Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007910

Physical Location & Seq

Genomic Coordinates Reverse (-)

14916024 .. 14916515

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0110100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCTAGAGTTGATCAAAATGTGTTTGTCAAGGTAGGTTTGGTGTTAGTAAGTGTAGCACTATTCATGTCATCATTTGCAGCAGCTCAAGAATATGAGGTTATTTATCAAATTTCTGATGATGCTGCGGCGAGCCCTATTGGCATCGAGGTTGACTTAGTCATTGATGATGCCTTCCCTCCAATTTCTTCAGAAAACGGTCAATATGTGTTCCCTCCTAACCCATCACCGGAATCTTATAAGAAGTTGGATGAATGTGTAAATAAGATTACAGGATATTATGCTGGAGAGATCTTGCCCCGAATTTTTAAAAGCGAACCTCTCACTACGGATAGTTGCAAAACCATTCTGCATTTGGGATATGATTGTCACATTCGGTCAGTGAAAACTCTGCTCTCACGTCCGGAACTAAAAGAAAAAGCTTCTGAGATGCTGCCTAAAAGTGTGCAGATTTGGGAAACATGTGCCTTTGTTGCCCCTTCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

163

Amino Acids

18.04

Weight (kDa)

4.8

Isoelectric Point (pI)

60.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21450
fragaria_vesca	FvH4_2g15030 FvH4_2g15030 FvH4_2g15030
malus_domestica	MD05G1011200.v1.1 MD10G1011000.v1.1
prunus_persica	Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1
pyrus_communis	pycom05g00650
rosa_chinensis	RchiOBHm_Chr6g0277581
rosa_laevigata	RLG00000013290
rosa_multiflora	Rmu_sc0001846.1_g000027
rosa_roxburghii	Rroxscaffold_7G00191190
rosa_rugosa	Rorug06G0109800 Rorug06G0109900 Rorug06G0110000 Rorug06G0110100
rosa_samantha	Rh6AG220300 Rh6BG224200 Rh6CG226500 Rh6DG217100
rosa_wichuraiana	Rw6G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	111, 303
AcuI	CTGAAG	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	461
AjiI	CACGTC	1 cut(s)	401
AluBI	AGCT	2 cut(s)	86, 422
AluI	AGCT	2 cut(s)	86, 422
Aor13HI	TCCGGA	1 cut(s)	403
ApeKI	GCWGC	4 cut(s)	80, 83, 125, 433
ApoI	RAATTY	2 cut(s)	111, 303
AsuHPI	GGTGA	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	137
BbvI	GCAGC	4 cut(s)	92, 95, 112, 420
BccI	CCATC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	141
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	5 cut(s)	81, 84, 126, 129, 434
BlsI	GCNGC	5 cut(s)	82, 85, 127, 130, 435
BmgBI	CACGTC	1 cut(s)	401
BmsI	GCATC	4 cut(s)	112, 153, 160, 420
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	229, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseAI	TCCGGA	1 cut(s)	403
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	417
BseXI	GCAGC	4 cut(s)	92, 95, 112, 420
BsgI	GTGCAG	1 cut(s)	467
BsiSI	CCGG	2 cut(s)	230, 404
BslI	CCNNNNNNNGG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	13, 291
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	418
BspEI	TCCGGA	1 cut(s)	403
BssMI	GATC	2 cut(s)	13, 291
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	157, 426
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	16, 294
BstMBI	GATC	2 cut(s)	13, 291
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 473
BstNSI	RCATGY	1 cut(s)	465
BstV1I	GCAGC	4 cut(s)	92, 95, 112, 420
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	133
CviAII	CATG	2 cut(s)	67, 462
CviJI	RGCY	4 cut(s)	5, 86, 135, 422
CviKI_1	RGCY	4 cut(s)	5, 86, 135, 422
DdeI	CTNAG	2 cut(s)	157, 426
DpnI	GATC	2 cut(s)	15, 293
DpnII	GATC	2 cut(s)	13, 291
DraI	TTTAAA	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	2 cut(s)	70, 465
FaiI	YATR	7 cut(s)	68, 96, 207, 240, 282, 363, 463
FatI	CATG	2 cut(s)	66, 461
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	5 cut(s)	81, 84, 126, 129, 434
FokI	GGATG	1 cut(s)	263
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	5 cut(s)	81, 84, 126, 129, 434
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	5 cut(s)	81, 84, 126, 129, 434
GsuI	CTGGAG	1 cut(s)	306
HapII	CCGG	2 cut(s)	230, 404
Hin1II	CATG	2 cut(s)	70, 465
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	2 cut(s)	230, 404
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	118, 193, 427
Hpy188III	TCNNGA	2 cut(s)	89, 404
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	184, 489
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	4 cut(s)	80, 339, 352, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 473
HpyF3I	CTNAG	2 cut(s)	157, 426
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	2 cut(s)	70, 465
Kpn2I	TCCGGA	1 cut(s)	403
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	13, 291
LpnPI	CCDG	4 cut(s)	243, 258, 270, 417
Lsp1109I	GCAGC	4 cut(s)	92, 95, 112, 420
LweI	GCATC	4 cut(s)	112, 153, 160, 420
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	15, 293
MboI	GATC	2 cut(s)	13, 291
MboII	GAAGA	1 cut(s)	180
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	3 cut(s)	111, 183, 303
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	91, 142, 189, 225, 330
MroI	TCCGGA	1 cut(s)	403
MseI	TTAA	1 cut(s)	309
MspI	CCGG	2 cut(s)	230, 404
MwoI	GCNNNNNNNGC	2 cut(s)	141, 473
NdeII	GATC	2 cut(s)	13, 291
NlaIII	CATG	2 cut(s)	70, 465
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	465
PciI	ACATGT	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	233
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	82, 85, 127, 130, 435
PscI	ACATGT	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	5 cut(s)	81, 84, 126, 129, 434
Sau3AI	GATC	2 cut(s)	13, 291
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	8 cut(s)	36, 40, 88, 102, 153, 322, 403, 424
SfaNI	GCATC	4 cut(s)	112, 153, 160, 420
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	111, 183, 303
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	147
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	111, 183, 303
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	4 cut(s)	80, 83, 125, 433
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	55, 267
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	387
Tth111I	GACNNNGTC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	111, 303
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.