Prupe.8G022200_v2.0.a1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0015373
Physical Location & Seq
Reverse (-)
2004829 .. 2006052
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G022200.1

Sequence Viewer

Length: 954 bp
ATGTTCTCAGCTCCTGTTGAGCAGATGCTGCAATGCCCGTCTGGGGCGTTCATCATGATGGACAAGAGATCATGGAACAAGCCCCACATTGAGGTTGCCCCAAATTGTCCTCGCTGTGCCTCTTCCAACACCAAATTTTGCTACTACAACAACTACAGCCTCTCGCAGCCTAGGTACTTTTGCAAAGGGTGCAGGAGGTATTGGACCAAAGGCGGTTCTTTGCGCAACGTGCCTGTAGGTGGCGGTTGTCGCAAGAATCGCCGCGGGAAGGCGGCCAAGCTCTCGCAGGCTGACCGCGCTTCTTTGTCTTACTTTAATCATAACTCGAGTAGTTCTGATGACACATCTGGGCAGTACTCAAGTGGTACTGATAACCAGCCAGGTGGAGGCAATGGATCAGATATTGATTTGGCTGCTGTGTTTGCCAAGTTTTTGAACAACAACTCCTCCAGCCCTGCTGATGAGCATGATCATCTTGATCAAGATCATGAACCCAATTTGGTAATTTCCAGCTCAGAGCTAAATGATGTTGATGGGTCCCAAAATTCTTCAAGGGCTGATCAAGATCTTGTTGAAGCCGTTGATCACTTGCTTGGAGGCCTAGTAGCTCCTGATCATCAACATCAACAAATACAAGAAGAAAATGTTCAGAGTTTTATGGGAATTAATCATGATGAACAAGATGATATGAATATTCACGAATTTGGGTTACAGGGTTTGCTAGGAAACGACGACCAAGTGGTGCAAGATGTGTTTTGGTCCGATGATGCAGCAACGACGTCGTCTTTGACGAGTAGCACTGCTAGTTTTTCATGGCAGCCCATGGTGCATCTGCAAGAGCTGGACTATTCACTACCGTCCGATGATGATCATATGAACATCCCCACCAATCTTTGTAGTGATAATTGGAGCTCCTTTGATTTTTCAGGATTTGAAGTTTTCTCACGGTCTTAA

Protein Analysis

318

Amino Acids

35.04

Weight (kDa)

