Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015373

Physical Location & Seq

Genomic Coordinates Forward (+)

13685764 .. 13688393

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0103100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

ATGACGAACCAACGTGAAGGAACAAATAAGAGGGACTTCAGCACCGCGATTCTGGACCGCAAGAAGGCTCCAAATCGCCTTGTTGTTGATGAAGCTGTGGTGGATGACAACTCCACCATCCAACTCTGCCCGGAGACCATGGAGAAGCTCCAGCTCTTTCGTGGCGACACAGTCTTGATCAAGGGAAAGAAGCATACAGACACAATCTGTATTGCTCTTGCTGATGACACCTGTGAAGAACCAAAGATAAGGATGAACAAGGTTGTGAGGAACAACCTTAGGGTTAGGCTTGGTGATGTTGTTTCCATTCACCAATGCGCTGATGTCAAGTATGGAAACCGTGTCCACATTCTTCCTATAGATGACACAATCGAAGGGATCACTGGAAATCTGTTTGATGCCTACTTGAAGCCTTATTTCCGGGAAGCCTACCGCCCGGTGAGGAAAGGCGATCTTTTCCTAGTGAGAGGAGGAATGAGGAGTGTGGAGTTCAAGGTTGTTGAGACTGATCCTCCTGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGCGAGGGAGAACCTGTTAGAAGGGACGATGAGGAAAGATTAGATGAGGTAGGGTATGATGATATTGGTGGAGTTAGGAAACAGATGGCTCAGATTCGCGAATTGGTTGAGCTGCCTCTGAGGCATCCTCAGCTGTTTAAATCAATAGGTGTCAAACCACCAAAGGGTATTCTGCTCTATGGTCCTCCTGGAACTGGAAAGACTCTAATTGCAAGAGCTGTTGCTAATGAAACTGGGGCCTTCTTTTTCTGTATCAATGGACCAGAAATCATGTCCAAGATGGCTGGAGAGAGTGAGAGCAACCTCAGGAAAGCTTTTGAGGAAGCAGAGAAGAATGCACCATCAATCATATTTATTGATGAGATTGATTCCATTGCTCCCAAGAGAGAGAAGACTAATGGAGAAATTGAGAGGAGGATTGTTTCCCAGCTCTTGACACTTATGGATGGACTAAAGTCCCGAGCACATGTAATTGTAATGGCGGCTACTAATCGTCCAAACAGTATTGACCCGGCTCTTAGAAGGTTTGGAAGATTTGATAGGGAAATAGATATTGGTGTTCCAGATGAAGTTGGGCGCCTTGAGGTCCTCCACATTCATACCAAGAACATGAAGCTTGCTGAAGATGTCGATTTAGAAAGGGTTGCCAAGGACACTCACGGTTATGTTGGGGCTGATCTAGCTGCTTTATCAACTGAGGCTGCACTTCAATGCATCCGAGAAAAGATGGATGTGATTGACTTGGAAGATGAGACAATAGATGCTGAGGTACTTAACTCAATGGCGGTTACAAATGAGCACTTCCAAACCGCTCTTGGAACAAGCAACCCATCTGCTCTTCGTGAGACGGTTGTTGAAGTGCCCAATGTCACTTGGGATGCAATTGGAGGTCTGGAAAATGTTAAGAGAGAACTTCAAGAGACTGTTCAATATCCTGTTGAGCACCCGGAGAAATTTGAGAAATTCGGAATGTCACCCTCAAAGGGAGTTCTTTTCTATGGCCCTCCTGGATGCGGTAAAACTCTTCTGGCCAAGGCTATTGCCAATGAGTGTCAGGCAAACTTCATCAGTATCAAGGGACCTGAATTGCTAACCATGTGGTTTGGAGAGAGTGAGGCCAATGTCAGGGAAATATTTGACAAGGCTCGTGCATCTGCTCCATGTGTCCTCTTCTTCGATGAGCTTGATTCCATTGCTACTAAAAGGGGTAGTAGTGCAGGTGATTCTGGAGGTGCTGATAGGGTTTTGAACCAACTCCTTACAGAAATGGATGGAGTGTCTGCCAAGAAAACTGTGTTCATTATTGGGGCAACCAACAGACCTGACATTATAGACCCTGCACTTCTTCGACCAGGACGTCTGGATCAGTTGCTTTACATCCCTCTCCCTGATGAGGAATCTCGCTATCAAATATTCAAGTCTTGCTTGAGGAAATCTCCGGTTTCCAAATATGTGGACCTCAGTGCTCTTGCCAAGCACACACCAGGATTTAGTGGTGCTGATATCACAGAAATATGCCAGCGTGCTTGCAAATATGCCATTAGAGACAACATTGAGAAAGATATCGAGAGGGAGAGGAGGAGAAGTGAGAATCCTGAGATTATGGAAGATGATGAGAATGAAGTAGCTGAGATCACTGCAGCTCATTTTGAGGAATCGATGAAGTATGCTCGCAGGAGCGTCAGTGATGCTGATATCCTCAAGTACCAGGCATTTGCGACTACATTGCACCAGGCAAGAGGGTTTGGAGCAGATGAGTTCAGGTTTCCCAGTGGTTCGGGTGCTGCTGTTGGATCTGATCCTTTTGCAACTACTAACGCTGGTGAAGCTGATGAAGATCTTTATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

