Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007910

Physical Location & Seq

Genomic Coordinates Reverse (-)

14878126 .. 14880589

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACTTGCCCAAGCCGAGTTCCATGCACTTTGACAACAGGAGCAGGCCGGGAAGGCGCGGTATTCTGCAATGGCAAAATTCATTGGATAAGATGCATAAGCCAACTTACTCCTTCTCATATCCGCAATGGGGCTCATCCTGTCAGGTCCCAATTTGTTATCTTGTATCTTTTCCGAGAGAAGGAAAATTATGATGAGGTTGAGGAATCGTCACCTGCTCTTTGGTTGCATATGCCTGGTATATCTCTTTCTGTTGATGTGAAGTCTATTAGCACACTGATAGATGACCACTGTGACAAACCAAAAGAAAAAAGGAGTACGGTGTCTAGATTGGTTTTGGATGTGGAGGATTATCTGGCATACAAAGCTCTTCCTGTCTCTCATGAAGCTGGATGTTCAGTGATAAAAGAAGCAAATATAGGGGCACCACATACATTCTTTGACACTCAGATATTTATGTTCATAACCAATCTTGGTTGGCTAGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

163

Amino Acids

18.29

Weight (kDa)

6.64

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21450
fragaria_vesca	FvH4_2g15030 FvH4_2g15030 FvH4_2g15030
malus_domestica	MD05G1011200.v1.1 MD10G1011000.v1.1
prunus_persica	Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1
pyrus_communis	pycom05g00650
rosa_chinensis	RchiOBHm_Chr6g0277581
rosa_laevigata	RLG00000013290
rosa_multiflora	Rmu_sc0001846.1_g000027
rosa_roxburghii	Rroxscaffold_7G00191190
rosa_rugosa	Rorug06G0109800 Rorug06G0109900 Rorug06G0110000 Rorug06G0110100
rosa_samantha	Rh6AG220300 Rh6BG224200 Rh6CG226500 Rh6DG217100
rosa_wichuraiana	Rw6G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	424
AccII	CGCG	1 cut(s)	59
AciI	CCGC	2 cut(s)	59, 124
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	130, 181
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	368, 389
AluI	AGCT	2 cut(s)	368, 389
Alw26I	GTCTC	1 cut(s)	382
AoxI	GGCC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	136
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	327, 482
BfuAI	ACCTGC	1 cut(s)	223
BglI	GCCNNNNNGGC	1 cut(s)	54
Bme1390I	CCNGG	2 cut(s)	50, 237
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	149, 426
BmrFI	CCNGG	2 cut(s)	50, 237
BmsI	GCATC	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 181
Bse3DI	GCAATG	2 cut(s)	76, 133
BseBI	CCWGG	1 cut(s)	237
BseGI	GGATG	3 cut(s)	136, 346, 398
BseLI	CCNNNNNNNGG	2 cut(s)	130, 181
BseMI	GCAATG	2 cut(s)	76, 133
BseMII	CTCAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	130, 181
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	136, 427
BspACI	CCGC	2 cut(s)	59, 124
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	149, 426
BspMI	ACCTGC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	424
BsrDI	GCAATG	2 cut(s)	76, 133
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	293, 322
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	3 cut(s)	136, 346, 398
BstFNI	CGCG	1 cut(s)	59
BstHHI	GCGC	1 cut(s)	59
BstMAI	GTCTC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 365
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	48, 235
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	136, 346, 398
BtsIMutI	CAGTG	3 cut(s)	275, 289, 405
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	24, 383
CviJI	RGCY	7 cut(s)	15, 48, 102, 134, 368, 389, 481
CviKI_1	RGCY	7 cut(s)	15, 48, 102, 134, 368, 389, 481
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	2 cut(s)	27, 386
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	2 cut(s)	23, 382
FauNDI	CATATG	1 cut(s)	231
FokI	GGATG	3 cut(s)	123, 353, 405
FriOI	GRGCYC	1 cut(s)	136
FspBI	CTAG	2 cut(s)	327, 482
GlaI	GCGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	27, 386
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	176, 450
Hpy188III	TCNNGA	2 cut(s)	327, 383
HpyAV	CCTTC	3 cut(s)	47, 123, 175
HpyCH4III	ACNGT	2 cut(s)	293, 322
HpyCH4V	TGCA	4 cut(s)	27, 69, 96, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 365
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	27, 386
HspAI	GCGC	1 cut(s)	57
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	41
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	2 cut(s)	327, 482
MaeIII	GTNAC	2 cut(s)	210, 293
MboII	GAAGA	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	136, 427
MluCI	AATT	3 cut(s)	78, 152, 187
MnlI	CCTC	3 cut(s)	190, 196, 340
Mph1103I	ATGCAT	1 cut(s)	98
MseI	TTAA	1 cut(s)	486
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	2 cut(s)	50, 237
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	54, 365
NciI	CCSGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	231
NlaIII	CATG	2 cut(s)	27, 386
NlaIV	GGNNCC	2 cut(s)	149, 426
NmeAIII	GCCGAG	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	210, 293
NsiI	ATGCAT	1 cut(s)	98
PagI	TCATGA	1 cut(s)	382
PaqCI	CACCTGC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	2 cut(s)	149, 426
PspPI	GGNCC	1 cut(s)	147
PspPPI	RGGWCCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	486
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	50, 237
SduI	GDGCHC	2 cut(s)	136, 427
SetI	ASST	5 cut(s)	149, 201, 217, 370, 391
SfaNI	GCATC	1 cut(s)	83
SinI	GGWCC	1 cut(s)	147
Sse9I	AATT	3 cut(s)	78, 152, 187
SsiI	CCGC	2 cut(s)	59, 124
SspMI	CTAG	2 cut(s)	327, 482
StyD4I	CCNGG	2 cut(s)	48, 235
TaaI	ACNGT	2 cut(s)	293, 322
TasI	AATT	3 cut(s)	78, 152, 187
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	282, 296, 405
TseFI	GTSAC	2 cut(s)	210, 293
Tsp45I	GTSAC	2 cut(s)	210, 293
TspDTI	ATGAA	3 cut(s)	71, 399, 451
TspRI	CASTG	3 cut(s)	282, 296, 405
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	326
XspI	CTAG	2 cut(s)	327, 482
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.