4.67

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21340
fragaria_vesca FvH4_2g14390
malus_domestica MD05G1018200.v1.1 MD10G1017800.v1.1
prunus_persica Prupe.8G022200_v2.0.a1
pyrus_communis pycom05g01080
rosa_chinensis RchiOBHm_Chr6g0276721
rosa_laevigata RLG00000013370
rosa_multiflora Rmu_sc0000263.1_g000003
rosa_roxburghii Rroxscaffold_7G00192050
rosa_rugosa Rorug06G0103100
rosa_samantha Rh6AG213500 Rh6BG218400 Rh6CG221200 Rh6DG211100
rosa_wichuraiana Rw6G018670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
Acc16I TGCGCA 1 cut(s) 224
AccII CGCG 2 cut(s) 264, 297
AciI CCGC 6 cut(s) 213, 243, 262, 264, 272, 295
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 134, 544, 701
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 3 cut(s) 176, 356, 367
AfiI CCNNNNNNNGG 5 cut(s) 43, 91, 239, 268, 386
AgsI TTSAA 4 cut(s) 436, 552, 575, 935
AjnI CCWGG 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 7 cut(s) 11, 280, 513, 520, 608, 841, 912
AluI AGCT 7 cut(s) 11, 280, 513, 520, 608, 841, 912
Alw21I GWGCWC 1 cut(s) 914
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 2 cut(s) 14, 28
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 2 cut(s) 273, 598
ApeKI GCWGC 5 cut(s) 28, 166, 413, 770, 817
ApoI RAATTY 3 cut(s) 134, 544, 701
ArsI GACNNNNNNTTYG 2 cut(s) 769, 801
AseI ATTAAT 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 645
AspA2I CCTAGG 1 cut(s) 170
AspLEI GCGC 2 cut(s) 225, 299
AspS9I GGNCC 3 cut(s) 204, 537, 759
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 3 cut(s) 204, 537, 759
AvrII CCTAGG 1 cut(s) 170
BanII GRGCYC 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 5 cut(s) 15, 178, 400, 782, 829
BccI CCATC 2 cut(s) 52, 527
BceAI ACGGC 1 cut(s) 563
BcgI CGANNNNNNTGC 2 cut(s) 762, 796
BciT130I CCWGG 1 cut(s) 381
BclI TGATCA 6 cut(s) 469, 478, 559, 583, 613, 868
BfaI CTAG 4 cut(s) 171, 602, 722, 804
BfmI CTRYAG 2 cut(s) 154, 234
BglII AGATCT 1 cut(s) 565
BisI GCNGC 7 cut(s) 29, 167, 262, 273, 414, 771, 818
BlnI CCTAGG 1 cut(s) 170
BlsI GCNGC 7 cut(s) 30, 168, 263, 274, 415, 772, 819
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 3 cut(s) 204, 537, 759
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 3 cut(s) 204, 537, 759
BmiI GGNNCC 2 cut(s) 538, 539
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 15, 757, 838
BpmI CTGGAG 1 cut(s) 433
BpuEI CTTGAG 1 cut(s) 343
BsaBI GATNNNNATC 3 cut(s) 483, 564, 867
BsaHI GRCGYC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 170, 262, 822
BsaXI ACNNNNNCTCC 6 cut(s) 428, 431, 458, 461, 588, 618
Bsc4I CCNNNNNNNGG 5 cut(s) 43, 91, 239, 268, 386
Bse3DI GCAATG 2 cut(s) 38, 397
Bse8I GATNNNNATC 3 cut(s) 483, 564, 867
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 3 cut(s) 170, 262, 822
BseGI GGATG 1 cut(s) 879
BseJI GATNNNNATC 3 cut(s) 483, 564, 867
BseLI CCNNNNNNNGG 5 cut(s) 43, 91, 239, 268, 386
BseMI GCAATG 2 cut(s) 38, 397
BseMII CTCAG 2 cut(s) 21, 528
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 5 cut(s) 15, 178, 400, 782, 829
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 264, 297
BshFI GGCC 2 cut(s) 275, 600
BsiHKAI GWGCWC 1 cut(s) 914
BsiHKCI CYCGRG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 5 cut(s) 43, 91, 239, 268, 386
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 2 cut(s) 275, 600
BsoBI CYCGRG 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 914
