Rw6G019290

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
38501536 .. 38503282
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019290.1

Sequence Viewer

Length: 1677 bp
ATGTCTTTAGTCAGGCCAGTGGAGCTGTCTGCCACGTCGTACAGAAAATCCAAACTCTACTCTCTGAAGGGAAGCAATGACACTAACACCCAAACATTTGGTGCTGATAAGAATAATACCATGTATACGACTGATTCTTACTCCACCGAGAGTTATGAGTTCCTAGACTCCCCAAGTGAAGAAGTTGTGCATCCATCTAGCTCTAGCATTTCTGGAAGTTCGTTTAATGAGCAAGCTGCCTCATTTTATCCACGCAGAGCTGGATCTGTTTCCTCCTTGACCACTCAAAATCCATCTAGTGCTTCTTTCATGTCCATGAGGCTTCATGATGCTTACCAAACCAACATTGACTCAGATTACTTAGAGAGTCAAAGCCCGGAGGCTGTTAGCTTTGATGACGGTAAGATGAGATTGAAGCTTCAAGAATTGGAGAGAGCACTGCTTGAGGACAACGATGCTGAAGATGATGAGGAGATGATTGGAAATGGTCAAAGCATGGAAATTGACGGTGAATGGACTGAACCAATCCAGAAAGCATTGCTCCATGACTCACCCAAGGAGTCTTCATCATCTGATTCTTATCTAAGCAGCACCAGCACCAACAAAGAAATATCACGAGTATCTCCTCGAACACCCAAGCAGCTGCTGTTTGACTGTGCTGGTGCACTTTCAGAGGGAAATATCGAAGAAGCATCAACCATAATAAATGAGCTTCGGCAGCTGGTCTCAATTCAGGGAGATCCTCCTCAGAGGATTGCAGCATATATGGTGGAAGGCCTTGTAGCTCGCATGGCTTCCTCAGGAAAATATCTCTATAGAGCTTTGAAATGCAAGGAACCTCCATCCTCTTATCGCCTTGCAGCCATGCAAGTACTTTTTGAGGTGTGCCCTTGCTTTAAATTTGGATTCATGGCAGCAAATGGAGCCATTATAGAAGCTACGAAAGATGAAAAGAGTGGGAATCAGTACATAACACTGATACAAGCACTTGCTGAACTGCCTGGTAAGCCACCGCACTTGAGGTTAACGGGGGTTGATGACCCTGAGTCAGTTCAGCGTCCTGTTGGGGGCCTTAATACCATCGGGCAAAGGCTAGAGCAGCTAGCAGAAGGACTTGGTGTTTCATTCGAGTTTCAAGCAGTTGCCTCAAAGACTTCAATCATCAGTCCTCCGATGCTGCACTGTAGGCAAGGGGAAGCACTCGTCATAAATTTTGCTTTTCAGCTTCACCACATGCCCGATGAGAGTGTTTCGACGGTAAACCAGAGAGACCAGCTTCTCCGGCTGGCCAAGAGCTTGAGTCCAAAACTCGTCACAGTTGTGGAACAAGATGTGAACACCAATACTACCCCATTCTTCCCAAGATTTGTTGAAGCCTACAATTATTACTCTGCTGTTTTTGATTCCCTTGAAGCAGCTATACCAAGGGAGAGCCAGGATAGGATGAATGTTGAAAGCAGAGAGGAAAGAATAGAGCGGTATGAGGTTGCAGGGAAGTGGAGAGCCAGGATGGCCATGGCTGGGTTTACTTCAACTCCTATGAGTAAAAGTGTTACTGATTCGATTCGTGACCTTATCAGAATGTATTGTGACAGGTACAAGATAAAGGAAGAAATGGGTGGACTTCATTTTGGATGGGAAGACAAAAGCTTGATTGTTGCTTCAGCATGGAGGTGA

Protein Analysis

558

Amino Acids

62.14

Weight (kDa)