800

Amino Acids

88.98

Weight (kDa)

5.08

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC48_N	PF02359	26 - 107	4.7e-21	Cell division protein 48 (CDC48), N-terminal domain
CDC48_2	PF02933	127 - 191	4.9e-12	Cell division protein 48 (CDC48), domain 2
RuvB_N	PF05496	240 - 314	8.9e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA	PF00004	241 - 370	2.7e-48	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	393 - 434	4.1e-14	AAA+ lid domain
AAA	PF00004	514 - 646	3.2e-47	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	669 - 707	1.6e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21340
fragaria_vesca	FvH4_2g14390
malus_domestica	MD05G1018200.v1.1 MD10G1017800.v1.1
prunus_persica	Prupe.8G022200_v2.0.a1
pyrus_communis	pycom05g01080
rosa_chinensis	RchiOBHm_Chr6g0276721
rosa_laevigata	RLG00000013370
rosa_multiflora	Rmu_sc0000263.1_g000003
rosa_roxburghii	Rroxscaffold_7G00192050
rosa_rugosa	Rorug06G0103100
rosa_samantha	Rh6AG213500 Rh6BG218400 Rh6CG221200 Rh6DG211100
rosa_wichuraiana	Rw6G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1760
AasI	GACNNNNNNGTC	1 cut(s)	1908
AatII	GACGTC	1 cut(s)	1912
Acc36I	ACCTGC	1 cut(s)	1760
AccB1I	GGYRCC	1 cut(s)	1128
AccBSI	CCGCTC	1 cut(s)	1364
AccII	CGCG	2 cut(s)	47, 651
AciI	CCGC	7 cut(s)	45, 58, 433, 1034, 1337, 1362, 1566
AclWI	GGATC	5 cut(s)	386, 503, 1923, 2345, 2353
AcoI	YGGCCR	1 cut(s)	1581
AcsI	RAATTY	3 cut(s)	546, 1505, 1514
AcuI	CTGAAG	2 cut(s)	22, 1194
AcyI	GRCGYC	2 cut(s)	1129, 1909
AfaI	GTAC	2 cut(s)	1323, 2258
AfiI	CCNNNNNNNGG	7 cut(s)	64, 716, 746, 1535, 1565, 1677, 1945
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	8 cut(s)	409, 493, 1262, 1409, 1469, 1481, 1801, 1969
AjnI	CCWGG	6 cut(s)	739, 1558, 1903, 2035, 2259, 2283
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
Alw21I	GWGCWC	4 cut(s)	1018, 1353, 1497, 2020
Alw26I	GTCTC	6 cut(s)	128, 497, 1298, 1391, 1466, 2091
AlwI	GGATC	5 cut(s)	386, 503, 1923, 2345, 2353
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	1011
AoxI	GGCC	4 cut(s)	789, 1552, 1581, 1668
ApeKI	GCWGC	5 cut(s)	664, 1235, 1253, 2192, 2336
ApoI	RAATTY	3 cut(s)	546, 1505, 1514
AspLEI	GCGC	2 cut(s)	320, 1131