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 6 cut(s) 213, 243, 262, 264, 272, 295
BspANI GGCC 2 cut(s) 275, 600
BspCNI CTCAG 2 cut(s) 20, 527
BspFNI CGCG 2 cut(s) 264, 297
BspHI TCATGA 3 cut(s) 54, 487, 670
BspLI GGNNCC 2 cut(s) 538, 539
BspPI GGATC 1 cut(s) 403
BsrDI GCAATG 2 cut(s) 38, 397
BssECI CCNNGG 3 cut(s) 170, 262, 822
BssNI GRCGYC 1 cut(s) 779
BssT1I CCWWGG 2 cut(s) 170, 822
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 2 cut(s) 858, 948
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 1 cut(s) 779
BstAPI GCANNNNNTGC 2 cut(s) 28, 189
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 7, 514
BstDSI CCRYGG 2 cut(s) 262, 822
BstF5I GGATG 1 cut(s) 879
BstFNI CGCG 2 cut(s) 264, 297
BstHHI GCGC 2 cut(s) 225, 299
BstMWI GCNNNNNNNGC 8 cut(s) 28, 189, 229, 249, 258, 296, 422, 826
BstNI CCWGG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 154, 234
BstUI CGCG 2 cut(s) 264, 297
BstV1I GCAGC 5 cut(s) 15, 178, 400, 782, 829
BstX2I RGATCY 1 cut(s) 565
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 2 cut(s) 275, 600
BtgI CCRYGG 2 cut(s) 262, 822
BtsCI GGATG 1 cut(s) 879
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 1 cut(s) 798
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 2 cut(s) 14, 28
CciI TCATGA 3 cut(s) 54, 487, 670
CfoI GCGC 2 cut(s) 225, 299
Cfr13I GGNCC 3 cut(s) 204, 537, 759
Cfr42I CCGCGG 1 cut(s) 265
Csp6I GTAC 3 cut(s) 175, 355, 366
CviAII CATG 7 cut(s) 55, 72, 467, 488, 671, 813, 823
CviQI GTAC 3 cut(s) 175, 355, 366
DdeI CTNAG 2 cut(s) 7, 514
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Ecl136II GAGCTC 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 170, 822
Eco147I AGGCCT 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 914
Eco47I GGWCC 3 cut(s) 204, 537, 759
Eco53kI GAGCTC 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 912
EcoO109I RGGNCCY 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 2 cut(s) 170, 822
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 2 cut(s) 170, 822
FaeI CATG 7 cut(s) 58, 75, 470, 491, 674, 816, 826
FaqI GGGAC 1 cut(s) 523
FatI CATG 7 cut(s) 54, 71, 466, 487, 670, 812, 822
FauI CCCGC 1 cut(s) 257
FauNDI CATATG 1 cut(s) 873
FbaI TGATCA 6 cut(s) 469, 478, 559, 583, 613, 868
Fnu4HI GCNGC 7 cut(s) 29, 167, 262, 273, 414, 771, 818
FokI GGATG 1 cut(s) 866
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 7 cut(s) 29, 167, 262, 273, 414, 771, 818
FspBI CTAG 4 cut(s) 171, 602, 722, 804
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 2 cut(s) 224, 298
GluI GCNGC 7 cut(s) 29, 167, 262, 273, 414, 771, 818
GsuI CTGGAG 1 cut(s) 433
HaeIII GGCC 2 cut(s) 275, 600
HhaI GCGC 2 cut(s) 225, 299
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 7 cut(s) 58, 75, 470, 491, 674, 816, 826
Hin6I GCGC 2 cut(s) 223, 297
HinP1I GCGC 2 cut(s) 223, 297
HinfI GANTC 1 cut(s) 256
Hpy188I TCNGA 6 cut(s) 337, 400, 517, 651, 763, 862
Hpy188III TCNNGA 9 cut(s) 55, 476, 482, 488, 563, 611, 671, 698, 927
Hpy99I CGWCG 3 cut(s) 734, 781, 784
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 2 cut(s) 858, 948
HpyCH4IV ACGT 2 cut(s) 228, 779
HpyCH4V TGCA 7 cut(s) 31, 183, 192, 745, 770, 829, 835
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 189, 229, 249, 258, 296, 422, 826
HpyF3I CTNAG 2 cut(s) 7, 514
HpySE526I ACGT 2 cut(s) 228, 779
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 7 cut(s) 58, 75, 470, 491, 674, 816, 826
