AT1G21450

Scarecrow-like protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
7508701 .. 7511801
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21450.1

Sequence Viewer

Length: 1782 bp
ATGGTGGAACAAACTGTGGTTAGAGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAGGAACCCGAAGCTTTACACGTTGAATGAGAATGGTAATAACAATGGTGTCAGTTCTGCTCAAATCTTTGATCCAGATAGGTCAAAGAATCCTTGTCTGACTGATGATTCTTACCCAAGCCAAAGTTATGAGAAGTACTTTCTTGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGGCTCTGGTGCCTCGGTTAGCTCATTTGGCTCTTTAGACTCATTTCCTTATCAGTCAAGACCAGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTGGATTCAACCTCTACTTCATCTACAAGGCTTTTGGGAGATTACCAAGCGGTTTCTTACAGTCCGAGCATGGATGTAGTGGAGGAGTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGGCGATGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCGTACCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAAGAATCATCGTCTGCAGATTCCAACTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATATCTTGTGCTCGTGCGCTATCTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAGCTGAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGTGGAAGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGCAAAGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCTTGTTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAAGAAGAAGTTCACATAATCGATTTCGATATAAACCAAGGGAACCAATACATGACACTGATACGAAGCATTGCTGAGTTGCCTGGTAAACGACCTCGCCTGAGGTTAACAGGAATTGATGACCCTGAATCAGTCCAACGCTCCATTGGAGGGCTAAGAATCATCGGTCTAAGACTCGAGCAACTCGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCAATGCCTTCAAAGACTTCGATTGTCTCTCCATCAACACTCGGTTGCAAACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCAACTTCACCACATGCCTGACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCACATGGTCAAAAGCTTAAACCCAAAGCTTGTCACGGTCGTTGAACAAGACGTGAACACAAACACTTCACCGTTCTTTCCCAGATTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGAGTCTCTAGACATGACACTTCCAAGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTGTCTCGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATACGAGGCTGCGGGAAAATGGAGAGCAAGGATGATGATGGCTGGATTCAATCCAAAACCAATGAGTGCTAAAGTAACCAACAATATACAAAACCTGATAAAGCAACAATATTGCAATAAGTACAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGTTGCTTCAGCTTGGAGGTAA

Protein Analysis

593

Amino Acids

66.7

Weight (kDa)

5.01

Isoelectric Point (pI)