5.02

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 213 - 558 4.6e-109 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1477
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 1013, 1477
AclWI GGATC 2 cut(s) 271, 734
AcoI YGGCCR 2 cut(s) 1287, 1512
AcsI RAATTY 2 cut(s) 899, 1210
AcuI CTGAAG 3 cut(s) 86, 480, 1647
AfaI GTAC 4 cut(s) 41, 873, 968, 1598
AfiI CCNNNNNNNGG 2 cut(s) 1067, 1521
AgsI TTSAA 9 cut(s) 415, 422, 826, 1136, 1158, 1373, 1412, 1454, 1533
AhdI GACNNNNNGTC 1 cut(s) 1045
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 3 cut(s) 1000, 1434, 1505
AleI CACNNNNGTG 1 cut(s) 1319
Alw21I GWGCWC 2 cut(s) 439, 667
Alw26I GTCTC 2 cut(s) 730, 1263
Alw44I GTGCAC 1 cut(s) 663
AlwI GGATC 2 cut(s) 271, 734
AlwNI CAGNNNCTG 1 cut(s) 646
AoxI GGCC 5 cut(s) 14, 775, 1069, 1287, 1512
ApaLI GTGCAC 1 cut(s) 663
ApoI RAATTY 2 cut(s) 899, 1210
AspS9I GGNCC 1 cut(s) 1069
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 3 cut(s) 521, 543, 1220
AsuNHI GCTAGC 1 cut(s) 1102
AxyI CCTNAGG 1 cut(s) 799
BaeGI GKGCMC 2 cut(s) 667, 890
BalI TGGCCA 2 cut(s) 1289, 1514
BarI GAAGNNNNNNTAC 2 cut(s) 1404, 1436
BauI CACGAG 1 cut(s) 615
BbsI GAAGAC 2 cut(s) 555, 1647
Bbv12I GWGCWC 2 cut(s) 439, 667
BccI CCATC 6 cut(s) 202, 301, 850, 1088, 1504, 1629
BciT130I CCWGG 3 cut(s) 1002, 1436, 1507
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 730, 1263
BfaI CTAG 6 cut(s) 164, 198, 204, 297, 1094, 1103
BfmI CTRYAG 2 cut(s) 814, 1183
BglI GCCNNNNNGGC 1 cut(s) 1511
BmcAI AGTACT 1 cut(s) 873
Bme1390I CCNGG 4 cut(s) 377, 1002, 1436, 1507
BmeRI GACNNNNNGTC 1 cut(s) 1045
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 1069
BmiI GGNNCC 3 cut(s) 837, 925, 1070
BmrFI CCNGG 4 cut(s) 377, 1002, 1436, 1507
BmsI GCATC 5 cut(s) 199, 319, 445, 701, 1164
BmtI GCTAGC 1 cut(s) 1106
BpiI GAAGAC 2 cut(s) 555, 1647
BpuEI CTTGAG 3 cut(s) 464, 1039, 1318
BpuMI CCSGG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 2 cut(s) 730, 1263
BsaJI CCNNGG 3 cut(s) 555, 1424, 1515
BsaXI ACNNNNNCTCC 2 cut(s) 1519, 1549
Bsc4I CCNNNNNNNGG 2 cut(s) 1067, 1521
Bse1I ACTGG 1 cut(s) 17
Bse21I CCTNAGG 1 cut(s) 799
Bse3DI GCAATG 2 cut(s) 82, 536
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 3 cut(s) 1002, 1436, 1507
BseDI CCNNGG 3 cut(s) 555, 1424, 1515
BseGI GGATG 5 cut(s) 190, 842, 1449, 1515, 1640
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 1067, 1521
BseMI GCAATG 2 cut(s) 82, 536
BseMII CTCAG 4 cut(s) 366, 761, 813, 1035