HspAI GCGC 2 cut(s) 223, 297
KflI GGGWCCC 1 cut(s) 537
Ksp22I TGATCA 6 cut(s) 469, 478, 559, 583, 613, 868
KspI CCGCGG 1 cut(s) 265
LmnI GCTCC 4 cut(s) 16, 613, 909, 917
Lsp1109I GCAGC 5 cut(s) 15, 178, 400, 782, 829
LweI GCATC 3 cut(s) 15, 757, 838
MaeI CTAG 4 cut(s) 171, 602, 722, 804
MaeII ACGT 2 cut(s) 228, 779
MaeIII GTNAC 1 cut(s) 708
MboII GAAGA 3 cut(s) 114, 540, 650
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 8 cut(s) 103, 134, 496, 504, 544, 663, 701, 904
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 85, 120, 130, 170, 189, 380, 457, 590
MroXI GAANNNNTTC 1 cut(s) 645
MseI TTAA 3 cut(s) 315, 666, 952
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 381
MvaI CCWGG 1 cut(s) 381
MvnI CGCG 2 cut(s) 264, 297
MwoI GCNNNNNNNGC 8 cut(s) 28, 189, 229, 249, 258, 296, 422, 826
NcoI CCATGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 873
NlaIII CATG 7 cut(s) 58, 75, 470, 491, 674, 816, 826
NlaIV GGNNCC 2 cut(s) 538, 539
NsbI TGCGCA 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 325
PagI TCATGA 3 cut(s) 54, 487, 670
PceI AGGCCT 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 788
PdmI GAANNNNTTC 1 cut(s) 645
PfeI GAWTC 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 781
PkrI GCNGC 7 cut(s) 30, 168, 263, 274, 415, 772, 819
PpuMI RGGWCCY 1 cut(s) 537
PshBI ATTAAT 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 914
Psp5II RGGWCCY 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 379
PspGI CCWGG 1 cut(s) 379
PspN4I GGNNCC 2 cut(s) 538, 539
PspPI GGNCC 3 cut(s) 204, 537, 759
PspPPI RGGWCCY 1 cut(s) 537
PspXI VCTCGAGB 1 cut(s) 325
PstNI CAGNNNCTG 2 cut(s) 14, 28
PsuI RGATCY 1 cut(s) 565
PsyI GACNNNGTC 1 cut(s) 781
RsaI GTAC 3 cut(s) 176, 356, 367
RsaNI GTAC 3 cut(s) 175, 355, 366
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 914
SacII CCGCGG 1 cut(s) 265
SaqAI TTAA 3 cut(s) 315, 666, 952
SatI GCNGC 7 cut(s) 29, 167, 262, 273, 414, 771, 818
Sau96I GGNCC 3 cut(s) 204, 537, 759
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 3 cut(s) 15, 757, 838
SfcI CTRYAG 2 cut(s) 154, 234
Sfr274I CTCGAG 1 cut(s) 325
Sfr303I CCGCGG 1 cut(s) 265
SgrBI CCGCGG 1 cut(s) 265
SinI GGWCC 3 cut(s) 204, 537, 759
SlaI CTCGAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 325, 358
SmoI CTYRAG 2 cut(s) 325, 358
Sse9I AATT 8 cut(s) 103, 134, 496, 504, 544, 663, 701, 904
SseBI AGGCCT 1 cut(s) 600
SsiI CCGC 6 cut(s) 213, 243, 262, 264, 272, 295
SspI AATATT 1 cut(s) 694
SspMI CTAG 4 cut(s) 171, 602, 722, 804
SstI GAGCTC 1 cut(s) 914
StuI AGGCCT 1 cut(s) 600
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 2 cut(s) 170, 822
TaaI ACNGT 2 cut(s) 858, 948
TaiI ACGT 2 cut(s) 231, 782
TaqI TCGA 1 cut(s) 326
TasI AATT 8 cut(s) 103, 134, 496, 504, 544, 663, 701, 904
TatI WGTACW 1 cut(s) 354
TauI GCSGC 2 cut(s) 264, 275
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 3 cut(s) 315, 666, 952
Tru9I TTAA 3 cut(s) 315, 666, 952
TscAI CASTG 1 cut(s) 805
TseI GCWGC 5 cut(s) 28, 166, 413, 770, 817
TspDTI ATGAA 6 cut(s) 40, 504, 690, 704, 801, 890
TspRI CASTG 1 cut(s) 805
Tth111I GACNNNGTC 1 cut(s) 781
VpaK11BI GGWCC 3 cut(s) 204, 537, 759
VspI ATTAAT 1 cut(s) 666
XapI RAATTY 3 cut(s) 134, 544, 701
XhoI CTCGAG 1 cut(s) 325
XmaJI CCTAGG 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 645
XspI CTAG 4 cut(s) 171, 602, 722, 804
ZraI GACGTC 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.