47.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 223 - 593 1.6e-139 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1307
AccB1I GGYRCC 1 cut(s) 269
AccB7I CCANNNNNTGG 1 cut(s) 329
AciI CCGC 4 cut(s) 407, 825, 1327, 1592
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 822
AcsI RAATTY 3 cut(s) 344, 836, 1190
AcuI CTGAAG 3 cut(s) 723, 813, 1752
AfaI GTAC 3 cut(s) 218, 563, 1703
AfeI AGCGCT 1 cut(s) 492
AfiI CCNNNNNNNGG 3 cut(s) 81, 329, 1128
AflIII ACRYGT 1 cut(s) 99
AjiI CACGTC 1 cut(s) 1393
AjnI CCWGG 2 cut(s) 1060, 1249
Alw21I GWGCWC 2 cut(s) 691, 1731
Alw26I GTCTC 6 cut(s) 657, 762, 1228, 1470, 1527, 1529
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 1154
Aor51HI AGCGCT 1 cut(s) 492
AoxI GGCC 1 cut(s) 822
ApeKI GCWGC 5 cut(s) 788, 812, 890, 944, 1589
ApoI RAATTY 3 cut(s) 344, 836, 1190
ArsI GACNNNNNNTTYG 2 cut(s) 27, 59
Asp700I GAANNNNTTC 1 cut(s) 987
AspLEI GCGC 2 cut(s) 493, 697
AsuHPI GGTGA 4 cut(s) 989, 1280, 1401, 1736
AvaI CYCGRG 1 cut(s) 1154
AxyI CCTNAGG 1 cut(s) 1079
BanI GGYRCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 1731
BauI CACGAG 1 cut(s) 690
Bbv12I GWGCWC 2 cut(s) 691, 1731
BbvCI CCTCAGC 1 cut(s) 743
BbvI GCAGC 5 cut(s) 799, 800, 902, 956, 1576
BccI CCATC 3 cut(s) 79, 1237, 1612
BciT130I CCWGG 2 cut(s) 1062, 1251
BciVI GTATCC 1 cut(s) 1192
BcoDI GTCTC 6 cut(s) 657, 762, 1228, 1470, 1527, 1529
BfaI CTAG 3 cut(s) 809, 1469, 1530
BfmI CTRYAG 3 cut(s) 63, 612, 844
BfoI RGCGCY 1 cut(s) 494
BfuI GTATCC 1 cut(s) 1192
BisI GCNGC 6 cut(s) 789, 813, 825, 891, 945, 1590
BlsI GCNGC 6 cut(s) 790, 814, 826, 892, 946, 1591
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 1062, 1251
BmeT110I CYCGRG 1 cut(s) 1154
BmgBI CACGTC 1 cut(s) 1393
BmiI GGNNCC 3 cut(s) 86, 271, 1022
BmrFI CCNGG 2 cut(s) 1062, 1251
BmsI GCATC 1 cut(s) 592
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 480, 512
Bpu10I CCTNAGC 1 cut(s) 743
BpuEI CTTGAG 1 cut(s) 639
Bsa29I ATCGAT 1 cut(s) 999
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 4 cut(s) 273, 339, 763, 1015
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 329, 1128
Bse1I ACTGG 1 cut(s) 323
Bse21I CCTNAGG 1 cut(s) 1079
Bse3DI GCAATG 2 cut(s) 1047, 1206
BseBI CCWGG 2 cut(s) 1062, 1251
BseCI ATCGAT 1 cut(s) 999
BseDI CCNNGG 4 cut(s) 273, 339, 763, 1015
BseGI GGATG 7 cut(s) 71, 253, 338, 436, 883, 1509, 1617
BseLI CCNNNNNNNGG 3 cut(s) 81, 329, 1128
BseMI GCAATG 2 cut(s) 1047, 1206
BseMII CTCAG 5 cut(s) 734, 791, 1044, 1070, 1464
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 455, 1760
BseXI GCAGC 5 cut(s) 799, 800, 902, 956, 1576
BseYI CCCAGC 1 cut(s) 1740