AspS9I	GGNCC	8 cut(s)	55, 734, 789, 812, 1138, 1553, 1631, 2008
AsuC2I	CCSGG	5 cut(s)	131, 422, 437, 1064, 1499
AsuHPI	GGTGA	6 cut(s)	302, 305, 451, 1518, 1784, 2387
AvaI	CYCGRG	1 cut(s)	1011
AvaII	GGWCC	6 cut(s)	55, 734, 812, 1138, 1631, 2008
AxyI	CCTNAGG	2 cut(s)	278, 857
BaeGI	GKGCMC	1 cut(s)	1416
BalI	TGGCCA	1 cut(s)	1583
BanI	GGYRCC	1 cut(s)	1128
BauI	CACGAG	1 cut(s)	1698
BbsI	GAAGAC	1 cut(s)	950
Bbv12I	GWGCWC	4 cut(s)	1018, 1353, 1497, 2020
BbvCI	CCTCAGC	2 cut(s)	681, 1317
BbvI	GCAGC	5 cut(s)	651, 1222, 1240, 2204, 2323
BccI	CCATC	8 cut(s)	125, 631, 826, 901, 992, 1273, 1390, 1817
BcgI	CGANNNNNNTGC	2 cut(s)	2260, 2294
BciT130I	CCWGG	6 cut(s)	741, 1560, 1905, 2037, 2261, 2285
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	5 cut(s)	131, 422, 437, 1064, 1499
BcoDI	GTCTC	6 cut(s)	128, 497, 1298, 1391, 1466, 2091
BfaI	CTAG	2 cut(s)	461, 1232
BfmI	CTRYAG	2 cut(s)	357, 2190
BfoI	RGCGCY	1 cut(s)	1132
BfuAI	ACCTGC	1 cut(s)	1760
BglI	GCCNNNNNGGC	1 cut(s)	673
BglII	AGATCT	1 cut(s)	2389
BisI	GCNGC	6 cut(s)	665, 1035, 1236, 1254, 2193, 2337
BlsI	GCNGC	6 cut(s)	666, 1036, 1237, 1255, 2194, 2338
Bme18I	GGWCC	6 cut(s)	55, 734, 812, 1138, 1631, 2008
BmeT110I	CYCGRG	1 cut(s)	1011
BmgT120I	GGNCC	8 cut(s)	55, 734, 789, 812, 1138, 1553, 1631, 2008
BmiI	GGNNCC	4 cut(s)	69, 790, 1130, 1632
BmrI	ACTGGG	2 cut(s)	795, 2316
BmsI	GCATC	8 cut(s)	388, 685, 1275, 1303, 1420, 1553, 1712, 2230
BmuI	ACTGGG	2 cut(s)	795, 2316
BoxI	GACNNNNGTC	1 cut(s)	1006
BpiI	GAAGAC	1 cut(s)	950
BplI	GAGNNNNNCTC	4 cut(s)	664, 696, 1972, 2004
BpmI	CTGGAG	4 cut(s)	134, 519, 858, 1800
Bpu10I	CCTNAGC	2 cut(s)	681, 1317
BpuEI	CTTGAG	3 cut(s)	1154, 1999, 2237
BpuMI	CCSGG	5 cut(s)	131, 422, 437, 1064, 1499
Bsa29I	ATCGAT	1 cut(s)	2210
BsaBI	GATNNNNATC	1 cut(s)	2388
BsaHI	GRCGYC	2 cut(s)	1129, 1909
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	138, 1200, 1584
BsaWI	WCCGGW	1 cut(s)	1990
BsaXI	ACNNNNNCTCC	8 cut(s)	496, 526, 552, 582, 2122, 2152, 2221, 2251
Bsc4I	CCNNNNNNNGG	7 cut(s)	64, 716, 746, 1535, 1565, 1677, 1945
Bse1I	ACTGG	4 cut(s)	388, 751, 790, 2322
Bse21I	CCTNAGG	2 cut(s)	278, 857
Bse3DI	GCAATG	3 cut(s)	924, 1743, 2276
Bse8I	GATNNNNATC	1 cut(s)	2388
BseBI	CCWGG	6 cut(s)	741, 1560, 1905, 2037, 2261, 2285
BseCI	ATCGAT	1 cut(s)	2210
BseDI	CCNNGG	3 cut(s)	138, 1200, 1584
BseJI	GATNNNNATC	1 cut(s)	2388
BseLI	CCNNNNNNNGG	7 cut(s)	64, 716, 746, 1535, 1565, 1677, 1945
BseMI	GCAATG	3 cut(s)	924, 1743, 2276
BseNI	ACTGG	4 cut(s)	388, 751, 790, 2322