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 3 cut(s) 485, 615, 735
BseSI GKGCMC 2 cut(s) 667, 890
BseYI CCCAGC 1 cut(s) 1520
BsgI GTGCAG 1 cut(s) 1163
BshFI GGCC 5 cut(s) 16, 777, 1071, 1289, 1514
BsiHKAI GWGCWC 2 cut(s) 439, 667
BsiSI CCGG 2 cut(s) 377, 1282
BslI CCNNNNNNNGG 2 cut(s) 1067, 1521
BsmAI GTCTC 2 cut(s) 730, 1263
BsnI GGCC 5 cut(s) 16, 777, 1071, 1289, 1514
Bso31I GGTCTC 2 cut(s) 730, 1263
Bsp1286I GDGCHC 3 cut(s) 439, 667, 890
Bsp143I GATC 2 cut(s) 263, 739
Bsp19I CCATGG 1 cut(s) 1515
BspACI CCGC 2 cut(s) 1013, 1477
BspANI GGCC 5 cut(s) 16, 777, 1071, 1289, 1514
BspCNI CTCAG 4 cut(s) 365, 760, 812, 1036
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 837, 925, 1070
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 2 cut(s) 271, 734
BspTNI GGTCTC 2 cut(s) 730, 1263
BsrBI CCGCTC 1 cut(s) 1477
BsrDI GCAATG 2 cut(s) 82, 536
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 3 cut(s) 555, 1424, 1515
BssMI GATC 2 cut(s) 263, 739
BssNAI GTATAC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 615
BssT1I CCWWGG 3 cut(s) 555, 1424, 1515
Bst1107I GTATAC 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 615
Bst2UI CCWGG 3 cut(s) 1002, 1436, 1507
Bst4CI ACNGT 6 cut(s) 401, 509, 656, 1184, 1258, 1318
BstC8I GCNNGC 4 cut(s) 234, 787, 1104, 1287
BstDEI CTNAG 6 cut(s) 352, 361, 584, 747, 799, 1044
BstDSI CCRYGG 1 cut(s) 1515
BstF5I GGATG 5 cut(s) 190, 842, 1449, 1515, 1640
BstKTI GATC 2 cut(s) 266, 742
BstMAI GTCTC 2 cut(s) 730, 1263
BstMBI GATC 2 cut(s) 263, 739
BstNI CCWGG 3 cut(s) 1002, 1436, 1507
BstNSI RCATGY 1 cut(s) 1237
BstSCI CCNGG 4 cut(s) 375, 1000, 1434, 1505
BstSFI CTRYAG 2 cut(s) 814, 1183
BstSLI GKGCMC 2 cut(s) 667, 890
BstV2I GAAGAC 2 cut(s) 555, 1647
BstX2I RGATCY 2 cut(s) 263, 739
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 2 cut(s) 263, 739
BstZ17I GTATAC 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 799
BsuRI GGCC 5 cut(s) 16, 777, 1071, 1289, 1514
BtgI CCRYGG 1 cut(s) 1515
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 5 cut(s) 190, 842, 1449, 1515, 1640
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 4 cut(s) 24, 437, 974, 1180
Cac8I GCNNGC 4 cut(s) 234, 787, 1104, 1287
CaiI CAGNNNCTG 1 cut(s) 646
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 1069
CseI GACGC 1 cut(s) 1046
Csp6I GTAC 4 cut(s) 40, 872, 967, 1597
CspCI CAANNNNNGTGG 2 cut(s) 999, 1034
CviQI GTAC 4 cut(s) 40, 872, 967, 1597