Bsh1285I CGRYCG 1 cut(s) 1380
BshFI GGCC 1 cut(s) 824
BshNI GGYRCC 1 cut(s) 269
BshVI ATCGAT 1 cut(s) 999
BsiEI CGRYCG 1 cut(s) 1380
BsiHKAI GWGCWC 2 cut(s) 691, 1731
BsiHKCI CYCGRG 1 cut(s) 1154
BslFI GGGAC 1 cut(s) 1343
BslI CCNNNNNNNGG 3 cut(s) 81, 329, 1128
BsmAI GTCTC 6 cut(s) 657, 762, 1228, 1470, 1527, 1529
BsmFI GGGAC 1 cut(s) 1343
BsmI GAATGC 1 cut(s) 1277
BsnI GGCC 1 cut(s) 824
Bso31I GGTCTC 1 cut(s) 762
BsoBI CYCGRG 1 cut(s) 1154
Bsp1286I GDGCHC 2 cut(s) 691, 1731
Bsp143I GATC 2 cut(s) 151, 464
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 4 cut(s) 407, 825, 1327, 1592
BspANI GGCC 1 cut(s) 824
BspCNI CTCAG 5 cut(s) 735, 790, 1045, 1071, 1463
BspDI ATCGAT 1 cut(s) 999
BspLI GGNNCC 3 cut(s) 86, 271, 1022
BspMAI CTGCAG 2 cut(s) 67, 616
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 762
BsrDI GCAATG 2 cut(s) 1047, 1206
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 4 cut(s) 273, 339, 763, 1015
BssMI GATC 2 cut(s) 151, 464
BssSI CACGAG 1 cut(s) 690
BssT1I CCWWGG 3 cut(s) 339, 763, 1015
Bst2BI CACGAG 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 1062, 1251
Bst4CI ACNGT 7 cut(s) 16, 357, 419, 1318, 1378, 1413, 1521
BstC8I GCNNGC 2 cut(s) 888, 1555
BstDEI CTNAG 7 cut(s) 743, 777, 1053, 1079, 1133, 1148, 1450
BstDSI CCRYGG 1 cut(s) 339
BstENI CCTNNNNNAGG 1 cut(s) 79
BstF5I GGATG 7 cut(s) 71, 253, 338, 436, 883, 1509, 1617
BstH2I RGCGCY 1 cut(s) 494
BstHHI GCGC 2 cut(s) 493, 697
BstKTI GATC 2 cut(s) 154, 467
BstMAI GTCTC 6 cut(s) 657, 762, 1228, 1470, 1527, 1529
BstMBI GATC 2 cut(s) 151, 464
BstMCI CGRYCG 1 cut(s) 1380
BstMWI GCNNNNNNNGC 4 cut(s) 288, 821, 953, 1333
BstNI CCWGG 2 cut(s) 1062, 1251
BstNSI RCATGY 1 cut(s) 1297
BstSCI CCNGG 2 cut(s) 1060, 1249
BstSFI CTRYAG 3 cut(s) 63, 612, 844
BstV1I GCAGC 5 cut(s) 799, 800, 902, 956, 1576
Bsu15I ATCGAT 1 cut(s) 999
Bsu36I CCTNAGG 1 cut(s) 1079
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 1 cut(s) 824
BsuTUI ATCGAT 1 cut(s) 999
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 516
BtrI CACGTC 1 cut(s) 1393
BtsCI GGATG 7 cut(s) 71, 253, 338, 436, 883, 1509, 1617
BtsIMutI CAGTG 2 cut(s) 1034, 1526
Cac8I GCNNGC 2 cut(s) 888, 1555
CfoI GCGC 2 cut(s) 493, 697
ClaI ATCGAT 1 cut(s) 999
Csp6I GTAC 3 cut(s) 217, 562, 1702
CviQI GTAC 3 cut(s) 217, 562, 1702
DdeI CTNAG 7 cut(s) 743, 777, 1053, 1079, 1133, 1148, 1450
DpnI GATC 2 cut(s) 153, 466
DpnII GATC 2 cut(s) 151, 464
DrdI GACNNNNNNGTC 1 cut(s) 1307
DseDI GACNNNNNNGTC 1 cut(s) 1307
EaeI YGGCCR 1 cut(s) 822
Ecl136II GAGCTC 1 cut(s) 1729
Eco130I CCWWGG 3 cut(s) 339, 763, 1015
Eco24I GRGCYC 1 cut(s) 1731
Eco31I GGTCTC 1 cut(s) 762