BseRI	GAGGAG	5 cut(s)	483, 493, 979, 2143, 2146
BseSI	GKGCMC	1 cut(s)	1416
BseXI	GCAGC	5 cut(s)	651, 1222, 1240, 2204, 2323
BseYI	CCCAGC	1 cut(s)	978
BsgI	GTGCAG	3 cut(s)	1239, 1788, 1875
Bsh1236I	CGCG	2 cut(s)	47, 651
BshFI	GGCC	4 cut(s)	791, 1554, 1583, 1670
BshNI	GGYRCC	1 cut(s)	1128
BshVI	ATCGAT	1 cut(s)	2210
BsiHKAI	GWGCWC	4 cut(s)	1018, 1353, 1497, 2020
BsiHKCI	CYCGRG	1 cut(s)	1011
BsiSI	CCGG	6 cut(s)	131, 421, 437, 1064, 1499, 1991
BslFI	GGGAC	4 cut(s)	47, 590, 994, 1644
BslI	CCNNNNNNNGG	7 cut(s)	64, 716, 746, 1535, 1565, 1677, 1945
BsmAI	GTCTC	6 cut(s)	128, 497, 1298, 1391, 1466, 2091
BsmBI	CGTCTC	1 cut(s)	1391
BsmFI	GGGAC	4 cut(s)	47, 590, 994, 1644
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	4 cut(s)	791, 1554, 1583, 1670
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	1011
Bsp1286I	GDGCHC	5 cut(s)	1018, 1353, 1416, 1497, 2020
Bsp19I	CCATGG	1 cut(s)	138
Bsp68I	TCGCGA	1 cut(s)	651
BspACI	CCGC	7 cut(s)	45, 58, 433, 1034, 1337, 1362, 1566
BspANI	GGCC	4 cut(s)	791, 1554, 1583, 1670
BspDI	ATCGAT	1 cut(s)	2210
BspFNI	CGCG	2 cut(s)	47, 651
BspLI	GGNNCC	4 cut(s)	69, 790, 1130, 1632
BspMAI	CTGCAG	1 cut(s)	2194
BspMI	ACCTGC	1 cut(s)	1760
BspPI	GGATC	5 cut(s)	386, 503, 1923, 2345, 2353
BspQI	GCTCTTC	1 cut(s)	1395
BspT107I	GGYRCC	1 cut(s)	1128
BspTNI	GGTCTC	1 cut(s)	128
BsrBI	CCGCTC	1 cut(s)	1364
BsrDI	GCAATG	3 cut(s)	924, 1743, 2276
BsrI	ACTGG	4 cut(s)	388, 751, 790, 2322
BssECI	CCNNGG	3 cut(s)	138, 1200, 1584
BssNI	GRCGYC	2 cut(s)	1129, 1909
BssSI	CACGAG	1 cut(s)	1698
BssT1I	CCWWGG	3 cut(s)	138, 1200, 1584
Bst2BI	CACGAG	1 cut(s)	1698
Bst2UI	CCWGG	6 cut(s)	741, 1560, 1905, 2037, 2261, 2285
Bst4CI	ACNGT	7 cut(s)	172, 341, 1055, 1214, 1402, 1477, 1846
Bst6I	CTCTTC	3 cut(s)	1395, 1581, 1727
BstACI	GRCGYC	2 cut(s)	1129, 1909
BstC8I	GCNNGC	5 cut(s)	1170, 2072, 2076, 2080, 2224
BstDSI	CCRYGG	1 cut(s)	138
BstFNI	CGCG	2 cut(s)	47, 651
BstH2I	RGCGCY	1 cut(s)	1132
BstHHI	GCGC	2 cut(s)	320, 1131
BstMAI	GTCTC	6 cut(s)	128, 497, 1298, 1391, 1466, 2091
BstMWI	GCNNNNNNNGC	4 cut(s)	673, 682, 1232, 2378
BstNI	CCWGG	6 cut(s)	741, 1560, 1905, 2037, 2261, 2285
BstNSI	RCATGY	1 cut(s)	1022
BstPAI	GACNNNNGTC	1 cut(s)	1006
BstSFI	CTRYAG	2 cut(s)	357, 2190
BstSLI	GKGCMC	1 cut(s)	1416
BstUI	CGCG	2 cut(s)	47, 651
BstV1I	GCAGC	5 cut(s)	651, 1222, 1240, 2204, 2323
BstV2I	GAAGAC	1 cut(s)	950
BstX2I	RGATCY	2 cut(s)	2345, 2389
BstXI	CCANNNNNNTGG	1 cut(s)	2005
BstYI	RGATCY	2 cut(s)	2345, 2389