DdeI CTNAG 6 cut(s) 352, 361, 584, 747, 799, 1044
DpnI GATC 2 cut(s) 265, 741
DpnII GATC 2 cut(s) 263, 739
DraI TTTAAA 1 cut(s) 898
DriI GACNNNNNGTC 1 cut(s) 1045
EaeI YGGCCR 2 cut(s) 1287, 1512
Eam1105I GACNNNNNGTC 1 cut(s) 1045
Eco130I CCWWGG 3 cut(s) 555, 1424, 1515
Eco147I AGGCCT 1 cut(s) 777
Eco31I GGTCTC 2 cut(s) 730, 1263
Eco57I CTGAAG 3 cut(s) 86, 480, 1647
Eco81I CCTNAGG 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 1069
EcoRII CCWGG 3 cut(s) 1000, 1434, 1505
EcoT14I CCWWGG 3 cut(s) 555, 1424, 1515
ErhI CCWWGG 3 cut(s) 555, 1424, 1515
FblI GTMKAC 1 cut(s) 125
FokI GGATG 5 cut(s) 177, 829, 1456, 1522, 1647
FspBI CTAG 6 cut(s) 164, 198, 204, 297, 1094, 1103
GsaI CCCAGC 1 cut(s) 1524
HaeIII GGCC 5 cut(s) 16, 777, 1071, 1289, 1514
HapII CCGG 2 cut(s) 377, 1282
HgaI GACGC 1 cut(s) 1046
HincII GTYRAC 1 cut(s) 1026
HindII GTYRAC 1 cut(s) 1026
HindIII AAGCTT 2 cut(s) 416, 1648
HpaI GTTAAC 1 cut(s) 1026
HpaII CCGG 2 cut(s) 377, 1282
HphI GGTGA 3 cut(s) 521, 543, 1220
Hpy166II GTNNAC 7 cut(s) 126, 665, 1026, 1261, 1336, 1527, 1622
Hpy188I TCNGA 7 cut(s) 66, 355, 574, 673, 750, 1173, 1580
Hpy188III TCNNGA 7 cut(s) 213, 326, 422, 529, 615, 801, 1568
Hpy8I GTNNAC 7 cut(s) 126, 665, 1026, 1261, 1336, 1527, 1622
Hpy99I CGWCG 2 cut(s) 40, 1258
HpyAV CCTTC 3 cut(s) 61, 767, 1103
HpyCH4III ACNGT 6 cut(s) 401, 509, 656, 1184, 1258, 1318
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 8 cut(s) 190, 665, 758, 831, 860, 868, 1180, 1490
HpyF3I CTNAG 6 cut(s) 352, 361, 584, 747, 799, 1044
HpySE526I ACGT 1 cut(s) 35
KspAI GTTAAC 1 cut(s) 1026
Kzo9I GATC 2 cut(s) 263, 739
LmnI GCTCC 3 cut(s) 22, 546, 923
LweI GCATC 5 cut(s) 199, 319, 445, 701, 1164
MaeI CTAG 6 cut(s) 164, 198, 204, 297, 1094, 1103
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 1312, 1552, 1568, 1589
MalI GATC 2 cut(s) 265, 741
MbiI CCGCTC 1 cut(s) 1477
MboI GATC 2 cut(s) 263, 739
MboII GAAGA 7 cut(s) 191, 473, 555, 698, 1348, 1622, 1652
MflI RGATCY 2 cut(s) 263, 739
MhlI GDGCHC 3 cut(s) 439, 667, 890
MlsI TGGCCA 2 cut(s) 1289, 1514
MluCI AATT 6 cut(s) 425, 501, 729, 899, 1210, 1381
MluNI TGGCCA 2 cut(s) 1289, 1514
MlyI GAGTC 7 cut(s) 161, 344, 376, 542, 569, 1055, 1309
Mox20I TGGCCA 2 cut(s) 1289, 1514
MscI TGGCCA 2 cut(s) 1289, 1514
MseI TTAA 4 cut(s) 225, 897, 1025, 1074
MslI CAYNNNNRTG 3 cut(s) 314, 1319, 1672
Msp20I TGGCCA 2 cut(s) 1289, 1514
MspA1I CMGCKG 2 cut(s) 643, 721
MspI CCGG 2 cut(s) 377, 1282
MspR9I CCNGG 4 cut(s) 377, 1002, 1436, 1507