Eco32I GATATC 1 cut(s) 681
Eco47III AGCGCT 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 1729
Eco57I CTGAAG 3 cut(s) 723, 813, 1752
Eco81I CCTNAGG 1 cut(s) 1079
Eco88I CYCGRG 1 cut(s) 1154
EcoICRI GAGCTC 1 cut(s) 1729
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 1060, 1249
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 3 cut(s) 339, 763, 1015
EcoT38I GRGCYC 1 cut(s) 1731
ErhI CCWWGG 3 cut(s) 339, 763, 1015
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 1343
FauI CCCGC 2 cut(s) 1320, 1585
Fnu4HI GCNGC 6 cut(s) 789, 813, 825, 891, 945, 1590
FokI GGATG 7 cut(s) 58, 240, 345, 443, 890, 1516, 1624
FriOI GRGCYC 1 cut(s) 1731
Fsp4HI GCNGC 6 cut(s) 789, 813, 825, 891, 945, 1590
FspBI CTAG 3 cut(s) 809, 1469, 1530
GlaI GCGC 2 cut(s) 492, 696
GluI GCNGC 6 cut(s) 789, 813, 825, 891, 945, 1590
GsaI CCCAGC 1 cut(s) 1744
HaeII RGCGCY 1 cut(s) 494
HaeIII GGCC 1 cut(s) 824
HhaI GCGC 2 cut(s) 493, 697
Hin6I GCGC 2 cut(s) 491, 695
HinP1I GCGC 2 cut(s) 491, 695
HincII GTYRAC 2 cut(s) 1086, 1543
HindII GTYRAC 2 cut(s) 1086, 1543
HindIII AAGCTT 6 cut(s) 92, 720, 1354, 1367, 1706, 1753
HpaI GTTAAC 1 cut(s) 1086
HphI GGTGA 4 cut(s) 989, 1280, 1401, 1736
Hpy166II GTNNAC 7 cut(s) 991, 1067, 1086, 1270, 1321, 1396, 1543
Hpy188I TCNGA 5 cut(s) 180, 423, 703, 780, 877
Hpy188III TCNNGA 8 cut(s) 155, 224, 318, 476, 587, 676, 831, 1469
Hpy8I GTNNAC 7 cut(s) 991, 1067, 1086, 1270, 1321, 1396, 1543
HpyAV CCTTC 7 cut(s) 698, 783, 797, 882, 1195, 1215, 1553
HpyCH4III ACNGT 7 cut(s) 16, 357, 419, 1318, 1378, 1413, 1521
HpyCH4IV ACGT 2 cut(s) 101, 1392
HpyCH4V TGCA 9 cut(s) 65, 614, 815, 861, 890, 898, 1245, 1277, 1695
HpyF10VI GCNNNNNNNGC 4 cut(s) 288, 821, 953, 1333
HpyF3I CTNAG 7 cut(s) 743, 777, 1053, 1079, 1133, 1148, 1450
HpySE526I ACGT 2 cut(s) 101, 1392
HspAI GCGC 2 cut(s) 491, 695
KspAI GTTAAC 1 cut(s) 1086
Kzo9I GATC 2 cut(s) 151, 464
LmnI GCTCC 2 cut(s) 1124, 1734
Lsp1109I GCAGC 5 cut(s) 799, 800, 902, 956, 1576
LweI GCATC 1 cut(s) 592
MaeI CTAG 3 cut(s) 809, 1469, 1530
MaeII ACGT 2 cut(s) 101, 1392
MaeIII GTNAC 4 cut(s) 351, 1309, 1372, 1654
MalI GATC 2 cut(s) 153, 466
MboI GATC 2 cut(s) 151, 464
MboII GAAGA 6 cut(s) 518, 728, 992, 995, 1577, 1727
MhlI GDGCHC 2 cut(s) 691, 1731
MluCI AATT 5 cut(s) 344, 710, 836, 1092, 1190
MlyI GAGTC 5 cut(s) 51, 293, 584, 1146, 1472
MmeI TCCRAC 5 cut(s) 339, 502, 645, 1138, 1306
MroXI GAANNNNTTC 1 cut(s) 987
MseI TTAA 5 cut(s) 1085, 1262, 1358, 1710, 1757
MslI CAYNNNNRTG 1 cut(s) 856
MspA1I CMGCKG 1 cut(s) 1327
MspR9I CCNGG 2 cut(s) 1062, 1251
Mva1269I GAATGC 1 cut(s) 1277
MvaI CCWGG 2 cut(s) 1062, 1251
MwoI GCNNNNNNNGC 4 cut(s) 288, 821, 953, 1333