Bsu15I	ATCGAT	1 cut(s)	2210
Bsu36I	CCTNAGG	2 cut(s)	278, 857
BsuRI	GGCC	4 cut(s)	791, 1554, 1583, 1670
BsuTUI	ATCGAT	1 cut(s)	2210
BtgI	CCRYGG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	2187
BtsIMutI	CAGTG	6 cut(s)	381, 540, 2020, 2187, 2242, 2329
BtuMI	TCGCGA	1 cut(s)	651
BveI	ACCTGC	1 cut(s)	1760
Cac8I	GCNNGC	5 cut(s)	1170, 2072, 2076, 2080, 2224
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	2 cut(s)	320, 1131
Cfr13I	GGNCC	8 cut(s)	55, 734, 789, 812, 1138, 1553, 1631, 2008
ClaI	ATCGAT	1 cut(s)	2210
CseI	GACGC	1 cut(s)	2221
Csp6I	GTAC	2 cut(s)	1322, 2257
CviAII	CATG	6 cut(s)	139, 823, 1019, 1162, 1648, 1713
CviQI	GTAC	2 cut(s)	1322, 2257
DinI	GGCGCC	1 cut(s)	1130
DraI	TTTAAA	1 cut(s)	691
DrdI	GACNNNNNNGTC	1 cut(s)	1908
DseDI	GACNNNNNNGTC	1 cut(s)	1908
EaeI	YGGCCR	1 cut(s)	1581
Eam1104I	CTCTTC	3 cut(s)	1395, 1581, 1727
EarI	CTCTTC	3 cut(s)	1395, 1581, 1727
Eco130I	CCWWGG	3 cut(s)	138, 1200, 1584
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	3 cut(s)	2056, 2116, 2248
Eco47I	GGWCC	6 cut(s)	55, 734, 812, 1138, 1631, 2008
Eco57I	CTGAAG	2 cut(s)	22, 1194
Eco81I	CCTNAGG	2 cut(s)	278, 857
Eco88I	CYCGRG	1 cut(s)	1011
EcoO109I	RGGNCCY	3 cut(s)	789, 1138, 1631
EcoRII	CCWGG	6 cut(s)	739, 1558, 1903, 2035, 2259, 2283
EcoRV	GATATC	3 cut(s)	2056, 2116, 2248
EcoT14I	CCWWGG	3 cut(s)	138, 1200, 1584
EcoT22I	ATGCAT	1 cut(s)	1268
EgeI	GGCGCC	1 cut(s)	1130
EheI	GGCGCC	1 cut(s)	1130
ErhI	CCWWGG	3 cut(s)	138, 1200, 1584
Esp3I	CGTCTC	1 cut(s)	1391
FaeI	CATG	6 cut(s)	142, 826, 1022, 1165, 1651, 1716
FalI	AAGNNNNNCTT	6 cut(s)	20, 52, 438, 470, 1961, 1993
FaqI	GGGAC	4 cut(s)	47, 590, 994, 1644
FatI	CATG	6 cut(s)	138, 822, 1018, 1161, 1647, 1712
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	665, 1035, 1236, 1254, 2193, 2337
Fsp4HI	GCNGC	6 cut(s)	665, 1035, 1236, 1254, 2193, 2337
FspBI	CTAG	2 cut(s)	461, 1232
GlaI	GCGC	2 cut(s)	319, 1130
GluI	GCNGC	6 cut(s)	665, 1035, 1236, 1254, 2193, 2337
GsaI	CCCAGC	1 cut(s)	982
GsuI	CTGGAG	4 cut(s)	134, 519, 858, 1800
HaeII	RGCGCY	1 cut(s)	1132
HaeIII	GGCC	4 cut(s)	791, 1554, 1583, 1670
HapII	CCGG	6 cut(s)	131, 421, 437, 1064, 1499, 1991
HgaI	GACGC	1 cut(s)	2221
HhaI	GCGC	2 cut(s)	320, 1131
Hin1I	GRCGYC	2 cut(s)	1129, 1909
Hin1II	CATG	6 cut(s)	142, 826, 1022, 1165, 1651, 1716
Hin6I	GCGC	2 cut(s)	318, 1129
HinP1I	GCGC	2 cut(s)	318, 1129
HindIII	AAGCTT	2 cut(s)	864, 1166
HinfI	GANTC	9 cut(s)	49, 646, 754, 920, 1739, 1775, 1949, 2143, 2207