MvaI CCWGG 3 cut(s) 1002, 1436, 1507
NciI CCSGG 1 cut(s) 377
NcoI CCATGG 1 cut(s) 1515
NdeII GATC 2 cut(s) 263, 739
NheI GCTAGC 1 cut(s) 1102
NlaIV GGNNCC 3 cut(s) 837, 925, 1070
NmuCI GTSAC 3 cut(s) 1312, 1568, 1589
NspI RCATGY 1 cut(s) 1237
OliI CACNNNNGTG 1 cut(s) 1319
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 777
PfeI GAWTC 7 cut(s) 134, 575, 906, 961, 1403, 1559, 1564
PleI GAGTC 7 cut(s) 161, 344, 375, 542, 568, 1054, 1308
PpsI GAGTC 7 cut(s) 161, 344, 375, 542, 568, 1054, 1308
Psp6I CCWGG 3 cut(s) 1000, 1434, 1505
PspFI CCCAGC 1 cut(s) 1520
PspGI CCWGG 3 cut(s) 1000, 1434, 1505
PspN4I GGNNCC 3 cut(s) 837, 925, 1070
PspPI GGNCC 1 cut(s) 1069
PstNI CAGNNNCTG 1 cut(s) 646
PsuI RGATCY 2 cut(s) 263, 739
PvuII CAGCTG 2 cut(s) 643, 721
RsaI GTAC 4 cut(s) 41, 873, 968, 1598
RsaNI GTAC 4 cut(s) 40, 872, 967, 1597
RseI CAYNNNNRTG 3 cut(s) 314, 1319, 1672
SaqAI TTAA 4 cut(s) 225, 897, 1025, 1074
Sau3AI GATC 2 cut(s) 263, 739
Sau96I GGNCC 1 cut(s) 1069
ScaI AGTACT 1 cut(s) 873
SchI GAGTC 7 cut(s) 161, 344, 376, 542, 569, 1055, 1309
ScrFI CCNGG 4 cut(s) 377, 1002, 1436, 1507
SduI GDGCHC 3 cut(s) 439, 667, 890
SfaNI GCATC 5 cut(s) 199, 319, 445, 701, 1164
SfcI CTRYAG 2 cut(s) 814, 1183
SmiMI CAYNNNNRTG 3 cut(s) 314, 1319, 1672
SmlI CTYRAG 3 cut(s) 443, 1018, 1297
SmoI CTYRAG 3 cut(s) 443, 1018, 1297
Sse9I AATT 6 cut(s) 425, 501, 729, 899, 1210, 1381
SseBI AGGCCT 1 cut(s) 777
SsiI CCGC 2 cut(s) 1013, 1477
SspMI CTAG 6 cut(s) 164, 198, 204, 297, 1094, 1103
StuI AGGCCT 1 cut(s) 777
StyD4I CCNGG 4 cut(s) 375, 1000, 1434, 1505
StyI CCWWGG 3 cut(s) 555, 1424, 1515
TaaI ACNGT 6 cut(s) 401, 509, 656, 1184, 1258, 1318
TaiI ACGT 1 cut(s) 38
TaqI TCGA 5 cut(s) 628, 684, 1128, 1253, 1562
TasI AATT 6 cut(s) 425, 501, 729, 899, 1210, 1381
TatI WGTACW 2 cut(s) 871, 966
TfiI GAWTC 7 cut(s) 134, 575, 906, 961, 1403, 1559, 1564
Tru1I TTAA 4 cut(s) 225, 897, 1025, 1074
Tru9I TTAA 4 cut(s) 225, 897, 1025, 1074
TscAI CASTG 4 cut(s) 24, 444, 981, 1187
TseFI GTSAC 3 cut(s) 1312, 1568, 1589
Tsp45I GTSAC 3 cut(s) 1312, 1568, 1589
TspDTI ATGAA 8 cut(s) 298, 314, 555, 898, 963, 1113, 1460, 1616
TspRI CASTG 4 cut(s) 24, 444, 981, 1187
VneI GTGCAC 1 cut(s) 663
XapI RAATTY 2 cut(s) 899, 1210
XceI RCATGY 1 cut(s) 1237
XcmI CCANNNNNNNNNTGG 1 cut(s) 1513
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 6 cut(s) 164, 198, 204, 297, 1094, 1103
ZrmI AGTACT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.