NcoI CCATGG 1 cut(s) 339
NdeII GATC 2 cut(s) 151, 464
NlaIV GGNNCC 3 cut(s) 86, 271, 1022
NmeAIII GCCGAG 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 1309, 1372
NspI RCATGY 1 cut(s) 1297
PaeR7I CTCGAG 1 cut(s) 1154
PctI GAATGC 1 cut(s) 1277
PdmI GAANNNNTTC 1 cut(s) 987
PflFI GACNNNGTC 2 cut(s) 1521, 1538
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 6 cut(s) 790, 814, 826, 892, 946, 1591
PleI GAGTC 5 cut(s) 50, 293, 584, 1146, 1471
PpsI GAGTC 5 cut(s) 50, 293, 584, 1146, 1471
Psp124BI GAGCTC 1 cut(s) 1731
Psp6I CCWGG 2 cut(s) 1060, 1249
PspFI CCCAGC 1 cut(s) 1740
PspGI CCWGG 2 cut(s) 1060, 1249
PspN4I GGNNCC 3 cut(s) 86, 271, 1022
PspXI VCTCGAGB 1 cut(s) 1154
PstI CTGCAG 2 cut(s) 67, 616
PsyI GACNNNGTC 2 cut(s) 1521, 1538
RsaI GTAC 3 cut(s) 218, 563, 1703
RsaNI GTAC 3 cut(s) 217, 562, 1702
RseI CAYNNNNRTG 1 cut(s) 856
SacI GAGCTC 1 cut(s) 1731
SaqAI TTAA 5 cut(s) 1085, 1262, 1358, 1710, 1757
SatI GCNGC 6 cut(s) 789, 813, 825, 891, 945, 1590
Sau3AI GATC 2 cut(s) 151, 464
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 5 cut(s) 51, 293, 584, 1146, 1472
ScrFI CCNGG 2 cut(s) 1062, 1251
SduI GDGCHC 2 cut(s) 691, 1731
SfaNI GCATC 1 cut(s) 592
SfcI CTRYAG 3 cut(s) 63, 612, 844
Sfr274I CTCGAG 1 cut(s) 1154
SlaI CTCGAG 1 cut(s) 1154
SmiMI CAYNNNNRTG 1 cut(s) 856
SmlI CTYRAG 2 cut(s) 654, 1154
SmoI CTYRAG 2 cut(s) 654, 1154
Sse9I AATT 5 cut(s) 344, 710, 836, 1092, 1190
SsiI CCGC 4 cut(s) 407, 825, 1327, 1592
SspI AATATT 1 cut(s) 1691
SspMI CTAG 3 cut(s) 809, 1469, 1530
SstI GAGCTC 1 cut(s) 1731
StyD4I CCNGG 2 cut(s) 1060, 1249
StyI CCWWGG 3 cut(s) 339, 763, 1015
TaaI ACNGT 7 cut(s) 16, 357, 419, 1318, 1378, 1413, 1521
TaiI ACGT 2 cut(s) 104, 1395
TaqI TCGA 5 cut(s) 999, 1005, 1155, 1217, 1461
TaqII GACCGA 1 cut(s) 1133
TasI AATT 5 cut(s) 344, 710, 836, 1092, 1190
TatI WGTACW 2 cut(s) 216, 1701
TauI GCSGC 1 cut(s) 827
Tru1I TTAA 5 cut(s) 1085, 1262, 1358, 1710, 1757
Tru9I TTAA 5 cut(s) 1085, 1262, 1358, 1710, 1757
TscAI CASTG 2 cut(s) 1041, 1526
TseFI GTSAC 2 cut(s) 1309, 1372
TseI GCWGC 5 cut(s) 788, 812, 890, 944, 1589
Tsp45I GTSAC 2 cut(s) 1309, 1372
TspDTI ATGAA 5 cut(s) 366, 519, 829, 1417, 1520
TspGWI ACGGA 1 cut(s) 1585
TspRI CASTG 2 cut(s) 1041, 1526
Tth111I GACNNNGTC 2 cut(s) 1521, 1538
Van91I CCANNNNNTGG 1 cut(s) 329
XagI CCTNNNNNAGG 1 cut(s) 79
XapI RAATTY 3 cut(s) 344, 836, 1190
XbaI TCTAGA 1 cut(s) 1468
XceI RCATGY 1 cut(s) 1297
XcmI CCANNNNNNNNNTGG 1 cut(s) 1121
XhoI CTCGAG 1 cut(s) 1154
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 3 cut(s) 809, 1469, 1530
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.