HpaII	CCGG	6 cut(s)	131, 421, 437, 1064, 1499, 1991
HphI	GGTGA	6 cut(s)	302, 305, 451, 1518, 1784, 2387
Hpy166II	GTNNAC	2 cut(s)	346, 2008
Hpy188I	TCNGA	5 cut(s)	645, 672, 1271, 1520, 2350
Hpy8I	GTNNAC	2 cut(s)	346, 2008
HpyAV	CCTTC	6 cut(s)	11, 58, 368, 567, 802, 1068
HpyCH4III	ACNGT	7 cut(s)	172, 341, 1055, 1214, 1402, 1477, 1846
HpyCH4IV	ACGT	2 cut(s)	13, 1909
HpyF10VI	GCNNNNNNNGC	4 cut(s)	673, 682, 1232, 2378
HpySE526I	ACGT	2 cut(s)	13, 1909
Hsp92I	GRCGYC	2 cut(s)	1129, 1909
Hsp92II	CATG	6 cut(s)	142, 826, 1022, 1165, 1651, 1716
HspAI	GCGC	2 cut(s)	318, 1129
KasI	GGCGCC	1 cut(s)	1128
Ksp22I	TGATCA	1 cut(s)	177
LguI	GCTCTTC	1 cut(s)	1395
LmnI	GCTCC	7 cut(s)	73, 153, 538, 934, 1714, 2229, 2300
Lsp1109I	GCAGC	5 cut(s)	651, 1222, 1240, 2204, 2323
LweI	GCATC	8 cut(s)	388, 685, 1275, 1303, 1420, 1553, 1712, 2230
MaeI	CTAG	2 cut(s)	461, 1232
MaeII	ACGT	2 cut(s)	13, 1909
MaeIII	GTNAC	3 cut(s)	1339, 1420, 1524
MbiI	CCGCTC	1 cut(s)	1364
MfeI	CAATTG	1 cut(s)	1434
MflI	RGATCY	2 cut(s)	2345, 2389
MhlI	GDGCHC	5 cut(s)	1018, 1353, 1416, 1497, 2020
MlsI	TGGCCA	1 cut(s)	1583
MluCI	AATT	9 cut(s)	546, 653, 759, 957, 1023, 1434, 1505, 1514, 1637
MluNI	TGGCCA	1 cut(s)	1583
Mly113I	GGCGCC	1 cut(s)	1129
MlyI	GAGTC	1 cut(s)	748
MmeI	TCCRAC	2 cut(s)	145, 2323
Mox20I	TGGCCA	1 cut(s)	1583
Mph1103I	ATGCAT	1 cut(s)	1268
MscI	TGGCCA	1 cut(s)	1583
MseI	TTAA	3 cut(s)	690, 1326, 1455
MslI	CAYNNNNRTG	2 cut(s)	1215, 1261
Msp20I	TGGCCA	1 cut(s)	1583
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	6 cut(s)	131, 421, 437, 1064, 1499, 1991
MunI	CAATTG	1 cut(s)	1434
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	6 cut(s)	741, 1560, 1905, 2037, 2261, 2285
MvnI	CGCG	2 cut(s)	47, 651
MwoI	GCNNNNNNNGC	4 cut(s)	673, 682, 1232, 2378
NarI	GGCGCC	1 cut(s)	1129
NciI	CCSGG	5 cut(s)	131, 422, 437, 1064, 1499
NcoI	CCATGG	1 cut(s)	138
NlaIII	CATG	6 cut(s)	142, 826, 1022, 1165, 1651, 1716
NlaIV	GGNNCC	4 cut(s)	69, 790, 1130, 1632
NmuCI	GTSAC	2 cut(s)	1420, 1524
NruI	TCGCGA	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	1268
NspI	RCATGY	1 cut(s)	1022
PaqCI	CACCTGC	1 cut(s)	1760
PciI	ACATGT	1 cut(s)	1018
PciSI	GCTCTTC	1 cut(s)	1395
PcsI	WCGNNNNNNNCGW	1 cut(s)	1906
PctI	GAATGC	1 cut(s)	892
PfeI	GAWTC	8 cut(s)	49, 646, 920, 1739, 1775, 1949, 2143, 2207
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	3 cut(s)	420, 739, 1558
PkrI	GCNGC	6 cut(s)	666, 1036, 1237, 1255, 2194, 2338
PleI	GAGTC	1 cut(s)	748
PluTI	GGCGCC	1 cut(s)	1132
