaII CCGG 4 cut(s) 45, 118, 199, 301
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 361, 394, 475, 517, 730, 802
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 98, 245, 327
HpyAV CCTTC 2 cut(s) 87, 371
HpyCH4IV ACGT 2 cut(s) 93, 234
HpyCH4V TGCA 4 cut(s) 189, 444, 509, 694
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 186, 195, 416
HpyF3I CTNAG 1 cut(s) 895
HpySE526I ACGT 2 cut(s) 93, 234
Hsp92II CATG 6 cut(s) 64, 406, 455, 500, 602, 683
HspAI GCGC 2 cut(s) 11, 123
Kpn2I TCCGGA 1 cut(s) 44
Ksp22I TGATCA 4 cut(s) 57, 595, 601, 811
KspI CCGCGG 1 cut(s) 546
LmnI GCTCC 5 cut(s) 109, 380, 568, 861, 869
Lsp1109I GCAGC 4 cut(s) 182, 282, 376, 394
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 762
MaeII ACGT 2 cut(s) 93, 234
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 5 cut(s) 120, 545, 560, 632, 832
MfeI CAATTG 1 cut(s) 769
MflI RGATCY 2 cut(s) 550, 899
MhlI GDGCHC 1 cut(s) 866
MluCI AATT 7 cut(s) 64, 421, 460, 529, 683, 769, 787
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 4 cut(s) 156, 372, 448, 762
MnlI CCTC 7 cut(s) 99, 176, 186, 222, 493, 616, 706
Mph1103I ATGCAT 1 cut(s) 511
MroI TCCGGA 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 1 cut(s) 904
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 4 cut(s) 45, 118, 199, 301
MspR9I CCNGG 2 cut(s) 118, 283
MunI CAATTG 1 cut(s) 769
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 2 cut(s) 125, 545
MwoI GCNNNNNNNGC 4 cut(s) 120, 186, 195, 416
NciI CCSGG 1 cut(s) 118
NdeI CATATG 1 cut(s) 816
NlaIII CATG 6 cut(s) 64, 406, 455, 500, 602, 683
NlaIV GGNNCC 2 cut(s) 223, 382
NsiI ATGCAT 1 cut(s) 511
PaeR7I CTCGAG 1 cut(s) 334
PagI TCATGA 4 cut(s) 60, 496, 598, 679
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 3 cut(s) 476, 560, 841
PkrI GCNGC 6 cut(s) 197, 248, 269, 272, 366, 409
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 866
Psp5II RGGWCCY 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 2 cut(s) 223, 382
PspPI GGNCC 2 cut(s) 210, 222
PspPPI RGGWCCY 1 cut(s) 222
PspXI VCTCGAGB 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 2 cut(s) 550, 899
RsaI GTAC 2 cut(s) 588, 757
RsaNI GTAC 2 cut(s) 587, 756
SacI GAGCTC 1 cut(s) 866
SacII CCGCGG 1 cut(s) 546
SaqAI TTAA 1 cut(s) 904
SatI GCNGC 6 cut(s) 196, 247, 268, 271, 365, 408
Sau96I GGNCC 2 cut(s) 210, 222
ScaI AGTACT 1 cut(s) 757
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 118, 283
SduI GDGCHC 1 cut(s) 866
SetI ASST 6 cut(s) 96, 237, 278, 335, 573, 866
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 334
Sfr303I CCGCGG 1 cut(s) 546
SgrBI CCGCGG 1 cut(s) 546
SinI GGWCC 2 cut(s) 210, 222
SlaI CTCGAG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 226, 334
SmoI CTYRAG 2 cut(s) 226, 334
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 7 cut(s) 64, 421, 460, 529, 683, 769, 787
SsiI CCGC 8 cut(s) 219, 246, 249, 265, 268, 345, 543, 545
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 762
SstI GAGCTC 1 cut(s) 866
StyD4I CCNGG 2 cut(s) 116, 281
StyI CCWWGG 1 cut(s) 372
TaiI ACGT 2 cut(s) 96, 237
TaqI TCGA 6 cut(s) 21, 96, 308, 335, 399, 479
TasI AATT 7 cut(s) 64, 421, 460, 529, 683, 769, 787
TatI WGTACW 1 cut(s) 755
TauI GCSGC 2 cut(s) 249, 270
TfiI GAWTC 3 cut(s) 476, 560, 841
Tru1I TTAA 1 cut(s) 904
Tru9I TTAA 1 cut(s) 904
TscAI CASTG 1 cut(s) 570
TseI GCWGC 4 cut(s) 195, 270, 364, 407
TspDTI ATGAA 6 cut(s) 77, 485, 668, 696, 780, 833
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 570
VpaK11BI GGWCC 2 cut(s) 210, 222
XapI RAATTY 3 cut(s) 64, 529, 683
XhoI CTCGAG 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 762
ZrmI AGTACT 1 cut(s) 757
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.