PpsI	GAGTC	1 cut(s)	748
PpuMI	RGGWCCY	2 cut(s)	1138, 1631
PscI	ACATGT	1 cut(s)	1018
PshAI	GACNNNNGTC	1 cut(s)	1006
Psp5II	RGGWCCY	2 cut(s)	1138, 1631
Psp6I	CCWGG	6 cut(s)	739, 1558, 1903, 2035, 2259, 2283
PspFI	CCCAGC	1 cut(s)	978
PspGI	CCWGG	6 cut(s)	739, 1558, 1903, 2035, 2259, 2283
PspN4I	GGNNCC	4 cut(s)	69, 790, 1130, 1632
PspPI	GGNCC	8 cut(s)	55, 734, 789, 812, 1138, 1553, 1631, 2008
PspPPI	RGGWCCY	2 cut(s)	1138, 1631
PstI	CTGCAG	1 cut(s)	2194
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	2 cut(s)	2345, 2389
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	685
RruI	TCGCGA	1 cut(s)	651
RsaI	GTAC	2 cut(s)	1323, 2258
RsaNI	GTAC	2 cut(s)	1322, 2257
RseI	CAYNNNNRTG	2 cut(s)	1215, 1261
SapI	GCTCTTC	1 cut(s)	1395
SaqAI	TTAA	3 cut(s)	690, 1326, 1455
SatI	GCNGC	6 cut(s)	665, 1035, 1236, 1254, 2193, 2337
Sau96I	GGNCC	8 cut(s)	55, 734, 789, 812, 1138, 1553, 1631, 2008
SchI	GAGTC	1 cut(s)	748
SduI	GDGCHC	5 cut(s)	1018, 1353, 1416, 1497, 2020
SfaNI	GCATC	8 cut(s)	388, 685, 1275, 1303, 1420, 1553, 1712, 2230
SfcI	CTRYAG	2 cut(s)	357, 2190
SfoI	GGCGCC	1 cut(s)	1130
SinI	GGWCC	6 cut(s)	55, 734, 812, 1138, 1631, 2008
SmiMI	CAYNNNNRTG	2 cut(s)	1215, 1261
SmlI	CTYRAG	3 cut(s)	1133, 1978, 2252
SmoI	CTYRAG	3 cut(s)	1133, 1978, 2252
Sse9I	AATT	9 cut(s)	546, 653, 759, 957, 1023, 1434, 1505, 1514, 1637
SsiI	CCGC	7 cut(s)	45, 58, 433, 1034, 1337, 1362, 1566
SspDI	GGCGCC	1 cut(s)	1128
SspI	AATATT	2 cut(s)	1686, 1965
SspMI	CTAG	2 cut(s)	461, 1232
StyI	CCWWGG	3 cut(s)	138, 1200, 1584
TaaI	ACNGT	7 cut(s)	172, 341, 1055, 1214, 1402, 1477, 1846
TaiI	ACGT	2 cut(s)	16, 1912
TaqI	TCGA	6 cut(s)	372, 1182, 1728, 1900, 2118, 2210
TasI	AATT	9 cut(s)	546, 653, 759, 957, 1023, 1434, 1505, 1514, 1637
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	8 cut(s)	49, 646, 920, 1739, 1775, 1949, 2143, 2207
Tru1I	TTAA	3 cut(s)	690, 1326, 1455
Tru9I	TTAA	3 cut(s)	690, 1326, 1455
TscAI	CASTG	6 cut(s)	388, 547, 2020, 2194, 2242, 2329
TseFI	GTSAC	2 cut(s)	1420, 1524
TseI	GCWGC	5 cut(s)	664, 1235, 1253, 2192, 2336
Tsp45I	GTSAC	2 cut(s)	1420, 1524
TspRI	CASTG	6 cut(s)	388, 547, 2020, 2194, 2242, 2329
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	6 cut(s)	55, 734, 812, 1138, 1631, 2008
XapI	RAATTY	3 cut(s)	546, 1505, 1514
XceI	RCATGY	1 cut(s)	1022
XcmI	CCANNNNNNNNNTGG	2 cut(s)	158, 1364
XspI	CTAG	2 cut(s)	461, 1232
ZraI	GACGTC	1 cut(s)	1910
Zsp2I	ATGCAT	1 cut(s)	1268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.